PI0026091 (gene) Melon (PI 482460) v1

Overview


Name	PI0026091
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	nucleolar complex protein 3 homolog
Location	chr01: 7345297 .. 7345791 (+)
RNA-Seq Expression	PI0026091
Synteny	PI0026091

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAGAAACGTAACGAGAAACACAAGGTAATTCTACCGCCGGAGCTTCCACCAGAGGTTACCGAGGAAGAAATTGAGGTTTCCGATGAGGACTTGGAGTTTGTTAAGGAGAATCAAGACTATGTCGTCTCTGTTTCTCGTCTAGACACTAAATCCATAACCAAGTTTGTATTCAATCTCAATAAGCTACTTTTGGAATAGTGTTTTTTAATTGCCGCCTTACGGGAGAGTGAAAAATGAACATTATAGTTTTTGTGATCCTTAGAACATTCGGTAAGAAGATTACTTAGGTGCTCTAATTATCTACTGTACACTTCAATTTGTTGTTCCTGAAGGCATGTTAAGCGGGTTGCTAATGTTGAAGACGACGCTTTGGAGGTTTTATACGAGAAGCGTCTGCGCAAGAAGCCAGTGGAGAAACATGAGGAAGGAAATGAGCTCCAAGTTGATCTTGTGGATGCTCTTCTTGTCAAAACACTTGATGGAAAATGA

mRNA sequence

ATGAGGAAGAAACGTAACGAGAAACACAAGGTAATTCTACCGCCGGAGCTTCCACCAGAGGTTACCGAGGAAGAAATTGAGGTTTCCGATGAGGACTTGGAGTTTGTTAAGGAGAATCAAGACTATGTCGTCTCTGTTTCTCGTCTAGACACTAAATCCATAACCAAGCATGTTAAGCGGGTTGCTAATGTTGAAGACGACGCTTTGGAGGTTTTATACGAGAAGCGTCTGCGCAAGAAGCCAGTGGAGAAACATGAGGAAGGAAATGAGCTCCAAGTTGATCTTGTGGATGCTCTTCTTGTCAAAACACTTGATGGAAAATGA

Coding sequence (CDS)

ATGAGGAAGAAACGTAACGAGAAACACAAGGTAATTCTACCGCCGGAGCTTCCACCAGAGGTTACCGAGGAAGAAATTGAGGTTTCCGATGAGGACTTGGAGTTTGTTAAGGAGAATCAAGACTATGTCGTCTCTGTTTCTCGTCTAGACACTAAATCCATAACCAAGCATGTTAAGCGGGTTGCTAATGTTGAAGACGACGCTTTGGAGGTTTTATACGAGAAGCGTCTGCGCAAGAAGCCAGTGGAGAAACATGAGGAAGGAAATGAGCTCCAAGTTGATCTTGTGGATGCTCTTCTTGTCAAAACACTTGATGGAAAATGA

Protein sequence

MRKKRNEKHKVILPPELPPEVTEEEIEVSDEDLEFVKENQDYVVSVSRLDTKSITKHVKRVANVEDDALEVLYEKRLRKKPVEKHEEGNELQVDLVDALLVKTLDGK

Homology

[Close]

BLAST of PI0026091 vs. ExPASy TrEMBL
Match: A0A5D3BSN6 (Nucleolar complex protein 3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00210 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.3e-43
Identity = 97/107 (90.65%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MRKKRNEKHKVILPPELPPEVTEEEIEVSDEDLEFVKENQDYVVSVSRLDTKSITKHVKR 60
           MRKKRNEKHK+ILPP+LPPEVTEEEIEVSDEDLEF+KENQDY  SV RLDTKSITKHVKR
Sbjct: 1   MRKKRNEKHKIILPPDLPPEVTEEEIEVSDEDLEFLKENQDYAASVFRLDTKSITKHVKR 60

Query: 61  VANVEDDALEVLYEKRLRKKPVEKHEEGNELQVDLVDALLVKTLDGK 108
           VANVE+DALEVLYEKRLRKKPVEK EEGNELQVD VDAL VKTLDGK
Sbjct: 61  VANVEEDALEVLYEKRLRKKPVEKQEEGNELQVDPVDALPVKTLDGK 107

[Close]

BLAST of PI0026091 vs. ExPASy TrEMBL
Match: A0A5A7U5F2 (Nucleolar complex protein 3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G00450 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.3e-43
Identity = 97/107 (90.65%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MRKKRNEKHKVILPPELPPEVTEEEIEVSDEDLEFVKENQDYVVSVSRLDTKSITKHVKR 60
           MRKKRNEKHK+ILPP+LPPEVTEEEIEVSDEDLEF+KENQDY  SV RLDTKSITKHVKR
Sbjct: 1   MRKKRNEKHKIILPPDLPPEVTEEEIEVSDEDLEFLKENQDYAASVFRLDTKSITKHVKR 60

Query: 61  VANVEDDALEVLYEKRLRKKPVEKHEEGNELQVDLVDALLVKTLDGK 108
           VANVE+DALEVLYEKRLRKKPVEK EEGNELQVD VDAL VKTLDGK
Sbjct: 61  VANVEEDALEVLYEKRLRKKPVEKQEEGNELQVDPVDALPVKTLDGK 107

[Close]

BLAST of PI0026091 vs. ExPASy TrEMBL
Match: A0A1S3BGN9 (nucleolar complex protein 3 homolog OS=Cucumis melo OX=3656 GN=LOC103489642 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.3e-43
Identity = 97/107 (90.65%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MRKKRNEKHKVILPPELPPEVTEEEIEVSDEDLEFVKENQDYVVSVSRLDTKSITKHVKR 60
           MRKKRNEKHK+ILPP+LPPEVTEEEIEVSDEDLEF+KENQDY  SV RLDTKSITKHVKR
Sbjct: 1   MRKKRNEKHKIILPPDLPPEVTEEEIEVSDEDLEFLKENQDYAASVFRLDTKSITKHVKR 60

Query: 61  VANVEDDALEVLYEKRLRKKPVEKHEEGNELQVDLVDALLVKTLDGK 108
           VANVE+DALEVLYEKRLRKKPVEK EEGNELQVD VDAL VKTLDGK
Sbjct: 61  VANVEEDALEVLYEKRLRKKPVEKQEEGNELQVDPVDALPVKTLDGK 107

[Close]

BLAST of PI0026091 vs. ExPASy TrEMBL
Match: A0A0A0K7H5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238410 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.0e-42
Identity = 95/107 (88.79%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MRKKRNEKHKVILPPELPPEVTEEEIEVSDEDLEFVKENQDYVVSVSRLDTKSITKHVKR 60
           MRKKRNEKHKVILPP+LPPE+TEEEIEVSDEDLEFVK+NQDY  SV R+DTKSITKHVKR
Sbjct: 1   MRKKRNEKHKVILPPDLPPELTEEEIEVSDEDLEFVKKNQDYAASVFRIDTKSITKHVKR 60

Query: 61  VANVEDDALEVLYEKRLRKKPVEKHEEGNELQVDLVDALLVKTLDGK 108
           VANV++DALEVLYEKRLRKKPVEK EEGNELQVD VDAL VKTLDGK
Sbjct: 61  VANVDEDALEVLYEKRLRKKPVEKQEEGNELQVDPVDALPVKTLDGK 107

[Close]

BLAST of PI0026091 vs. ExPASy TrEMBL
Match: A0A6J1I5M5 (nucleolar complex protein 3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111470887 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.3e-37
Identity = 87/106 (82.08%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 2   RKKRNEKHKVILPPELPPEVTEEEIEVSDEDLEFVKENQDYVVSVSRLDTKSITKHVKRV 61
           +K+ NEK KVILPP+LPPEVTEEEIEVSDEDLEFVKENQDY VSV+RLDTKSITKHV RV
Sbjct: 3   KKRNNEKQKVILPPDLPPEVTEEEIEVSDEDLEFVKENQDYAVSVTRLDTKSITKHVTRV 62

Query: 62  ANVEDDALEVLYEKRLRKKPVEKHEEGNELQVDLVDALLVKTLDGK 108
           ANVE+DALEVLYEKRLRKKP+ K EE N+ QVD VDAL VKTL+G+
Sbjct: 63  ANVEEDALEVLYEKRLRKKPLPKPEEENKTQVDRVDALPVKTLEGE 108

[Close]

BLAST of PI0026091 vs. NCBI nr
Match: KAA0051103.1 (nucleolar complex protein 3-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 4.8e-43
Identity = 97/107 (90.65%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MRKKRNEKHKVILPPELPPEVTEEEIEVSDEDLEFVKENQDYVVSVSRLDTKSITKHVKR 60
           MRKKRNEKHK+ILPP+LPPEVTEEEIEVSDEDLEF+KENQDY  SV RLDTKSITKHVKR
Sbjct: 1   MRKKRNEKHKIILPPDLPPEVTEEEIEVSDEDLEFLKENQDYAASVFRLDTKSITKHVKR 60

Query: 61  VANVEDDALEVLYEKRLRKKPVEKHEEGNELQVDLVDALLVKTLDGK 108
           VANVE+DALEVLYEKRLRKKPVEK EEGNELQVD VDAL VKTLDGK
Sbjct: 61  VANVEEDALEVLYEKRLRKKPVEKQEEGNELQVDPVDALPVKTLDGK 107

[Close]

BLAST of PI0026091 vs. NCBI nr
Match: XP_008447119.1 (PREDICTED: nucleolar complex protein 3 homolog [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 4.8e-43
Identity = 97/107 (90.65%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MRKKRNEKHKVILPPELPPEVTEEEIEVSDEDLEFVKENQDYVVSVSRLDTKSITKHVKR 60
           MRKKRNEKHK+ILPP+LPPEVTEEEIEVSDEDLEF+KENQDY  SV RLDTKSITKHVKR
Sbjct: 1   MRKKRNEKHKIILPPDLPPEVTEEEIEVSDEDLEFLKENQDYAASVFRLDTKSITKHVKR 60

Query: 61  VANVEDDALEVLYEKRLRKKPVEKHEEGNELQVDLVDALLVKTLDGK 108
           VANVE+DALEVLYEKRLRKKPVEK EEGNELQVD VDAL VKTLDGK
Sbjct: 61  VANVEEDALEVLYEKRLRKKPVEKQEEGNELQVDPVDALPVKTLDGK 107

[Close]

BLAST of PI0026091 vs. NCBI nr
Match: TYK02693.1 (nucleolar complex protein 3-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 4.8e-43
Identity = 97/107 (90.65%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MRKKRNEKHKVILPPELPPEVTEEEIEVSDEDLEFVKENQDYVVSVSRLDTKSITKHVKR 60
           MRKKRNEKHK+ILPP+LPPEVTEEEIEVSDEDLEF+KENQDY  SV RLDTKSITKHVKR
Sbjct: 1   MRKKRNEKHKIILPPDLPPEVTEEEIEVSDEDLEFLKENQDYAASVFRLDTKSITKHVKR 60

Query: 61  VANVEDDALEVLYEKRLRKKPVEKHEEGNELQVDLVDALLVKTLDGK 108
           VANVE+DALEVLYEKRLRKKPVEK EEGNELQVD VDAL VKTLDGK
Sbjct: 61  VANVEEDALEVLYEKRLRKKPVEKQEEGNELQVDPVDALPVKTLDGK 107

[Close]

BLAST of PI0026091 vs. NCBI nr
Match: XP_004139830.1 (nucleolar complex protein 3 homolog [Cucumis sativus] >KGN44277.1 hypothetical protein Csa_015977 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 4.1e-42
Identity = 95/107 (88.79%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MRKKRNEKHKVILPPELPPEVTEEEIEVSDEDLEFVKENQDYVVSVSRLDTKSITKHVKR 60
           MRKKRNEKHKVILPP+LPPE+TEEEIEVSDEDLEFVK+NQDY  SV R+DTKSITKHVKR
Sbjct: 1   MRKKRNEKHKVILPPDLPPELTEEEIEVSDEDLEFVKKNQDYAASVFRIDTKSITKHVKR 60

Query: 61  VANVEDDALEVLYEKRLRKKPVEKHEEGNELQVDLVDALLVKTLDGK 108
           VANV++DALEVLYEKRLRKKPVEK EEGNELQVD VDAL VKTLDGK
Sbjct: 61  VANVDEDALEVLYEKRLRKKPVEKQEEGNELQVDPVDALPVKTLDGK 107

[Close]

BLAST of PI0026091 vs. NCBI nr
Match: XP_038888360.1 (nucleolar complex protein 3 homolog [Benincasa hispida])

HSP 1 Score: 179.5 bits (454), Expect = 1.5e-41
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 2   RKKRNEKHKVILPPELPPEVTEEEIEVSDEDLEFVKENQDYVVSVSRLDTKSITKHVKRV 61
           RK+ NEKHKVILPPELPPEVTEEEIEVSDEDLEFVKENQDY VSVSRLDTKSITKHV RV
Sbjct: 3   RKRNNEKHKVILPPELPPEVTEEEIEVSDEDLEFVKENQDYAVSVSRLDTKSITKHVTRV 62

Query: 62  ANVEDDALEVLYEKRLRKKPVEKHEEGNELQVDLVDALLVKTLDGK 108
           ANVE+DALEVLYEKRLRKKPVEK EE N+LQVD VDAL VKTLDGK
Sbjct: 63  ANVEEDALEVLYEKRLRKKPVEKQEEENKLQVDRVDALPVKTLDGK 108

[Close]

BLAST of PI0026091 vs. TAIR 10
Match: AT1G79150.1 (binding )

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-17
Identity = 56/106 (52.83%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 4   KRNEKHKVILPPELPPEVTEEEIEVSDEDLEFVKENQDYVVSVSRLDTKSITKHV-KRVA 63
           K   K KVI PP LPP+V EE+IE SDEDL++VKEN DY   VS++DT +I K    RV 
Sbjct: 3   KNRRKQKVIPPPLLPPDVAEEDIEFSDEDLKYVKENTDYAQFVSQIDTAAINKQCGGRVM 62

Query: 64  NVEDDALEVLYEKRLRKKPVEKHEEGN-ELQVDLVDALLVKTLDGK 108
            VED      YE+   K+   + E+GN E+ VD VD L VKTLDGK
Sbjct: 63  TVEDK-----YEEERSKRKTLQEEKGNGEILVDPVDVLPVKTLDGK 103

The following BLAST results are available for this feature:

BLAST of PI0026091 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BSN6	2.3e-43	90.65	Nucleolar complex protein 3-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7U5F2	2.3e-43	90.65	Nucleolar complex protein 3-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BGN9	2.3e-43	90.65	nucleolar complex protein 3 homolog OS=Cucumis melo OX=3656 GN=LOC103489642 PE=3...	[more]
A0A0A0K7H5	2.0e-42	88.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238410 PE=3 SV=1	[more]
A0A6J1I5M5	4.3e-37	82.08	nucleolar complex protein 3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111470887 ...	[more]

BLAST of PI0026091 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051103.1	4.8e-43	90.65	nucleolar complex protein 3-like protein [Cucumis melo var. makuwa]	[more]
XP_008447119.1	4.8e-43	90.65	PREDICTED: nucleolar complex protein 3 homolog [Cucumis melo]	[more]
TYK02693.1	4.8e-43	90.65	nucleolar complex protein 3-like protein [Cucumis melo var. makuwa]	[more]
XP_004139830.1	4.1e-42	88.79	nucleolar complex protein 3 homolog [Cucumis sativus] >KGN44277.1 hypothetical p...	[more]
XP_038888360.1	1.5e-41	90.57	nucleolar complex protein 3 homolog [Benincasa hispida]	[more]

BLAST of PI0026091 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79150.1	2.8e-17	52.83	binding	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016903	Nucleolar complex-associated protein 3	PANTHER	PTHR14428	NUCLEOLAR COMPLEX PROTEIN 3	coord: 4..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026091.1	PI0026091.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006270	DNA replication initiation
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003682	chromatin binding