PI0026542 (gene) Melon (PI 482460) v1

Overview


Name	PI0026542
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	60S ribosomal protein L28-1-like
Location	chr05: 333640 .. 335784 (+)
RNA-Seq Expression	PI0026542
Synteny	PI0026542

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCCTTTTAAATTGTTAACTTAGGGTTTTTTTTGGTAGTAAAGCTTCCACTATATATAAGATCAATTAGGGCTCAAGAAAGCGGCAGACGGAACCGGCGTCCTCTCTTCTGCTTCTGCTTCTGCTTCTGCATCTCTCTCCACGCGTTGCACCGCAGGTCTGTTCGTTCTTGGCCTTTCAGATCTCCATTTTTCTGATTTTTCATTGTTTATATCTCATATCAACTCCCATACTTACTGTTGTTGTTGATCTTCGAAATAGATTTGTTTCTTATTCATTGGATAGTTTTTTTTTTTTTATTTATTTTAAATAAAGTAGATTCTTTTGTAGATGGCGAACGTTCCGGGGCAGTTGGTATGGGAAATCGTTAAGAAAAACAGCTCTTTCCTCGTTAAAGAGTTTGGCAGAGGCAATGCCAGTGTTCAATTCAGCAAAGAGCCTAACAACCTCTACAACCTCAACTCCTACAAGCATTCCGGTAAGATTCCAATACTTTATCACTTTGACCAGTTTAACGTTGGACACGATTGACATTTTTGTTATGTACTTTCTTATTAAGGAGGAAGTATTTTATCTTGCTTTTGTTTTAATGTGTTGGGTTTGTTACTAGTTTGGTTATGGAACTTTATTTGGGTGTTCTTTCAGGGTTGGCAAATCGTAAGACGGTGACCATTCTGCCTGGAGGCAAAGATTTGTCAGTATTGCTCGCGACATCAAAGACGAAGAAGCAGAACAAACCAGCGAATTCGCTCCACAAATCCGTCATGAGGAAGGAGTTTCCTCGCATGGCCAAGGCTGTGACTAATCAGGTAACTAGCGTCTCCAGATTTTCTCGTTGATGCCCATCGAGATGAAATTTGTGTTTCTGAAGTCCGATCATTCTTACCTGTTGTCAGTACTGCCTGTAGTTATCATTGGCCGTTTATGGTTTGAGTCATCGTGGAATTGAACCTTTTTTTGTGATGATGAGCTGCTAACATGTAAGAAGGGTCACTTTTGTAGTGGCATCTTCAATGAAATCCTTTTGTTACGCTTGGCTTCTGAGCATTAGTTCTCATCTTAGCTGTAAGCAGCTTCAATCTTTTAATGGTTTTGCTTGATAGATGTATCTCTGTTTATATTCCTTAGAGCTTTCTTGATGAAGTTTTCCTCATCATCCCATAGTCGCATATTGACCTTTTGTGAATGTTATACTACACCGGAATGTTATTGGGCCAAGGGGAGGACCAGCTTCAATTTTTACTCTTACTGTGATGATGAGCTGCTAACATGTAAGAAGAGGTCACTTTTGTAGTGGCATCTTCAATGAAATCTATTTGTTACGCTTGGCTTCTGAGCATTAATTCTCCTCTTGGCCAAAAACAACTTCGATCTTTTATTTGTTTTGCTTGATTGGAACTCTGATTATATTTCTTAACACTTGCTTAATGTAGTTTGTCATAACTTCCCGTACAATAATATCAAACTTAAACTGTTACTGCGATGATGAGCTGCTAACATGTAAGAAGGTGTCGCTTTTGTAGTGCCATCTTCAGTGAAATCTTTTTGTTACGCTTGGCTTCTGAGCATTAAATTATCAAATGAATGTGGTTAGGAGGAATGTTTATTCTAGTATACTTGTGAAGATTTGTATATTGTTTTCTTCTGATTGTTAATTTAATTATTTTATTGCTAAATTTGGGGTGCACTTGATTATTTTGCAGGTTGCCGACAACTACTACCGCCCAGACTTGAAGAATGCTGCCCTTGCTAAGCTAAGCGCAGTGCACAGGAGCCTCAAGGTTGCCAAATCAGGCGTGAAGAAGAGGAACAGACAGGCTGTTAGGACCTGCGGTAGGAAGTGAAACAATGGTTCATAAGGAAATTTTCTTCTATTTGAGTTTTTTTTAACCCTGTTTCCTATTTTCTAAAGAGACATCTAGAAGAGGGCTTTTCTTTAATTTCAAAATTTCTGTGCCCTACTTGAAAATTAGGATTTTTGACGATTTTGGTTTATATTTGAACACCTGCCCTTTGGATTTTTGTTCATTTCTTGTAGTCTATAAAGGATTGGTTAAATTATGAAATATTGATACCAAGATATACTCTTTGGCTCACCATACTTTCCAATCTTTATATCAGTATCCGTTCACCCTTGGTTTAAAA

mRNA sequence

GTGCCTTTTAAATTGTTAACTTAGGGTTTTTTTTGGTAGTAAAGCTTCCACTATATATAAGATCAATTAGGGCTCAAGAAAGCGGCAGACGGAACCGGCGTCCTCTCTTCTGCTTCTGCTTCTGCTTCTGCATCTCTCTCCACGCGTTGCACCGCAGATGGCGAACGTTCCGGGGCAGTTGGTATGGGAAATCGTTAAGAAAAACAGCTCTTTCCTCGTTAAAGAGTTTGGCAGAGGCAATGCCAGTGTTCAATTCAGCAAAGAGCCTAACAACCTCTACAACCTCAACTCCTACAAGCATTCCGGGTTGGCAAATCGTAAGACGGTGACCATTCTGCCTGGAGGCAAAGATTTGTCAGTATTGCTCGCGACATCAAAGACGAAGAAGCAGAACAAACCAGCGAATTCGCTCCACAAATCCGTCATGAGGAAGGAGTTTCCTCGCATGGCCAAGGCTGTGACTAATCAGGTTGCCGACAACTACTACCGCCCAGACTTGAAGAATGCTGCCCTTGCTAAGCTAAGCGCAGTGCACAGGAGCCTCAAGGTTGCCAAATCAGGCGTGAAGAAGAGGAACAGACAGGCTGTTAGGACCTGCGGTAGGAAGTGAAACAATGGTTCATAAGGAAATTTTCTTCTATTTGAGTTTTTTTTAACCCTGTTTCCTATTTTCTAAAGAGACATCTAGAAGAGGGCTTTTCTTTAATTTCAAAATTTCTGTGCCCTACTTGAAAATTAGGATTTTTGACGATTTTGGTTTATATTTGAACACCTGCCCTTTGGATTTTTGTTCATTTCTTGTAGTCTATAAAGGATTGGTTAAATTATGAAATATTGATACCAAGATATACTCTTTGGCTCACCATACTTTCCAATCTTTATATCAGTATCCGTTCACCCTTGGTTTAAAA

Coding sequence (CDS)

ATGGCGAACGTTCCGGGGCAGTTGGTATGGGAAATCGTTAAGAAAAACAGCTCTTTCCTCGTTAAAGAGTTTGGCAGAGGCAATGCCAGTGTTCAATTCAGCAAAGAGCCTAACAACCTCTACAACCTCAACTCCTACAAGCATTCCGGGTTGGCAAATCGTAAGACGGTGACCATTCTGCCTGGAGGCAAAGATTTGTCAGTATTGCTCGCGACATCAAAGACGAAGAAGCAGAACAAACCAGCGAATTCGCTCCACAAATCCGTCATGAGGAAGGAGTTTCCTCGCATGGCCAAGGCTGTGACTAATCAGGTTGCCGACAACTACTACCGCCCAGACTTGAAGAATGCTGCCCTTGCTAAGCTAAGCGCAGTGCACAGGAGCCTCAAGGTTGCCAAATCAGGCGTGAAGAAGAGGAACAGACAGGCTGTTAGGACCTGCGGTAGGAAGTGA

Protein sequence

MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTILPGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALAKLSAVHRSLKVAKSGVKKRNRQAVRTCGRK

Homology

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BLAST of PI0026542 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-52
Identity = 103/143 (72.03%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTI 
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
              KD +V+LAT+KTKKQNKP  S++KS+++KEFPRM+KAV NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of PI0026542 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.2e-52
Identity = 102/143 (71.33%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MA VPGQL+WEIVK+N+ FLVK+FGRGNA VQFSKE NNL N+NSYKHSGLAN+KTVTI 
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
             GKD  V+L T+KTK+QNKP  S++KS+++KEF RM+K V NQV DNYYRPDLK AALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of PI0026542 vs. ExPASy Swiss-Prot
Match: Q3T0L7 (60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 0


Query: 8   LVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTILPGGKDLS 67
           L W +V+  SSFL+K          +S EPNNL   NS++++GL +RKTV + P      
Sbjct: 5   LQWMVVRNCSSFLIK-----RNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  VLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALAKLSAVHR 127
           V++   +   Q KPA S  ++ + K       ++ + +  N YRPDL+ AA+ + SA+ R
Sbjct: 65  VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 122

Query: 128 SLK 131
           S K
Sbjct: 125 SQK 122

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BLAST of PI0026542 vs. ExPASy Swiss-Prot
Match: P46779 (60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 0


Query: 8   LVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTILPGGKDLS 67
           L W +V+  SSFL+K          +S EPNNL   NS++++GL +RKTV + P      
Sbjct: 5   LQWMVVRNCSSFLIK-----RNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  VLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALAKLSAVHR 127
           V++   +   Q KPA S  ++ + K       ++ + +  N YRPDL+ AA+ + SA+ R
Sbjct: 65  VVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 122

Query: 128 SLK 131
           S K
Sbjct: 125 SQK 122

[Close]

BLAST of PI0026542 vs. ExPASy Swiss-Prot
Match: Q962T2 (60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 48/131 (36.64%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 8   LVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTILPGGKDLS 67
           L W I++ N++FLVK   + N    FSKEPNN+ NLNSY+++GL  +K V ++       
Sbjct: 5   LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKG 64

Query: 68  VLLATSKTKKQNKPANSLHKSVMRKEFPRMAK----AVTNQVADNYYRPDLKNAALAKLS 127
             +   K K  NKPA    K+ +R++F   A+     V   +  N+YR DL  A L + S
Sbjct: 65  FTVVYKKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRAS 124

Query: 128 AVHRSLKVAKS 135
           A+ RS +  K+
Sbjct: 125 AILRSQRPIKA 128

[Close]

BLAST of PI0026542 vs. ExPASy TrEMBL
Match: A0A1S3CAX2 (60S ribosomal protein L28-1-like OS=Cucumis melo OX=3656 GN=LOC103498417 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 8.2e-71
Identity = 145/150 (96.67%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLY+LNSYKHSGLAN KTVTI 
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYSLNSYKHSGLANLKTVTIQ 60

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
           PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA
Sbjct: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLKVAKSGVKK NRQAVRT GRK
Sbjct: 121 KLSAVHRSLKVAKSGVKKGNRQAVRTRGRK 150

[Close]

BLAST of PI0026542 vs. ExPASy TrEMBL
Match: A0A5D3CHM3 (60S ribosomal protein L28-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00850 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.1e-70
Identity = 144/150 (96.00%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLY+LNSYKHSGLAN KTVTI 
Sbjct: 398 MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYSLNSYKHSGLANLKTVTIQ 457

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
           PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA
Sbjct: 458 PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 517

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLKVAKSGVKK NRQAV T GRK
Sbjct: 518 KLSAVHRSLKVAKSGVKKGNRQAVTTRGRK 547

[Close]

BLAST of PI0026542 vs. ExPASy TrEMBL
Match: A0A0A0LHT1 (Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000570 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.1e-70
Identity = 145/150 (96.67%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTI 
Sbjct: 47  MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 106

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
           PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAV NQVADNYYRPDLKNAALA
Sbjct: 107 PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVINQVADNYYRPDLKNAALA 166

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLKVAKSGVKKRNRQ+V T GRK
Sbjct: 167 KLSAVHRSLKVAKSGVKKRNRQSV-TRGRK 195

[Close]

BLAST of PI0026542 vs. ExPASy TrEMBL
Match: A0A5A7V008 (60S ribosomal protein L28-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00620 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.0e-70
Identity = 144/150 (96.00%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLY+LNSYKHSGLAN KTVTI 
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYSLNSYKHSGLANLKTVTIQ 60

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
           PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYR DLKNAALA
Sbjct: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRSDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLKVAKSGVKK NRQAVRT GRK
Sbjct: 121 KLSAVHRSLKVAKSGVKKGNRQAVRTRGRK 150

[Close]

BLAST of PI0026542 vs. ExPASy TrEMBL
Match: A0A6J1DMI9 (60S ribosomal protein L28-1-like OS=Momordica charantia OX=3673 GN=LOC111021927 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.2e-67
Identity = 136/150 (90.67%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MANVPGQLVWEIVKKN+SFLVKEFGRGNA VQFSKEPNNLYNLNSYKHSGLANRKTVTI 
Sbjct: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
           PGGKDLSVLLAT+K KKQNKPA+ LH+SVMRKEFPRMAKAV NQVADNYYRPDLK AALA
Sbjct: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLS VHRSLKVAKSGVKKRNRQA++T GRK
Sbjct: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150

[Close]

BLAST of PI0026542 vs. NCBI nr
Match: XP_008459233.1 (PREDICTED: 60S ribosomal protein L28-1-like [Cucumis melo])

HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70
Identity = 145/150 (96.67%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLY+LNSYKHSGLAN KTVTI 
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYSLNSYKHSGLANLKTVTIQ 60

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
           PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA
Sbjct: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLKVAKSGVKK NRQAVRT GRK
Sbjct: 121 KLSAVHRSLKVAKSGVKKGNRQAVRTRGRK 150

[Close]

BLAST of PI0026542 vs. NCBI nr
Match: TYK10772.1 (60S ribosomal protein L28-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 273.9 bits (699), Expect = 8.4e-70
Identity = 144/150 (96.00%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLY+LNSYKHSGLAN KTVTI 
Sbjct: 398 MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYSLNSYKHSGLANLKTVTIQ 457

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
           PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA
Sbjct: 458 PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 517

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLKVAKSGVKK NRQAV T GRK
Sbjct: 518 KLSAVHRSLKVAKSGVKKGNRQAVTTRGRK 547

[Close]

BLAST of PI0026542 vs. NCBI nr
Match: XP_004141045.1 (60S ribosomal protein L28-1 [Cucumis sativus] >KGN60570.2 hypothetical protein Csa_019262 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 8.4e-70
Identity = 145/150 (96.67%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTI 
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
           PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAV NQVADNYYRPDLKNAALA
Sbjct: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVINQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLKVAKSGVKKRNRQ+V T GRK
Sbjct: 121 KLSAVHRSLKVAKSGVKKRNRQSV-TRGRK 149

[Close]

BLAST of PI0026542 vs. NCBI nr
Match: XP_038889445.1 (60S ribosomal protein L28-1-like [Benincasa hispida])

HSP 1 Score: 273.9 bits (699), Expect = 8.4e-70
Identity = 141/150 (94.00%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MANVPGQLVWEIVKKNSSFL KEFGRGNAS+QFSKEPNNLYNLNSYKHSGLAN+KTVTI 
Sbjct: 1   MANVPGQLVWEIVKKNSSFLFKEFGRGNASIQFSKEPNNLYNLNSYKHSGLANQKTVTIQ 60

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
           PGGKDLSVLLAT+KTKKQNKPA+ LHKS+MRKEFPRMAKAVTNQVADNYYRPDLKNAALA
Sbjct: 61  PGGKDLSVLLATTKTKKQNKPASLLHKSIMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLKVAKSGVKKRNRQAVRT GRK
Sbjct: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTRGRK 150

[Close]

BLAST of PI0026542 vs. NCBI nr
Match: KAA0061502.1 (60S ribosomal protein L28-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 144/150 (96.00%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLY+LNSYKHSGLAN KTVTI 
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYSLNSYKHSGLANLKTVTIQ 60

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
           PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYR DLKNAALA
Sbjct: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRSDLKNAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTCGRK 151
           KLSAVHRSLKVAKSGVKK NRQAVRT GRK
Sbjct: 121 KLSAVHRSLKVAKSGVKKGNRQAVRTRGRK 150

[Close]

BLAST of PI0026542 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family )

HSP 1 Score: 207.2 bits (526), Expect = 9.0e-54
Identity = 103/143 (72.03%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTI 
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
              KD +V+LAT+KTKKQNKP  S++KS+++KEFPRM+KAV NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of PI0026542 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family )

HSP 1 Score: 207.2 bits (526), Expect = 9.0e-54
Identity = 103/143 (72.03%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTI 
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
              KD +V+LAT+KTKKQNKP  S++KS+++KEFPRM+KAV NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of PI0026542 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family )

HSP 1 Score: 207.2 bits (526), Expect = 9.0e-54
Identity = 103/143 (72.03%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MA VPGQL+WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTI 
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
              KD +V+LAT+KTKKQNKP  S++KS+++KEFPRM+KAV NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of PI0026542 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family )

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-53
Identity = 102/143 (71.33%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MA VPGQL+WEIVK+N+ FLVK+FGRGNA VQFSKE NNL N+NSYKHSGLAN+KTVTI 
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
             GKD  V+L T+KTK+QNKP  S++KS+++KEF RM+K V NQV DNYYRPDLK AALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of PI0026542 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family )

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-53
Identity = 102/143 (71.33%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIL 60
           MA VPGQL+WEIVK+N+ FLVK+FGRGNA VQFSKE NNL N+NSYKHSGLAN+KTVTI 
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120
             GKD  V+L T+KTK+QNKP  S++KS+++KEF RM+K V NQV DNYYRPDLK AALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVAKSGVKKRNRQA 144
           +LSA+ + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

The following BLAST results are available for this feature:

BLAST of PI0026542 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82204	1.3e-52	72.03	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
Q9M0E2	2.2e-52	71.33	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
Q3T0L7	1.7e-12	34.96	60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3	[more]
P46779	1.7e-12	34.96	60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3	[more]
Q962T2	1.7e-12	36.64	60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1	[more]

BLAST of PI0026542 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CAX2	8.2e-71	96.67	60S ribosomal protein L28-1-like OS=Cucumis melo OX=3656 GN=LOC103498417 PE=3 SV...	[more]
A0A5D3CHM3	4.1e-70	96.00	60S ribosomal protein L28-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0LHT1	4.1e-70	96.67	Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000...	[more]
A0A5A7V008	7.0e-70	96.00	60S ribosomal protein L28-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A6J1DMI9	4.2e-67	90.67	60S ribosomal protein L28-1-like OS=Momordica charantia OX=3673 GN=LOC111021927 ...	[more]

BLAST of PI0026542 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459233.1	1.7e-70	96.67	PREDICTED: 60S ribosomal protein L28-1-like [Cucumis melo]	[more]
TYK10772.1	8.4e-70	96.00	60S ribosomal protein L28-1-like [Cucumis melo var. makuwa]	[more]
XP_004141045.1	8.4e-70	96.67	60S ribosomal protein L28-1 [Cucumis sativus] >KGN60570.2 hypothetical protein C...	[more]
XP_038889445.1	8.4e-70	94.00	60S ribosomal protein L28-1-like [Benincasa hispida]	[more]
KAA0061502.1	1.4e-69	96.00	60S ribosomal protein L28-1-like [Cucumis melo var. makuwa]	[more]

BLAST of PI0026542 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19730.1	9.0e-54	72.03	Ribosomal L28e protein family	[more]
AT2G19730.2	9.0e-54	72.03	Ribosomal L28e protein family	[more]
AT2G19730.3	9.0e-54	72.03	Ribosomal L28e protein family	[more]
AT4G29410.1	1.5e-53	71.33	Ribosomal L28e protein family	[more]
AT4G29410.2	1.5e-53	71.33	Ribosomal L28e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.390.110		coord: 6..133 e-value: 2.3E-43 score: 149.6
None	No IPR available	PANTHER	PTHR10544:SF19	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 1..150
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 8..128 e-value: 4.8E-33 score: 114.3
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026542.1	PI0026542.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005840	ribosome
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0003735	structural constituent of ribosome