PI0026564 (gene) Melon (PI 482460) v1

Overview


Name	PI0026564
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr04: 27971985 .. 27972377 (-)
RNA-Seq Expression	PI0026564
Synteny	PI0026564

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGGCAACTTACGATACACTGGTTATGAATATTACTGATAATGTGCTAAGACAAGTAATTGAAGAAACCACTGCTTTCGCTACTTGGTTGAAATTGAAGGCAATGTATAAAAAGAAAAACCTACCAAACAAAATGTTCATGAGGGAGAAATTATTTTCATTTAAAATGAATAAGAACAAGAATCTTGATGAAAATTTAGATGAGTTCAAGAAACTTACCAATGCTCTTAATCAAACTGGGGAGAAGTTGGGTGAGGAAAGTAAAGTTGTCATTCTTATTAATTCAATTCATAACACCTACAAAGAAGTGAAGACAACTCTGAAGTATGGTAAAGAGACAATCACTGTGAATTCAGTCATTACAGCTCTAAAAAGCAAGGAACTTTAA

mRNA sequence

ATGGAAGAGGCAACTTACGATACACTGGTTATGAATATTACTGATAATGTGCTAAGACAAGTAATTGAAGAAACCACTGCTTTCGCTACTTGGTTGAAATTGAAGGCAATGTATAAAAAGAAAAACCTACCAAACAAAATGTTCATGAGGGAGAAATTATTTTCATTTAAAATGAATAAGAACAAGAATCTTGATGAAAATTTAGATGAGTTCAAGAAACTTACCAATGCTCTTAATCAAACTGGGGAGAAGTTGGGTGAGGAAAGTAAAGTTGTCATTCTTATTAATTCAATTCATAACACCTACAAAGAAGTGAAGACAACTCTGAAGTATGGTAAAGAGACAATCACTGTGAATTCAGTCATTACAGCTCTAAAAAGCAAGGAACTTTAA

Coding sequence (CDS)

ATGGAAGAGGCAACTTACGATACACTGGTTATGAATATTACTGATAATGTGCTAAGACAAGTAATTGAAGAAACCACTGCTTTCGCTACTTGGTTGAAATTGAAGGCAATGTATAAAAAGAAAAACCTACCAAACAAAATGTTCATGAGGGAGAAATTATTTTCATTTAAAATGAATAAGAACAAGAATCTTGATGAAAATTTAGATGAGTTCAAGAAACTTACCAATGCTCTTAATCAAACTGGGGAGAAGTTGGGTGAGGAAAGTAAAGTTGTCATTCTTATTAATTCAATTCATAACACCTACAAAGAAGTGAAGACAACTCTGAAGTATGGTAAAGAGACAATCACTGTGAATTCAGTCATTACAGCTCTAAAAAGCAAGGAACTTTAA

Protein sequence

MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVNSVITALKSKEL

Homology

[Close]

BLAST of PI0026564 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.9e-14
Identity = 40/129 (31.01%), Postives = 79/129 (61.24%), Query Frame = 0


Query: 1   MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNK 60
           ++E     + ++++D+V+  +I+E TA   W +L+++Y  K L NK++++++L++  M++
Sbjct: 55  LDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSE 114

Query: 61  NKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVNS 120
             N   +L+ F  L   L   G K+ EE K ++L+NS+ ++Y  + TT+ +GK TI +  
Sbjct: 115 GTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKD 174

Query: 121 VITALKSKE 130
           V +AL   E
Sbjct: 175 VTSALLLNE 183

[Close]

BLAST of PI0026564 vs. ExPASy TrEMBL
Match: A0A5A7U6R2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00930 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.1e-50
Identity = 107/130 (82.31%), Postives = 120/130 (92.31%), Query Frame = 0


Query: 1   MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNK 60
           +EE  Y TL+MNITDNVLRQVIEETTAFATW KLK++Y+KK+LPNKMF++EKLFSFK N+
Sbjct: 55  LEEVAYSTLIMNITDNVLRQVIEETTAFATWEKLKSLYEKKDLPNKMFIKEKLFSFKKNQ 114

Query: 61  NKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVNS 120
           NKNLDENLDEFKKLTNALNQTGEKLG E++  ILINSIH+TYKEVKT LKYG+ETITVNS
Sbjct: 115 NKNLDENLDEFKKLTNALNQTGEKLGAENEAAILINSIHDTYKEVKTGLKYGRETITVNS 174

Query: 121 VITALKSKEL 131
           VIT LKSKEL
Sbjct: 175 VITTLKSKEL 184

[Close]

BLAST of PI0026564 vs. ExPASy TrEMBL
Match: A0A5D3DVM0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00690 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.7e-48
Identity = 106/130 (81.54%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 1   MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNK 60
           +EE  Y TL+MNITDNVLRQVIEETT FATW  LK++Y+KK+L NKMF+REKLFSFKMN+
Sbjct: 55  LEEVAYSTLIMNITDNVLRQVIEETTGFATWEILKSLYEKKDLSNKMFIREKLFSFKMNQ 114

Query: 61  NKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVNS 120
           NKNLDENLDEFKKLTNALNQT EKLG ES+  ILIN IH+TYKEVKT+LKYG+ETITVNS
Sbjct: 115 NKNLDENLDEFKKLTNALNQTREKLGAESEAAILINLIHDTYKEVKTSLKYGRETITVNS 174

Query: 121 VITALKSKEL 131
           VITALKSKEL
Sbjct: 175 VITALKSKEL 184

[Close]

BLAST of PI0026564 vs. ExPASy TrEMBL
Match: A0A5D3CPM8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00430 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 9.4e-39
Identity = 91/111 (81.98%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 20  QVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALN 79
           +VIEET AFATW KLK++Y+KK+LPNKMF+REKLFSFKMN+NKNLDENLDEFKK TNALN
Sbjct: 597 KVIEETIAFATWEKLKSLYEKKDLPNKMFIREKLFSFKMNQNKNLDENLDEFKKFTNALN 656

Query: 80  QTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVNSVITALKSKEL 131
           QT EKLG   +  ILINSIH+TYKEVKT LKYG+ETITVNSVITALKSKEL
Sbjct: 657 QTREKLG-AGEAAILINSIHDTYKEVKTALKYGRETITVNSVITALKSKEL 706

[Close]

BLAST of PI0026564 vs. ExPASy TrEMBL
Match: A0A5A7TMB4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00520 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 9.4e-39
Identity = 91/111 (81.98%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 20  QVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALN 79
           +VIEET AFATW KLK++Y+KK+LPNKMF+REKLFSFKMN+NKNLDENLDEFKK TNALN
Sbjct: 593 KVIEETIAFATWEKLKSLYEKKDLPNKMFIREKLFSFKMNQNKNLDENLDEFKKFTNALN 652

Query: 80  QTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVNSVITALKSKEL 131
           QT EKLG   +  ILINSIH+TYKEVKT LKYG+ETITVNSVITALKSKEL
Sbjct: 653 QTREKLG-AGEAAILINSIHDTYKEVKTALKYGRETITVNSVITALKSKEL 702

[Close]

BLAST of PI0026564 vs. ExPASy TrEMBL
Match: A0A5A7TAZ3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold768G00070 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 88/130 (67.69%), Postives = 108/130 (83.08%), Query Frame = 0


Query: 1   MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNK 60
           MEE TY+ L++NITDNVLRQVI E T +    KL A+Y KK+LP+K++MREKLFSFKMN+
Sbjct: 55  MEETTYEILILNITDNVLRQVINENTTYEICEKLTALYDKKDLPSKLYMREKLFSFKMNQ 114

Query: 61  NKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVNS 120
           +K L+ENLDEFKKLTN  NQ GEKL  ES+  I INS+H+TYKEVK+TLKYG+E++ V+ 
Sbjct: 115 SKTLNENLDEFKKLTNEFNQLGEKLRAESEAAIFINSLHDTYKEVKSTLKYGRESVLVDV 174

Query: 121 VITALKSKEL 131
           VITALKSKEL
Sbjct: 175 VITALKSKEL 184

[Close]

BLAST of PI0026564 vs. NCBI nr
Match: KAA0051442.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22211.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 207.6 bits (527), Expect = 6.4e-50
Identity = 107/130 (82.31%), Postives = 120/130 (92.31%), Query Frame = 0


Query: 1   MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNK 60
           +EE  Y TL+MNITDNVLRQVIEETTAFATW KLK++Y+KK+LPNKMF++EKLFSFK N+
Sbjct: 55  LEEVAYSTLIMNITDNVLRQVIEETTAFATWEKLKSLYEKKDLPNKMFIKEKLFSFKKNQ 114

Query: 61  NKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVNS 120
           NKNLDENLDEFKKLTNALNQTGEKLG E++  ILINSIH+TYKEVKT LKYG+ETITVNS
Sbjct: 115 NKNLDENLDEFKKLTNALNQTGEKLGAENEAAILINSIHDTYKEVKTGLKYGRETITVNS 174

Query: 121 VITALKSKEL 131
           VIT LKSKEL
Sbjct: 175 VITTLKSKEL 184

[Close]

BLAST of PI0026564 vs. NCBI nr
Match: TYK27723.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 3.5e-48
Identity = 106/130 (81.54%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 1   MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNK 60
           +EE  Y TL+MNITDNVLRQVIEETT FATW  LK++Y+KK+L NKMF+REKLFSFKMN+
Sbjct: 55  LEEVAYSTLIMNITDNVLRQVIEETTGFATWEILKSLYEKKDLSNKMFIREKLFSFKMNQ 114

Query: 61  NKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVNS 120
           NKNLDENLDEFKKLTNALNQT EKLG ES+  ILIN IH+TYKEVKT+LKYG+ETITVNS
Sbjct: 115 NKNLDENLDEFKKLTNALNQTREKLGAESEAAILINLIHDTYKEVKTSLKYGRETITVNS 174

Query: 121 VITALKSKEL 131
           VITALKSKEL
Sbjct: 175 VITALKSKEL 184

[Close]

BLAST of PI0026564 vs. NCBI nr
Match: TYK12279.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 1.9e-38
Identity = 91/111 (81.98%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 20  QVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALN 79
           +VIEET AFATW KLK++Y+KK+LPNKMF+REKLFSFKMN+NKNLDENLDEFKK TNALN
Sbjct: 597 KVIEETIAFATWEKLKSLYEKKDLPNKMFIREKLFSFKMNQNKNLDENLDEFKKFTNALN 656

Query: 80  QTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVNSVITALKSKEL 131
           QT EKLG   +  ILINSIH+TYKEVKT LKYG+ETITVNSVITALKSKEL
Sbjct: 657 QTREKLG-AGEAAILINSIHDTYKEVKTALKYGRETITVNSVITALKSKEL 706

[Close]

BLAST of PI0026564 vs. NCBI nr
Match: KAA0043186.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 1.9e-38
Identity = 91/111 (81.98%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 20  QVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNKNKNLDENLDEFKKLTNALN 79
           +VIEET AFATW KLK++Y+KK+LPNKMF+REKLFSFKMN+NKNLDENLDEFKK TNALN
Sbjct: 593 KVIEETIAFATWEKLKSLYEKKDLPNKMFIREKLFSFKMNQNKNLDENLDEFKKFTNALN 652

Query: 80  QTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVNSVITALKSKEL 131
           QT EKLG   +  ILINSIH+TYKEVKT LKYG+ETITVNSVITALKSKEL
Sbjct: 653 QTREKLG-AGEAAILINSIHDTYKEVKTALKYGRETITVNSVITALKSKEL 702

[Close]

BLAST of PI0026564 vs. NCBI nr
Match: KAA0040138.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 2.5e-38
Identity = 88/130 (67.69%), Postives = 108/130 (83.08%), Query Frame = 0


Query: 1   MEEATYDTLVMNITDNVLRQVIEETTAFATWLKLKAMYKKKNLPNKMFMREKLFSFKMNK 60
           MEE TY+ L++NITDNVLRQVI E T +    KL A+Y KK+LP+K++MREKLFSFKMN+
Sbjct: 55  MEETTYEILILNITDNVLRQVINENTTYEICEKLTALYDKKDLPSKLYMREKLFSFKMNQ 114

Query: 61  NKNLDENLDEFKKLTNALNQTGEKLGEESKVVILINSIHNTYKEVKTTLKYGKETITVNS 120
           +K L+ENLDEFKKLTN  NQ GEKL  ES+  I INS+H+TYKEVK+TLKYG+E++ V+ 
Sbjct: 115 SKTLNENLDEFKKLTNEFNQLGEKLRAESEAAIFINSLHDTYKEVKSTLKYGRESVLVDV 174

Query: 121 VITALKSKEL 131
           VITALKSKEL
Sbjct: 175 VITALKSKEL 184

The following BLAST results are available for this feature:

BLAST of PI0026564 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.9e-14	31.01	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of PI0026564 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U6R2	3.1e-50	82.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DVM0	1.7e-48	81.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CPM8	9.4e-39	81.98	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7TMB4	9.4e-39	81.98	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7TAZ3	1.2e-38	67.69	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of PI0026564 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051442.1	6.4e-50	82.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK27723.1	3.5e-48	81.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK12279.1	1.9e-38	81.98	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
KAA0043186.1	1.9e-38	81.98	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
KAA0040138.1	2.5e-38	67.69	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of PI0026564 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 61..81
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 5..129 e-value: 6.7E-27 score: 93.9
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 7..88
None	No IPR available	PANTHER	PTHR34676:SF12	ZINC FINGER, CCHC-TYPE, RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN PROTEIN-RELATED	coord: 7..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026564.1	PI0026564.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding