PI0026504 (gene) Melon (PI 482460) v1

Overview


Name	PI0026504
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	protein PAM68, chloroplastic
Location	chr06: 30107026 .. 30109257 (+)
RNA-Seq Expression	PI0026504
Synteny	PI0026504

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTTTCCTAAAAACGAAAAAAAAAAAAGGTTTTTTTTCCCGTAGACACGTGGGGCAGCCACATTGGTCTGCCAAATGCTTTAGGAACCCAAAAATCTTCCGCCAATTCTACGCTAAATTTTGATGAAAACCTTATCCTCTTTCACTGCTCTCATCCATGGCGTCCGTCCCTGCTTCGCACAGTGAATACAAAATGTAAGAGACGCGTCGACTGTATTTCAGTTTCATAGACAAACCTTAATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGGTACTTTTCTCATTTCGCCTCCCGATTGCAACATTTCTTTGAGTTCTGTAACAACCTTTTCTTCTATAACTACTTCAAATTATACCTAAACGGTGAAGGATTCTTTAATCATAACTGTTTATCAATGGATTTTCATAAGTTCATCAATCAACAATCGGTTTCTTAAAGATTAGGAGTAGGGATTTAGGATTTACTTGATCAGGGATACTTGTAAAACCTAGAACGATCCATTGATTCATTTCAATGACTACTACTTGAATTATAATGAAACGGAAGAAGACGAAGGATTCTTTAGTCTAAACTATTCATCAATCGAATTTCAGTTTTGATTAGTAGTTAGGATTTAGGATTGATATCAGTGAAACCTAGCGCGATTCATCGATCTAGTTCGATGATAACTACTTGAATGTTGAATTATACTGAAATGGAAGGAAGACGAAGGATTTTTTTAAATATCTGAACTATTGATTTTCCATTTCGATCAGTTTACGAACACTAGGAGTTAGGATAGTTTTGAAGAATAATTGATTGTAAGAAGAAAACAAGTGGTCTACTTTTACCGGAGAGTAGTTTATAGTTCGAGAATTATGAGGTTGGGCGAAGAAAACAAGTGTGGTTTCTTTGAATATGTTGTTAGTCTATGACTTTGGTTTCAAGTCGTCTAATCTGAGTTAAATTTATTCTTGGACATCAAGGTTTTTTTTCCATAATTTTTAAGAATGAGTGATAATTCCTAAAAAAAAAAAAAAAAATTTACTACACCTAAATGCAAAATTCTTTGCGTTTAGAGGTTTTTTTCCATATATTTTTCTTCTTTGCCCCTTGCACTTAAGCCCTAGAAAACTATTATGCTTTGCCTTAACATTGGTTTCAGTGTTTGAGAGGGGGAAAACATGCATGAATGTTACGATTTTTTAGTTATTATTTTTTTTATGTTAGGCTTTGTTTTTCTTCAATTTTAGAGTTTTTCACGTAAATTTTTATGTAGTTTTGTTTTGTGTAGTTTCTCAATTATATTATGTAGTTGTAGTGAGGTTTTTTAGTAATCAGAATTGATATTTGTTAAATTTAGAACGACTGGTTGATTACTAGACAAATTTCTATATTTTCAGCAGAAAAATTGTAAATTCTCAATCCATATAAAAAGCAACGAAAGAAATTGTTTCCCAAATTTGAGACCAACCATTAACCAAAACCAAACTCGGACGAACCACCTCACGAGTTTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTCCAAGGAAGAAGAAGACGAAGAAAACAAAAGGAGAAGAAAGCGAGGGCGATGACAATGATGAAGACGAAGACGACGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACAGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTACCAGTCATAGTCTCATTCTTCTTCTTTGGTTCAGCTCTTTTAGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGATCTAATAAGAAATAGATGCATTGGCCTTTTCTTCTCTTTCTTTCTTTCTATTGTTCATTTTGGATAAATATTATGATTTTTTTTCCACAGAAGTGATATGAGAAGCTAAAACAAGCATAGTTCAACTAATATATTGTATTTATTGGCAACCAAGAAGTTTGTAGTTTGTTAAGTTGAGCTTAACTCAATAACAATTAGCAATAACCTTCTATTCTCGAGGTTGGAGGTTCAAATTTTTACCTCATAAATTGTTGTGTACTAAAA

mRNA sequence

GTTTTTTCCTAAAAACGAAAAAAAAAAAAGGTTTTTTTTCCCGTAGACACGTGGGGCAGCCACATTGGTCTGCCAAATGCTTTAGGAACCCAAAAATCTTCCGCCAATTCTACGCTAAATTTTGATGAAAACCTTATCCTCTTTCACTGCTCTCATCCATGGCGTCCGTCCCTGCTTCGCACAGTGAATACAAAATGTAAGAGACGCGTCGACTGTATTTCAGTTTCATAGACAAACCTTAATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGCAGAAAAATTGTAAATTCTCAATCCATATAAAAAGCAACGAAAGAAATTGTTTCCCAAATTTGAGACCAACCATTAACCAAAACCAAACTCGGACGAACCACCTCACGAGTTTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTCCAAGGAAGAAGAAGACGAAGAAAACAAAAGGAGAAGAAAGCGAGGGCGATGACAATGATGAAGACGAAGACGACGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACAGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTACCAGTCATAGTCTCATTCTTCTTCTTTGGTTCAGCTCTTTTAGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGATCTAATAAGAAATAGATGCATTGGCCTTTTCTTCTCTTTCTTTCTTTCTATTGTTCATTTTGGATAAATATTATGATTTTTTTTCCACAGAAGTGATATGAGAAGCTAAAACAAGCATAGTTCAACTAATATATTGTATTTATTGGCAACCAAGAAGTTTGTAGTTTGTTAAGTTGAGCTTAACTCAATAACAATTAGCAATAACCTTCTATTCTCGAGGTTGGAGGTTCAAATTTTTACCTCATAAATTGTTGTGTACTAAAA

Coding sequence (CDS)

ATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGCAGAAAAATTGTAAATTCTCAATCCATATAAAAAGCAACGAAAGAAATTGTTTCCCAAATTTGAGACCAACCATTAACCAAAACCAAACTCGGACGAACCACCTCACGAGTTTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTCCAAGGAAGAAGAAGACGAAGAAAACAAAAGGAGAAGAAAGCGAGGGCGATGACAATGATGAAGACGAAGACGACGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACAGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTACCAGTCATAGTCTCATTCTTCTTCTTTGGTTCAGCTCTTTTAGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGATCTAATAAGAAATAG

Protein sequence

MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSIHIKSNERNCFPNLRPTINQNQTRTNHLTSLNATLRRPKGFGPAPRKKKTKKTKGEESEGDDNDEDEDDEEEEGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK

Homology

[Close]

BLAST of PI0026504 vs. ExPASy Swiss-Prot
Match: O49668 (Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.7e-60
Identity = 118/165 (71.52%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 51  NQTRTNHLTSLNATLRRPKGFGPAPRK-KKTKKTK-GEESEGDDNDEDEDDEEEEG---- 110
           N+   + +  L+AT+  PKGFGP P+K KK+KK K G +S+ DD+DEDEDD++EE     
Sbjct: 50  NRLEISRIAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERER 109

Query: 111 GVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSA 170
           GVIPE+VTNRM+SRMGFTVG+PLFIGLLFFPFFYYLKVGLK+DVP+WVP IVSF FFG+A
Sbjct: 110 GVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTA 169

Query: 171 LLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 210
           L GVSYGIVSSSWDP+REGSLLGWNEA+KNWPVFWQS W  S+K+
Sbjct: 170 LAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

[Close]

BLAST of PI0026504 vs. ExPASy Swiss-Prot
Match: Q9LTD9 (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-11
Identity = 58/184 (31.52%), Postives = 87/184 (47.28%), Query Frame = 0


Query: 17  LPLLRIKQKNCKFSIHIKSNERNCFPNLRPTINQNQTRTNHLTSLNATLRRPKGFGPAPR 76
           LPL  + +   K   H   N +  +PN +P            + L+A    PKGF     
Sbjct: 11  LPLSSLSRTTVKTKSH---NPKTLYPNNKPRWE---------SKLHA---GPKGF----- 70

Query: 77  KKKTKKTKGEESEGDDNDEDEDDEEEEGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPF 136
               + ++  E  G  + + EDD       IP+ V  RMM R+  +VG PL +G+     
Sbjct: 71  ----QSSRTSEKPGRPDPDPEDDPP-----IPQEVFERMMGRIVVSVGTPLGLGVAILKV 130

Query: 137 FYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWP 196
              LK     DVP WVP + +   FGS+ LG++YG +S++ DP +  SL G  EA++NW 
Sbjct: 131 LEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWV 165

Query: 197 VFWQ 201
             W+
Sbjct: 191 EMWK 165

[Close]

BLAST of PI0026504 vs. ExPASy TrEMBL
Match: A0A1S3BKQ0 (protein PAM68, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490730 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.5e-104
Identity = 200/217 (92.17%), Postives = 202/217 (93.09%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSIHIKSNERNCFPNLRPTINQNQTRTNHLTS 60
           MAAIAGSLNLPLAPSNLPLLRIKQKNC+FSIHIKS ERNCFPN RPTINQNQTRTNH TS
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTS 60

Query: 61  LNATLRRPKGFGPAPRKKKTKKTKGEESEGDDNDED--------EDDEEEEGGVIPEVVT 120
           LNATLRRPKGFGPAPRKKK KKTKGE  E DDNDED        ED+EEEEGGVIPEVVT
Sbjct: 61  LNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVVT 120

Query: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180
           NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI
Sbjct: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180

Query: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 210
           VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK
Sbjct: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217

[Close]

BLAST of PI0026504 vs. ExPASy TrEMBL
Match: A0A1S3BKY8 (protein PAM68, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490730 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.3e-102
Identity = 199/217 (91.71%), Postives = 201/217 (92.63%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSIHIKSNERNCFPNLRPTINQNQTRTNHLTS 60
           MAAIAGSLNLPLAPSNLPLLRIK KNC+FSIHIKS ERNCFPN RPTINQNQTRTNH TS
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIK-KNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTS 60

Query: 61  LNATLRRPKGFGPAPRKKKTKKTKGEESEGDDNDED--------EDDEEEEGGVIPEVVT 120
           LNATLRRPKGFGPAPRKKK KKTKGE  E DDNDED        ED+EEEEGGVIPEVVT
Sbjct: 61  LNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVVT 120

Query: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180
           NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI
Sbjct: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180

Query: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 210
           VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK
Sbjct: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 216

[Close]

BLAST of PI0026504 vs. ExPASy TrEMBL
Match: A0A0A0L507 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006590 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.2e-98
Identity = 193/214 (90.19%), Postives = 201/214 (93.93%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSIHIKSNERNCFPNLRPTI--NQNQTRTNHL 60
           MAAIAGSLNLPLAPSNLPLLRIK KNCKFS+HIKSNERNCFPNLRPTI  NQNQT TN  
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIK-KNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRP 60

Query: 61  TSLNATLRRPKGFGPAPRKKKTKKTKGEESEGDDNDEDE---DDEEEEGGVIPEVVTNRM 120
           TSLNATLRRPKGFGPA RKKKTKKT+ E SE DDN+E+E   ++EEEEGGVIPEVVTNRM
Sbjct: 61  TSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRM 120

Query: 121 MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 180
           MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS
Sbjct: 121 MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 180

Query: 181 SWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 210
           SWDP+REGSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 181 SWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 213

[Close]

BLAST of PI0026504 vs. ExPASy TrEMBL
Match: A0A6J1CUC6 (protein PAM68, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014847 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 3.1e-84
Identity = 166/209 (79.43%), Postives = 184/209 (88.04%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSIHIKSNERNCFPNLRPTINQNQTRTNHLTS 60
           MAAIAGSLNLPLAPSNLP LRIK +NCKFSIH KS+ER  FP LRP+I QNQTR N    
Sbjct: 1   MAAIAGSLNLPLAPSNLPSLRIK-RNCKFSIHSKSHERIRFPLLRPSIYQNQTRINQPAI 60

Query: 61  LNATLRRPKGFGPAPRKKKTKKTKGEESEGDDNDEDEDDEEEEGGVIPEVVTNRMMSRMG 120
           L ATLR PKGFGPAP+K+K K  + +E + D+++++++DEE EGGVIPEVVTNRMMSRMG
Sbjct: 61  LRATLRSPKGFGPAPKKRKKKSQESDEEDEDEDEDEDEDEEAEGGVIPEVVTNRMMSRMG 120

Query: 121 FTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPM 180
           F+VGIPL IGLLFFPFFYYLKVGLKIDVP+WVP IVSFFFFGSALLGVSYGIVSSSWDPM
Sbjct: 121 FSVGIPLLIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFFFFGSALLGVSYGIVSSSWDPM 180

Query: 181 REGSLLGWNEAQKNWPVFWQSIWGGSNKK 210
           REGSLLGWNEAQKNWPVFWQSIW  S+KK
Sbjct: 181 REGSLLGWNEAQKNWPVFWQSIWAKSDKK 208

[Close]

BLAST of PI0026504 vs. ExPASy TrEMBL
Match: A0A6J1GB37 (protein PAM68, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452558 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 7.2e-81
Identity = 167/213 (78.40%), Postives = 181/213 (84.98%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSIHIKSNERNCFPNLRPTINQNQTRTNHLTS 60
           MAAI GSLNLPLAPS LP L I  +N   SI  KS +RN F  LRP++ QNQTRTNH   
Sbjct: 1   MAAITGSLNLPLAPSKLPSLHI-TRNYNLSIQSKSQKRNYFSLLRPSLYQNQTRTNHTLI 60

Query: 61  LNATLRRPKGFGPAPRKKKTKKTKG---EESEGDDNDEDEDDEEEEGGVIPEVVTNRMMS 120
           +NATLR PKGFGPAPRKKK KKTKG    E E +D +++E++EEE+ GVIPEVVTNRM+S
Sbjct: 61  VNATLRSPKGFGPAPRKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRGVIPEVVTNRMIS 120

Query: 121 RMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180
           RMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW
Sbjct: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180

Query: 181 DPMREGSLLGWNEAQKNWPVFWQSIW-GGSNKK 210
           DPMREGSLLGWNEAQKNWPVFWQSIW GGSNKK
Sbjct: 181 DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 212

[Close]

BLAST of PI0026504 vs. NCBI nr
Match: XP_008448604.1 (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 387.5 bits (994), Expect = 7.3e-104
Identity = 200/217 (92.17%), Postives = 202/217 (93.09%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSIHIKSNERNCFPNLRPTINQNQTRTNHLTS 60
           MAAIAGSLNLPLAPSNLPLLRIKQKNC+FSIHIKS ERNCFPN RPTINQNQTRTNH TS
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTS 60

Query: 61  LNATLRRPKGFGPAPRKKKTKKTKGEESEGDDNDED--------EDDEEEEGGVIPEVVT 120
           LNATLRRPKGFGPAPRKKK KKTKGE  E DDNDED        ED+EEEEGGVIPEVVT
Sbjct: 61  LNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVVT 120

Query: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180
           NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI
Sbjct: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180

Query: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 210
           VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK
Sbjct: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217

[Close]

BLAST of PI0026504 vs. NCBI nr
Match: XP_008448605.1 (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 380.9 bits (977), Expect = 6.8e-102
Identity = 199/217 (91.71%), Postives = 201/217 (92.63%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSIHIKSNERNCFPNLRPTINQNQTRTNHLTS 60
           MAAIAGSLNLPLAPSNLPLLRIK KNC+FSIHIKS ERNCFPN RPTINQNQTRTNH TS
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIK-KNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTS 60

Query: 61  LNATLRRPKGFGPAPRKKKTKKTKGEESEGDDNDED--------EDDEEEEGGVIPEVVT 120
           LNATLRRPKGFGPAPRKKK KKTKGE  E DDNDED        ED+EEEEGGVIPEVVT
Sbjct: 61  LNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVVT 120

Query: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180
           NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI
Sbjct: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180

Query: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 210
           VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK
Sbjct: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 216

[Close]

BLAST of PI0026504 vs. NCBI nr
Match: XP_011650314.1 (protein PAM68, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 374.8 bits (961), Expect = 4.9e-100
Identity = 194/214 (90.65%), Postives = 202/214 (94.39%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSIHIKSNERNCFPNLRPTI--NQNQTRTNHL 60
           MAAIAGSLNLPLAPSNLPLLRIKQKNCKFS+HIKSNERNCFPNLRPTI  NQNQT TN  
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRP 60

Query: 61  TSLNATLRRPKGFGPAPRKKKTKKTKGEESEGDDNDEDE---DDEEEEGGVIPEVVTNRM 120
           TSLNATLRRPKGFGPA RKKKTKKT+ E SE DDN+E+E   ++EEEEGGVIPEVVTNRM
Sbjct: 61  TSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRM 120

Query: 121 MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 180
           MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS
Sbjct: 121 MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 180

Query: 181 SWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 210
           SWDP+REGSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 181 SWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214

[Close]

BLAST of PI0026504 vs. NCBI nr
Match: XP_004146119.1 (protein PAM68, chloroplastic isoform X2 [Cucumis sativus] >KGN55697.1 hypothetical protein Csa_010628 [Cucumis sativus])

HSP 1 Score: 368.2 bits (944), Expect = 4.6e-98
Identity = 193/214 (90.19%), Postives = 201/214 (93.93%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSIHIKSNERNCFPNLRPTI--NQNQTRTNHL 60
           MAAIAGSLNLPLAPSNLPLLRIK KNCKFS+HIKSNERNCFPNLRPTI  NQNQT TN  
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIK-KNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRP 60

Query: 61  TSLNATLRRPKGFGPAPRKKKTKKTKGEESEGDDNDEDE---DDEEEEGGVIPEVVTNRM 120
           TSLNATLRRPKGFGPA RKKKTKKT+ E SE DDN+E+E   ++EEEEGGVIPEVVTNRM
Sbjct: 61  TSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRM 120

Query: 121 MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 180
           MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS
Sbjct: 121 MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 180

Query: 181 SWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 210
           SWDP+REGSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 181 SWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 213

[Close]

BLAST of PI0026504 vs. NCBI nr
Match: XP_038877162.1 (protein PAM68, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 337.8 bits (865), Expect = 6.6e-89
Identity = 175/209 (83.73%), Postives = 187/209 (89.47%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSIHIKSNERNCFPNLRPTINQNQTRTNHLTS 60
           MAAI+GSLNLPLAPSNL   RIK +NCK SIH+KS ERNCFP L P+INQ +  TN  T+
Sbjct: 1   MAAISGSLNLPLAPSNLSSPRIK-RNCKISIHLKSYERNCFPKLIPSINQRRIHTNQSTT 60

Query: 61  LNATLRRPKGFGPAPRKKKTKKTKGEESEGDDNDEDEDDEEEEGGVIPEVVTNRMMSRMG 120
           LNATLRR KGFGPAPR+KK KKTK E SE +  DEDED+EEEEGGVIPEVVTNRM+SRMG
Sbjct: 61  LNATLRRQKGFGPAPRRKKMKKTKREGSEDEHGDEDEDEEEEEGGVIPEVVTNRMISRMG 120

Query: 121 FTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPM 180
           F+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPM
Sbjct: 121 FSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPM 180

Query: 181 REGSLLGWNEAQKNWPVFWQSIWGGSNKK 210
           REGSLLGWNEAQKNWPVFWQS+WGGSNKK
Sbjct: 181 REGSLLGWNEAQKNWPVFWQSLWGGSNKK 208

[Close]

BLAST of PI0026504 vs. TAIR 10
Match: AT4G19100.1 (Protein of unknown function (DUF3464) )

HSP 1 Score: 231.9 bits (590), Expect = 4.8e-61
Identity = 118/165 (71.52%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 51  NQTRTNHLTSLNATLRRPKGFGPAPRK-KKTKKTK-GEESEGDDNDEDEDDEEEEG---- 110
           N+   + +  L+AT+  PKGFGP P+K KK+KK K G +S+ DD+DEDEDD++EE     
Sbjct: 50  NRLEISRIAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERER 109

Query: 111 GVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSA 170
           GVIPE+VTNRM+SRMGFTVG+PLFIGLLFFPFFYYLKVGLK+DVP+WVP IVSF FFG+A
Sbjct: 110 GVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTA 169

Query: 171 LLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 210
           L GVSYGIVSSSWDP+REGSLLGWNEA+KNWPVFWQS W  S+K+
Sbjct: 170 LAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

[Close]

BLAST of PI0026504 vs. TAIR 10
Match: AT5G52780.1 (Protein of unknown function (DUF3464) )

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-12
Identity = 58/184 (31.52%), Postives = 87/184 (47.28%), Query Frame = 0


Query: 17  LPLLRIKQKNCKFSIHIKSNERNCFPNLRPTINQNQTRTNHLTSLNATLRRPKGFGPAPR 76
           LPL  + +   K   H   N +  +PN +P            + L+A    PKGF     
Sbjct: 11  LPLSSLSRTTVKTKSH---NPKTLYPNNKPRWE---------SKLHA---GPKGF----- 70

Query: 77  KKKTKKTKGEESEGDDNDEDEDDEEEEGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPF 136
               + ++  E  G  + + EDD       IP+ V  RMM R+  +VG PL +G+     
Sbjct: 71  ----QSSRTSEKPGRPDPDPEDDPP-----IPQEVFERMMGRIVVSVGTPLGLGVAILKV 130

Query: 137 FYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWP 196
              LK     DVP WVP + +   FGS+ LG++YG +S++ DP +  SL G  EA++NW 
Sbjct: 131 LEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWV 165

Query: 197 VFWQ 201
             W+
Sbjct: 191 EMWK 165

The following BLAST results are available for this feature:

BLAST of PI0026504 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49668	6.7e-60	71.52	Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1	[more]
Q9LTD9	3.4e-11	31.52	Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 ...	[more]

BLAST of PI0026504 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BKQ0	3.5e-104	92.17	protein PAM68, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490730 ...	[more]
A0A1S3BKY8	3.3e-102	91.71	protein PAM68, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490730 ...	[more]
A0A0A0L507	2.2e-98	90.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006590 PE=4 SV=1	[more]
A0A6J1CUC6	3.1e-84	79.43	protein PAM68, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014847 PE=4...	[more]
A0A6J1GB37	7.2e-81	78.40	protein PAM68, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452558 PE=4 ...	[more]

BLAST of PI0026504 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448604.1	7.3e-104	92.17	PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo]	[more]
XP_008448605.1	6.8e-102	91.71	PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo]	[more]
XP_011650314.1	4.9e-100	90.65	protein PAM68, chloroplastic isoform X1 [Cucumis sativus]	[more]
XP_004146119.1	4.6e-98	90.19	protein PAM68, chloroplastic isoform X2 [Cucumis sativus] >KGN55697.1 hypothetic...	[more]
XP_038877162.1	6.6e-89	83.73	protein PAM68, chloroplastic isoform X1 [Benincasa hispida]	[more]

BLAST of PI0026504 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19100.1	4.8e-61	71.52	Protein of unknown function (DUF3464)	[more]
AT5G52780.1	2.4e-12	31.52	Protein of unknown function (DUF3464)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021855	PAM68-like	PFAM	PF11947	DUF3464	coord: 67..201 e-value: 1.7E-51 score: 173.9
IPR021855	PAM68-like	PANTHER	PTHR34575	PROTEIN PAM68, CHLOROPLASTIC	coord: 26..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..63
None	No IPR available	PANTHER	PTHR34575:SF1	PROTEIN PAM68, CHLOROPLASTIC	coord: 26..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026504.2	PI0026504.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
cellular_component	GO:0016021	integral component of membrane