PI0026309 (gene) Melon (PI 482460) v1

Overview
NamePI0026309
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Locationchr06: 13686805 .. 13693343 (-)
RNA-Seq ExpressionPI0026309
SyntenyPI0026309
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTACCTTATTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGTAAAATGTGGGGTGTGCGGTCTAATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGCCGGTTGGAGAGACAACCCTAAACTTAGATGGGGAAACGACAACCAACAACCTGCACAAGCAACTTCATCTTCAAATAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACAGTTTCTTTTCAAAATGAAATGAAACAGCAAATATCTCAATTAACAAATGCCATAAGTAAACTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGATCACGCAAACGTAAGTGCCATCTCGCTCAGGAGCGGTAAAACTCTGGAAACCCCTTCAAGCGAAGAAAAGGTATCTTCTACCCCTGTCCTTCTAGAAGATGAAAATAAGAAAAAGGAAGAAAATCCAGAAACTTATGCTTCACCATCTTCATCAAAAGGTAAACCTAAAACTTTTGATTATTCTCCTTTTATCCCTAAAGCTCCTTTTTCTTCCAGGTTAGCCTCTAAAAGAAAGAATCGCCGAAGGAAGAAGAACGTTTGGAGATGTTCAGAAAAGTGCAAATAAACCTGCTTCTGCTAGACGCAATACAACAAGTCCCGAGGTATGCGAAGTTCTTTAAGGAATTTTGCACCAACAAGAGAAAAATCAAAGAAAAAGCGATGGTAAGTCACAACGTTTCTGCTCTTCTTAAAACTTCAATACCTGCAAAACAGAACGATCCAGATATGTTTTCCCTTCCTTGTATTATAGGAAATAGACAAATTTCAAATGCCATGCTAGACTTAGGAGCCTCTATTAATGTCATGCCTTACTCTGTTTTTAAAGATCTTGAATTAAATAATCTGCAAAAAACAAATGTATGCATTGAACTTGCTGATAGATCTTTCATATCTCCGCTAGGAATAGTTGAAGATGTACTAGTCAAAGTAGATAAACTAATATTTCCTGCGGACTTTTATATTTTAGAAATGAATGATGCATGTGTAAAACCTTCCCATTCAATTCTTCTAGGAAGACCTTTTCTTAAGACTGCTAAAGCTATCATAGATGTAGACAAAGGTTGTCTTAGTGTGGAATTCGATGGAGACATCGTGACATTTAATATTTTTGAATCTATGAAATTTCCTGAAGAATGTCTATCTCTATGCTCCTTACAATTGCATGAAGAATTTGAACAATTTCCTATAAATAATGAATTTGCTAAACAAGACTTAGATGAGATTGAAGAAAATATTTGTTTGCATGAATTTAACGAAGAAAAAGAAATTGTAGAAGTAGAAATGAATGAAGAACCAAATCTTGATGGAATTGACCCTAACTCCATTTCTTTTTCTCCCCAGGAACCAGGGATCGAGCTTAAGACTCTCCCTCCAAATTTGAAATACGTATTCTTAGGAGAAAAGAATACGCTTCCTGTAATAATTTCCACGGAACTACGCCAAGAAGAAGAAGAAAGACTAATCAAAGTCTTAACAAATAAAAGAAAAGCAATAGGATGGACTTTAGAAGACCTAAAAGGTATTTCCCCTTCTTTTTGCACTCATAGAATTATTCTAGAAGAAGGAGCCAAAGATAAAGTCCAATCACAAAGAAGGCTGAACCCCGTATTGAGAGACGTTGTCTTGAAAGAGATACTGAAATTAAAAGATGCTGGGATTATCTACCCTATCCCCGATAGTACATGGGTAAGTCCAATCCAGGTTGTGCCAAAAAAGACGGGAATGACGGTGATAGAAAATGAAAAAGGCGAAATGATCCCAACACGAGTACAAAACGACTGGAGAATGTGCATCGACTACCGCAAATTAAACGAGGTAACAAAGAAAGATCACTTTCCTTTACCTTTCTTAGATCAAATGATTGAATTCCTAGCCGGTAGGTCATATTTTTGCTTTTTAGATGGCTTTTCTGGATTTTATCAAATACCAATTGCATGCGAAGATCAAAGTAAAACTACATTTACATGCGATTACGGTACTTATGCATTTAGCGTATGCCATTTGGATTATGCAACGCACCTAGCACATTCCAACGCTGTATGATGAGTATTTTTTCTGATTTCATGCATAGAAGTCTTTATGGATGACTTTACTGTTTATGGTGATAATTTCGATGCATGCTTAAATAGCTTAGAACAAATTTTAAATAGATGCATAGAAACCAACTTAGTTTTAAACTATGAAAAATGTCACTTTATGGTTTCTCATGGCATAGTTTTAGGACATCTAGTTTCATCTAAAGGAATAGAAGTTGATAAAGCAAAAATTGATATAATTCAAAAACTACCATATCCAAAATGCTTAAAAGCCGTTAGATCATTTCTAGGAAGTGTTGGCTTTTATAGAAGATTTATTAAAGATTTCTCTAGAATTGCTTTACCACTAACTTCTCTTCTCTAGAAAGATGTGCCTTTTGTCATAAATGACAAATGCAAGAAAGCATTTGATGAGCTCAAATCGAGGTTAGTATCTACTCCTATACTTTAATCTCCTAACTGAAATTTACCTTTCAAAATCATGTGTGATGCTCCTAACTTAGCATTAGGAGCAGTATTAGGGCAAAGAGTAGATAAGAAATTGCGTGCCATCTATTATGCATCTAGAACTTTAAATCAAGCGCAATCGAATTACACCACAACAGAAAAAGAATTTCTTGCTATAGTCTTTGCATTAGACAAATTTAGAAGCTATGTGATAGGCTCACCAATCATCATTTACACTGACCACGTCGCAGTTAGGTACTTAGTTTCGAAGAAAGAATCAAAACCTAGGCTAGTTAGATGGGTTTTGCTTCTACAAGAATTTAACCTAACAATTAAAGATAGAAAAGGAGCCAACAATGTCATAGCAGATAACATTGCCATAGCAGATCATCTTAGCAGAATAGTGCAAGAACCTGAAAATTCACCCATAAGAGAAGACTTCCCTGATGAACATCTCTTTCAAACCAACATTTCAATACCATGGTATGCCGACCTTGTGAATTACATCACAACAGGTAACTATCCTCCTGATTTTTCTTTCTCTCAAAAATCTAAATTACGTAGTGATGCCAAGTATTACTTCTGGGAATCTTCATTCCTTTGGAAATACTGTCTAGATCAAATAATTAGAAAATGTGTCCCTGAGCATGAATATAATTCAATTCTATCGTTTTGTCATTCTCATGCATGTGGAGGGCATTTTAGTCTAAAAAGAACAGCTAGGAAAATTTTAGATAGCGAATTTTTCTGGAAAACTTTATTTGCTGATTCTTATAAATTCTGCAAAGCATATGAAAATTGTCAAAGGACAGGATCCCTATCTAGAAGAAATGAAATGCCTTTAAACCCAATTTTAACTTGCGAAATATTTGATGTATGGGGTATGGATTTCATTGGTCATTTTCCTTCTTCACATGGCTATCTATATATCCTGCTAGCTGTTGATTACGTTTCAAAATGGATCGAAGCAATCCCCACAAGGACTAATAATTCTTCCACTGTTTTAGGATTCCTCATTTCTAATATCTTTTCTAGATTTGGCATCCCTCGTGCAATCATAAGCGACCAAGGAACTCATTTTTGCAACAAAACCATTGAGGCGCTAATGAGAAAATACGGAGTCCATCACCGTGTTTCCACTCTTTATCATCCTCAAGCAAATGGTCAAGCAGAAGCCTCAAACAAAGAAATCAAAAACATCTTGGAGAAAACAGTCAACACAAGCAGAAAAGACTGGAGCTCGCGCTTGAACGATGCATTGTGGGCATACCGAACTGCCTACAAAACTCCAATCGGTACTTCTCCATTTAAACTTGTGTTTGGTAAGCCTTGCCATTTGCCTGTAGAAATAGAACATAAAGCATATTGAGCAATTAGGCAATGCAACTATAATCTCCTAGACGCCGGAAATAAAAGATTCCTTGATATGCTAGAATTAGAAGAATTAAGATTAGAAGCATATGAAAATTCTAAGATTTACAAAGAAAAGACAAAACTTTTGCATGATAAGAAAATCCTTAGAAAACAATTTCAAATAGGTCAAAAAGTGCTTCTTTATAATTCTTCTATAAATTTAATGCCTGGAAAGTTAAAATCAAAATGGATAGGACCTTTTGTTGTAACTAACTTTTCTACCTTTGGTGTAGTTTCCATTAAAAGTTTGCATACAGGAAAGTTTTTCAAAGTCAATGGGCATAGACTTAAAATCTTCCACGAAGGAGAGACCGCTCAACAAAACTCAATAGAAGTCCTCACTCTCCCCTTCTACAAATAGCCCGAAACCACGGTCGAGCTACGACCTTAAAAATTTGCACTTCCTGGAGGCAGCCAGGCGTCAAAATTTTAATTGCTTTCTGTCTTTACTTTCTCTAAATTCTATCTTTAAATTTTTAGCATTCTAATAAATCTAATAGACTTTCCAATTTTTCTCATACAGGAAAGTCATAACAATTTCACTCAAAGAGGGTATCAAATCCAAAAGAATCTCGAAGGCAACAACAACTTTGCTTAAAGGATTTCAATTCTCAAAAGCAAGGGGAGTTTTTCTATTCCCCTTATCTTTTCAGCTAGCAATTAATATGCTTTGAGGACAAAGTCATCTTTTAAGTGAGGGGTGTTGGGTATTCCTTTAATTTTTGCTTTAATTGCCTTGCATATCACTTGCATGTTTATAAGTAGAAACCCAAAAATGCATATCTCAAAATTTTTTGACAATGCTTAAATGTCTAAATTCCTTTGAAGCCTAAAGCACACAAAAAATAAAAATAAAAATAAATAAAAATAATACAAATATGCATTGAATTTTTACCTTACCCAAGACTGAATGCGTGACTGAAAATTATGAATGCTTGCTTTATTGATTGATTGCATGTACAAAAACAAAAGAAAAATGCATGGATGTTTTTCCTTAGCAAAGGTCTACATCATGATTGCCTATGATACACTCTTCTAAGTAATTTTTGTCTTTACTTTTTAATCGAATAAAGAACCATGTAGAAATTAAGCTTGATTTTTAAAACTTTTCACCAATGACCATGAATTAGAAAAAACCCCTTTTCTAGCCATAACGAACCTAGAATCCTTCAAAAGAGAGTAGGACGCCTAAATTCGCTTGCCATCACCTCGAAAGAACGGTCAAACATAGAAACTATTAGAACAAAGCCAAGCTTAAGAGTTAGCCAAACCGGGGCTAAGCAAATGCTAGCTACCAAAAATAGAATCCCAAATCAAAAGTAGCAAAAGCATACTTTTAGCAATGGAAAAGTCCATATATTCTCTCACAAAAAATATAAAATATATATATGAATATATATTTATATATTTGCAAAAAAAAAAAAAAAAAAAGAGGGAAAATTCTAGTACGGTTAAGTCGAACGATAGGATTTTTTTCGTGATCAGTTAGGATTACCTGATGTTAGTGTGGTATGAATCCCTACGAAAAAAGCCTATCCTTTGCCTTAGTTAAACAAGATACAAACTCTAAACCTGGAATTTTCTATATTAGCTTCAATGCATTGATCGAGGGCCAAGTATAAGGAGGGATCCTTCCCGTTTCAGAGTAGAGAGAAAGCAAGCCTAGGGCGTTTTTTAATTCTTTCGAAGCATGTCTAGTGAGTCGGAGTAGCGAAAATAGGTCGTTTCTTCTAAACATGACCACCGTTGATCGAAACTTCTTAAAAATCAAATCCTTGATCAATCGCTGGACTCTTTTGCACATTTAAAACAAAATTCAAAGATTAATAGTATGACTGTTAAGGCATGAATATCCTACTTTGCATATCAATTTGAAAACATCAACAAAAGTTTGCATGAATGCTTGAGAAATTTAATTCCTGCAAATGCATGAATACCTTGCATGATGAATGAATGAATGTTAGTACATATACACTTTAAATCTTTACCTTAATCGGGATGATCAAGATTTAAGTGAGGGGTTTTGATAGAACTATTTTCATAGGAAAATATCTATCTTGATTAATAATAATAAGTTGCAAATACTTATCAATATTGTATTTTGTATAGGATATAACACAAAGCCCCTCCACAAGCCCTTATATGCAAAAGTAAGCTAAAACAAGCTTCTTGCGGCCAAATCTGTGAAATACAAACTCAAGGGCAAAACAGTAATCTTCCCAAAGGAATTCAAAAATCCTCTTCGCGACAAAACTATCCTAGATTGCGTAGCTCATCGCAAACTGCATACTTCGCGAGGCAATGCTTCATGACTCGAGCTTCGCGAGATACTTCATATGCAAAAGTACACACTTCCCTTACCGCATATATACTCATTCGCCAGCTCACTCACCCAGCTCAAGCTTACTCATTTCACAAGACGCATGCAACCTTCATCAGCTCGCAAGATGCATCGCAGCCTTCAGCTTCAGCTTGCCGAAAAACAGTTACAACCGCCAAGCCCATTAGGCCCAAGACCCAAGCCCATTGTAACAAATAA

mRNA sequence

ATGACTACCTTATTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGTAAAATGTGGGGTGTGCGGTCTAATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGCCGGTTGGAGAGACAACCCTAAACTTAGATGGGGAAACGACAACCAACAACCTGCACAAGCAACTTCATCTTCAAATAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACAGTTTCTTTTCAAAATGAAATGAAACAGCAAATATCTCAATTAACAAATGCCATAAGTAAACTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGATCACGCAAACGTAAGTGCCATCTCGCTCAGGAGCGGTAAAACTCTGGAAACCCCTTCAAGCGAAGAAAAGGTATCTTCTACCCCTGTCCTTCTAGAAGATGAAAATAAGAAAAAGGAAGAAAATCCAGAAACTTATGCTTCACCATCTTCATCAAAAGCCCCTCCACAAGCCCTTATATGCAAAAGTAAGCTAAAACAAGCTTCTTGCGGCCAAATCTGTGAAATACAAACTCAAGGGCAAAACAGTAATCTTCCCAAAGGAATTCAAAAATCCTCTTCGCGACAAAACTATCCTAGATTGCGTAGCTCATCGCAAACTGCATACTTCGCGAGGCAATGCTTCATGACTCGAGCTTCGCGAGATACTTCATATGCAAAAGTACACACTTCCCTTACCGCATATATACTCATTCGCCAGCTCACTCACCCAGCTCAAGCTTACTCATTTCACAAGACGCATGCAACCTTCATCAGCTCGCAAGATGCATCGCAGCCTTCAGCTTCAGCTTGCCGAAAAACAGTTACAACCGCCAAGCCCATTAGGCCCAAGACCCAAGCCCATTGTAACAAATAA

Coding sequence (CDS)

ATGACTACCTTATTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGTAAAATGTGGGGTGTGCGGTCTAATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGCCGGTTGGAGAGACAACCCTAAACTTAGATGGGGAAACGACAACCAACAACCTGCACAAGCAACTTCATCTTCAAATAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACAGTTTCTTTTCAAAATGAAATGAAACAGCAAATATCTCAATTAACAAATGCCATAAGTAAACTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGATCACGCAAACGTAAGTGCCATCTCGCTCAGGAGCGGTAAAACTCTGGAAACCCCTTCAAGCGAAGAAAAGGTATCTTCTACCCCTGTCCTTCTAGAAGATGAAAATAAGAAAAAGGAAGAAAATCCAGAAACTTATGCTTCACCATCTTCATCAAAAGCCCCTCCACAAGCCCTTATATGCAAAAGTAAGCTAAAACAAGCTTCTTGCGGCCAAATCTGTGAAATACAAACTCAAGGGCAAAACAGTAATCTTCCCAAAGGAATTCAAAAATCCTCTTCGCGACAAAACTATCCTAGATTGCGTAGCTCATCGCAAACTGCATACTTCGCGAGGCAATGCTTCATGACTCGAGCTTCGCGAGATACTTCATATGCAAAAGTACACACTTCCCTTACCGCATATATACTCATTCGCCAGCTCACTCACCCAGCTCAAGCTTACTCATTTCACAAGACGCATGCAACCTTCATCAGCTCGCAAGATGCATCGCAGCCTTCAGCTTCAGCTTGCCGAAAAACAGTTACAACCGCCAAGCCCATTAGGCCCAAGACCCAAGCCCATTGTAACAAATAA

Protein sequence

MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPKLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKVSSTPVLLEDENKKKEENPETYASPSSSKAPPQALICKSKLKQASCGQICEIQTQGQNSNLPKGIQKSSSRQNYPRLRSSSQTAYFARQCFMTRASRDTSYAKVHTSLTAYILIRQLTHPAQAYSFHKTHATFISSQDASQPSASACRKTVTTAKPIRPKTQAHCNK
Homology
[Close]
BLAST of PI0026309 vs. ExPASy TrEMBL
Match: A0A5A7VQ60 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1704G00030 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 6.4e-65
Identity = 127/180 (70.56%), Postives = 157/180 (87.22%), Query Frame = 0 

Query: 2   TTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPK 61
           TTLLTSFVQG  +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPHSNTYN+GWRDNP 
Sbjct: 209 TTLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIEDVNIVRRYDPHSNTYNSGWRDNPN 268

Query: 62  LRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQNEMKQQISQLTNAISKLEGKG 121
           LRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQ++QLT AISK++GKG
Sbjct: 269 LRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 328

Query: 122 KLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK 181
           KLPAQ DHANVSAISLRSGK L+TP++ E+KV+S P+ L  +N+ KEE  ET  SPS+SK
Sbjct: 329 KLPAQLDHANVSAISLRSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSK 388

[Close]
BLAST of PI0026309 vs. ExPASy TrEMBL
Match: A0A5A7VE49 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00600 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.4e-64
Identity = 127/181 (70.17%), Postives = 157/181 (86.74%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPH NTYN+GWRDNP
Sbjct: 33  MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKYPEVIEDVNIVRRYDPHGNTYNSGWRDNP 92

Query: 61  KLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQNEMKQQISQLTNAISKLEGK 120
           KLRWGNDNQ+  QA S+S+NQGTNLED++KALA NT+SFQ EMKQQ++QLT AISK++GK
Sbjct: 93  KLRWGNDNQKHIQAPSTSSNQGTNLEDIIKALAINTLSFQQEMKQQMTQLTTAISKMDGK 152

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSS 180
           GKLPAQP+HANVSAISLRSGK L+TP++ E+KV+S  + L  +N+ KEEN ET  SPS+ 
Sbjct: 153 GKLPAQPNHANVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNESKEENVETNPSPSNI 212

[Close]
BLAST of PI0026309 vs. ExPASy TrEMBL
Match: E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.2e-64
Identity = 126/181 (69.61%), Postives = 156/181 (86.19%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDNP
Sbjct: 57  MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116

Query: 61  KLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQNEMKQQISQLTNAISKLEGK 120
            LRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++QLT AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSS 180
           GKLPAQPD+ANVSAISLRSGK L+TP++ E+KV+S  + L  +N+ KEE  ET  SPS+S
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNESKEEKVETNLSPSNS 236

[Close]
BLAST of PI0026309 vs. ExPASy TrEMBL
Match: A0A5D3DCG3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold860G00100 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.6e-63
Identity = 124/181 (68.51%), Postives = 153/181 (84.53%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNP 60
           MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNP
Sbjct: 1   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60

Query: 61  KLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQNEMKQQISQLTNAISKLEGK 120
            LRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++QLT  ISK++GK
Sbjct: 61  NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSS 180
           GKL AQPDHANVS ISLRS K L+TP++ E+KV+S P+ L  +N+ KEE  ET  SPS+S
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNS 180

[Close]
BLAST of PI0026309 vs. ExPASy TrEMBL
Match: A0A1S4E3R2 (uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.6e-63
Identity = 124/181 (68.51%), Postives = 153/181 (84.53%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNP 60
           MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNP
Sbjct: 1   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60

Query: 61  KLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQNEMKQQISQLTNAISKLEGK 120
            LRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++QLT  ISK++GK
Sbjct: 61  NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSS 180
           GKL AQPDHANVS ISLRS K L+TP++ E+KV+S P+ L  +N+ KEE  ET  SPS+S
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNS 180

[Close]
BLAST of PI0026309 vs. NCBI nr
Match: KAA0067359.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 257.7 bits (657), Expect = 1.3e-64
Identity = 127/180 (70.56%), Postives = 157/180 (87.22%), Query Frame = 0 

Query: 2   TTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPK 61
           TTLLTSFVQG  +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPHSNTYN+GWRDNP 
Sbjct: 209 TTLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIEDVNIVRRYDPHSNTYNSGWRDNPN 268

Query: 62  LRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQNEMKQQISQLTNAISKLEGKG 121
           LRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQ++QLT AISK++GKG
Sbjct: 269 LRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 328

Query: 122 KLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSSK 181
           KLPAQ DHANVSAISLRSGK L+TP++ E+KV+S P+ L  +N+ KEE  ET  SPS+SK
Sbjct: 329 KLPAQLDHANVSAISLRSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSK 388

[Close]
BLAST of PI0026309 vs. NCBI nr
Match: KAA0065554.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 256.5 bits (654), Expect = 3.0e-64
Identity = 127/181 (70.17%), Postives = 157/181 (86.74%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPH NTYN+GWRDNP
Sbjct: 33  MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKYPEVIEDVNIVRRYDPHGNTYNSGWRDNP 92

Query: 61  KLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQNEMKQQISQLTNAISKLEGK 120
           KLRWGNDNQ+  QA S+S+NQGTNLED++KALA NT+SFQ EMKQQ++QLT AISK++GK
Sbjct: 93  KLRWGNDNQKHIQAPSTSSNQGTNLEDIIKALAINTLSFQQEMKQQMTQLTTAISKMDGK 152

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSS 180
           GKLPAQP+HANVSAISLRSGK L+TP++ E+KV+S  + L  +N+ KEEN ET  SPS+ 
Sbjct: 153 GKLPAQPNHANVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNESKEENVETNPSPSNI 212

[Close]
BLAST of PI0026309 vs. NCBI nr
Match: ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 255.0 bits (650), Expect = 8.6e-64
Identity = 126/181 (69.61%), Postives = 156/181 (86.19%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDNP
Sbjct: 57  MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116

Query: 61  KLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQNEMKQQISQLTNAISKLEGK 120
            LRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++QLT AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSS 180
           GKLPAQPD+ANVSAISLRSGK L+TP++ E+KV+S  + L  +N+ KEE  ET  SPS+S
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNESKEEKVETNLSPSNS 236

[Close]
BLAST of PI0026309 vs. NCBI nr
Match: XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 3.3e-63
Identity = 124/181 (68.51%), Postives = 153/181 (84.53%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNP 60
           MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNP
Sbjct: 1   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60

Query: 61  KLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQNEMKQQISQLTNAISKLEGK 120
            LRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++QLT  ISK++GK
Sbjct: 61  NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSS 180
           GKL AQPDHANVS ISLRS K L+TP++ E+KV+S P+ L  +N+ KEE  ET  SPS+S
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNS 180

[Close]
BLAST of PI0026309 vs. NCBI nr
Match: KAA0051761.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.1 bits (645), Expect = 3.3e-63
Identity = 124/181 (68.51%), Postives = 153/181 (84.53%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGNVKVVKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNP 60
           MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNP
Sbjct: 1   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60

Query: 61  KLRWGNDNQQPAQATSSSNNQGTNLEDLVKALATNTVSFQNEMKQQISQLTNAISKLEGK 120
            LRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++QLT  ISK++GK
Sbjct: 61  NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSS-EEKVSSTPVLLEDENKKKEENPETYASPSSS 180
           GKL AQPDHANVS ISLRS K L+TP++ E+KV+S P+ L  +N+ KEE  ET  SPS+S
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNS 180

The following BLAST results are available for this feature:
BLAST of PI0026309 vs.
Match NameE-valueIdentityDescription
BLAST of PI0026309 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VQ606.4e-6570.56Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7VE491.4e-6470.17Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
E5GBZ44.2e-6469.61Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5D3DCG31.6e-6368.51Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A1S4E3R21.6e-6368.51uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=... [more]
BLAST of PI0026309 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067359.11.3e-6470.56retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotranspos... [more]
KAA0065554.13.0e-6470.17retrotransposon gag protein [Cucumis melo var. makuwa][more]
ADN33993.18.6e-6469.61retrotransposon gag protein [Cucumis melo subsp. melo][more]
XP_016902871.13.3e-6368.51PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo][more]
KAA0051761.13.3e-6368.51retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotranspos... [more]
BLAST of PI0026309 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 100..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..154
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 208..229
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..171

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0026309.1PI0026309.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding