PI0025924 (gene) Melon (PI 482460) v1

Overview


Name	PI0025924
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr04: 878900 .. 879103 (+)
RNA-Seq Expression	PI0025924
Synteny	PI0025924

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATCGAGAAAACAAGAAAACAAATGAAACCCATCAACAGGGCTGGGCAACACCAAGAAATCACCGAAGATCAAGTTAATGCGGGAACAGTTTGGCTGGAGAAATGTGATAAAAAATTTAGATTGAATACACAAATGGAAGGTCCCATAAACATCAACGAATCGGAAAGGACCGAGAACGAAGCTGTCATGTTAGATTGA

mRNA sequence

ATGGTGATCGAGAAAACAAGAAAACAAATGAAACCCATCAACAGGGCTGGGCAACACCAAGAAATCACCGAAGATCAAGTTAATGCGGGAACAGTTTGGCTGGAGAAATGTGATAAAAAATTTAGATTGAATACACAAATGGAAGGTCCCATAAACATCAACGAATCGGAAAGGACCGAGAACGAAGCTGTCATGTTAGATTGA

Coding sequence (CDS)

ATGGTGATCGAGAAAACAAGAAAACAAATGAAACCCATCAACAGGGCTGGGCAACACCAAGAAATCACCGAAGATCAAGTTAATGCGGGAACAGTTTGGCTGGAGAAATGTGATAAAAAATTTAGATTGAATACACAAATGGAAGGTCCCATAAACATCAACGAATCGGAAAGGACCGAGAACGAAGCTGTCATGTTAGATTGA

Protein sequence

MVIEKTRKQMKPINRAGQHQEITEDQVNAGTVWLEKCDKKFRLNTQMEGPININESERTENEAVMLD

Homology

[Close]

BLAST of PI0025924 vs. ExPASy TrEMBL
Match: A0A5D3CPG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009330 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.2e-22
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 10 MKPINRAGQHQEITEDQVNAGTVWLEKCDKKFRLNTQMEGPININESERTENEAVMLD 68
          MKPIN AGQHQEI EDQVNAGTVWLEKCD KFRLNTQMEGPININE ERTENEA+MLD
Sbjct: 1  MKPINGAGQHQEIDEDQVNAGTVWLEKCDLKFRLNTQMEGPININEPERTENEAIMLD 58

[Close]

BLAST of PI0025924 vs. ExPASy TrEMBL
Match: A0A0A0KIR4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524700 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.0e-21
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 10 MKPINRAGQHQEITEDQVNAG-TVWLEKCDKKFRLNTQMEGPININESERTENEAVMLD 68
          MKPINRAGQHQ ITEDQVNAG TVW+EKCD KFRLNTQMEGPININE+ERTENEA+MLD
Sbjct: 1  MKPINRAGQHQGITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD 59

[Close]

BLAST of PI0025924 vs. NCBI nr
Match: KAA0052515.1 (hypothetical protein E6C27_scaffold120G001150 [Cucumis melo var. makuwa] >TYK13310.1 hypothetical protein E5676_scaffold255G009330 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 10 MKPINRAGQHQEITEDQVNAGTVWLEKCDKKFRLNTQMEGPININESERTENEAVMLD 68
          MKPIN AGQHQEI EDQVNAGTVWLEKCD KFRLNTQMEGPININE ERTENEA+MLD
Sbjct: 1  MKPINGAGQHQEIDEDQVNAGTVWLEKCDLKFRLNTQMEGPININEPERTENEAIMLD 58

[Close]

BLAST of PI0025924 vs. NCBI nr
Match: KGN49433.1 (hypothetical protein Csa_004453 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 10 MKPINRAGQHQEITEDQVNAG-TVWLEKCDKKFRLNTQMEGPININESERTENEAVMLD 68
          MKPINRAGQHQ ITEDQVNAG TVW+EKCD KFRLNTQMEGPININE+ERTENEA+MLD
Sbjct: 1  MKPINRAGQHQGITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD 59

The following BLAST results are available for this feature:

BLAST of PI0025924 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025924 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CPG0	9.2e-22	91.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KIR4	6.0e-21	89.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524700 PE=4 SV=1	[more]

BLAST of PI0025924 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052515.1	1.9e-21	91.38	hypothetical protein E6C27_scaffold120G001150 [Cucumis melo var. makuwa] >TYK133...	[more]
KGN49433.1	1.2e-20	89.83	hypothetical protein Csa_004453 [Cucumis sativus]	[more]

BLAST of PI0025924 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025924.1	PI0025924.1	mRNA