PI0026247 (gene) Melon (PI 482460) v1

Overview
NamePI0026247
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionSWIM-type domain-containing protein
Locationchr02: 14175773 .. 14176041 (+)
RNA-Seq ExpressionPI0026247
SyntenyPI0026247
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCTACTTATTGTCCAAATACAAGTGTTGTTATGACGGGCGCTTCCATCCGATACAACATCCAGACTACTGGCCAGAGTTATCATTCACTGAAGTTCGCCCAAATGCGAACTTACTTAGAGAACCCGGTCGACCCAGAACTACGAGGATCCAGAATGAAATGGATTGGAAGGAGTCCGGTCAATTAGTAAGATGCACGATATGTAAAGCGGAAGGACACAACAGACGTACTTATCCTCAACGTGCTTCTTCTTCAAGACATTGA

mRNA sequence

ATGACTGCTACTTATTACTACTGGCCAGAGTTATCATTCACTGAAGTTCGCCCAAATGCGAACTTACTTAGAGAACCCGGTCGACCCAGAACTACGAGGATCCAGAATGAAATGGATTGGAAGGAGTCCGGTCAATTAGTAAGATGCACGATATGTAAAGCGGAAGGACACAACAGACGTACTTATCCTCAACGTGCTTCTTCTTCAAGACATTGA

Coding sequence (CDS)

ATGACTGCTACTTATTACTACTGGCCAGAGTTATCATTCACTGAAGTTCGCCCAAATGCGAACTTACTTAGAGAACCCGGTCGACCCAGAACTACGAGGATCCAGAATGAAATGGATTGGAAGGAGTCCGGTCAATTAGTAAGATGCACGATATGTAAAGCGGAAGGACACAACAGACGTACTTATCCTCAACGTGCTTCTTCTTCAAGACATTGA

Protein sequence

MTATYYYWPELSFTEVRPNANLLREPGRPRTTRIQNEMDWKESGQLVRCTICKAEGHNRRTYPQRASSSRH
Homology
[Close]
BLAST of PI0026247 vs. ExPASy TrEMBL
Match: A0A0A0KT57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582740 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.2e-25
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 1  MTATYYYWPELSFTEVRPNANLLREPGRPRTTRIQNEMDWKESGQLVRCTICKAEGHNRR 60
          M AT+YYW E+SFTEVRPNA+LL+EPGRPRTTRIQNEMDWKES Q +RCT+ K EGHNRR
Sbjct: 1  MNATFYYWLEISFTEVRPNADLLKEPGRPRTTRIQNEMDWKESSQSLRCTVYKVEGHNRR 60

Query: 61 TYPQRA-SSSRH 72
          T PQRA SSSRH
Sbjct: 61 TCPQRASSSSRH 72

[Close]
BLAST of PI0026247 vs. ExPASy TrEMBL
Match: A0A5D3BS92 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00230 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.7e-24
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNANLLREPGRPRTTRIQNEMDWKESGQLVRCTICKAEGHNRRTYPQRA 66
           YWPELSFTEVRPNA+LL+ PGRPRTTRI NEMDWKESGQ +RCTICK EGHNRRT PQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]
BLAST of PI0026247 vs. ExPASy TrEMBL
Match: A0A5A7TN56 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00290 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.7e-24
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNANLLREPGRPRTTRIQNEMDWKESGQLVRCTICKAEGHNRRTYPQRA 66
           YWPELSFTEVRPNA+LL+ PGRPRTTRI NEMDWKESGQ +RCTICK EGHNRRT PQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]
BLAST of PI0026247 vs. ExPASy TrEMBL
Match: A0A5A7SW50 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001280 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.0e-24
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNANLLREPGRPRTTRIQNEMDWKESGQLVRCTICKAEGHNRRTYPQRA 66
           YWPELSFTE+RPNA+LL+ PGRPRTTRI NEMDWKESGQ +RCTICK EGHNRRT PQRA
Sbjct: 165 YWPELSFTEIRPNADLLKGPGRPRTTRIFNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 224

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 225 SSSSRH 230

[Close]
BLAST of PI0026247 vs. ExPASy TrEMBL
Match: A0A5A7VDU8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00030 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 56/66 (84.85%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNANLLREPGRPRTTRIQNEMDWKESGQLVRCTICKAEGHNRRTYPQRA 66
           YWPELSFTEVRPNANLL+ P RPRTTRI NEMDWKESGQ +RCTICK EGHNRR  PQRA
Sbjct: 200 YWPELSFTEVRPNANLLKGPDRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRICPQRA 259

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 260 SSSSRH 265

[Close]
BLAST of PI0026247 vs. NCBI nr
Match: XP_031737534.1 (uncharacterized protein LOC116402427 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 6.7e-25
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNANLLREPGRPRTTRIQNEMDWKESGQLVRCTICKAEGHNRRTYPQRA 66
           YWPE+SFTEVRPNA+LL+ PGRPRTTRIQNEMDWKES Q +RCTICK EGHNRRT P+RA
Sbjct: 569 YWPEISFTEVRPNADLLKGPGRPRTTRIQNEMDWKESSQSIRCTICKVEGHNRRTCPERA 628

Query: 67  SSSRH 72
           SSSRH
Sbjct: 629 SSSRH 633

[Close]
BLAST of PI0026247 vs. NCBI nr
Match: KGN51592.1 (hypothetical protein Csa_008873 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.5e-24
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 1  MTATYYYWPELSFTEVRPNANLLREPGRPRTTRIQNEMDWKESGQLVRCTICKAEGHNRR 60
          M AT+YYW E+SFTEVRPNA+LL+EPGRPRTTRIQNEMDWKES Q +RCT+ K EGHNRR
Sbjct: 1  MNATFYYWLEISFTEVRPNADLLKEPGRPRTTRIQNEMDWKESSQSLRCTVYKVEGHNRR 60

Query: 61 TYPQRA-SSSRH 72
          T PQRA SSSRH
Sbjct: 61 TCPQRASSSSRH 72

[Close]
BLAST of PI0026247 vs. NCBI nr
Match: KAA0044308.1 (uncharacterized protein E6C27_scaffold46G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 5.7e-24
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNANLLREPGRPRTTRIQNEMDWKESGQLVRCTICKAEGHNRRTYPQRA 66
           YWPELSFTEVRPNA+LL+ PGRPRTTRI NEMDWKESGQ +RCTICK EGHNRRT PQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]
BLAST of PI0026247 vs. NCBI nr
Match: TYK02543.1 (uncharacterized protein E5676_scaffold201G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 5.7e-24
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNANLLREPGRPRTTRIQNEMDWKESGQLVRCTICKAEGHNRRTYPQRA 66
           YWPELSFTEVRPNA+LL+ PGRPRTTRI NEMDWKESGQ +RCTICK EGHNRRT PQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]
BLAST of PI0026247 vs. NCBI nr
Match: KAA0033661.1 (hypothetical protein E6C27_scaffold239G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 7   YWPELSFTEVRPNANLLREPGRPRTTRIQNEMDWKESGQLVRCTICKAEGHNRRTYPQRA 66
           YWPELSFTE+RPNA+LL+ PGRPRTTRI NEMDWKESGQ +RCTICK EGHNRRT PQRA
Sbjct: 165 YWPELSFTEIRPNADLLKGPGRPRTTRIFNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 224

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 225 SSSSRH 230

The following BLAST results are available for this feature:
BLAST of PI0026247 vs.
Match NameE-valueIdentityDescription
BLAST of PI0026247 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT577.2e-2580.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582740 PE=4 SV=1[more]
A0A5D3BS922.7e-2486.36SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7TN562.7e-2486.36SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5A7SW508.0e-2484.85SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5A7VDU82.3e-2384.85SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of PI0026247 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031737534.16.7e-2584.62uncharacterized protein LOC116402427 [Cucumis sativus][more]
KGN51592.11.5e-2480.56hypothetical protein Csa_008873 [Cucumis sativus][more]
KAA0044308.15.7e-2486.36uncharacterized protein E6C27_scaffold46G00290 [Cucumis melo var. makuwa][more]
TYK02543.15.7e-2486.36uncharacterized protein E5676_scaffold201G00230 [Cucumis melo var. makuwa][more]
KAA0033661.11.6e-2384.85hypothetical protein E6C27_scaffold239G001280 [Cucumis melo var. makuwa][more]
BLAST of PI0026247 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0026247.1PI0026247.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding