PI0025854 (gene) Melon (PI 482460) v1

Overview


Name	PI0025854
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr12: 10087149 .. 10088488 (-)
RNA-Seq Expression	PI0025854
Synteny	PI0025854

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACACACGACGATATTGTGTCCTTACTTAACATGTTCATAACATCCCAACGTCAGTTGCTATTGACGTTGGAATTGTTATTGAATGACAACAAGAGGATAGCGCAAGTACCTTCGGACATGAGGCATAGGATTAGACAGTTGACTTACTTTCGCATGATCCATGAAAACGACCTCGTGTGTTGTCAAAGTACGCGAATAGGCAGACGATGCTTCACCATTTTATGCCACCTACTTCGGACTGTAGCTGGATTACAACCGACCGAAATGATCAATGTCGAAGAAATGGTCGCCATGTTTCTTCACGTACTGGCGCACGACGTGAAAAATCGTGTCATTCAACGTGAGTTCGTGCGGTCCGATGAGACTGTTTCACGTCATTTCAATCTGATATTGCTGGATGTTATACACCTCCATGACGAGCTTTTGGCAAAACCACAATCGGTGACGAGCACTTGCTTAGATGCACGGTGGAGGTGGTTCGAGGTACGGTTGTCATGGTCACAATCGACCACAATACCGCGTATTTGAACGAAATCTCATAGCGGATTGTGTATGCATTGCAGAATTGTCTAGGTGCACTGAATGGCACGTACATCAAGGTTAACGTGATGGCAACTAATCGACCAGGATACAGAACACGAAAGGGTGAAGTTGCAACAAACGTGCTCGGTGTATGTGATACGAAGAGAGATTTCGTGTTTGTGTTAGCTGGTTGGGAGGGTTCTACGACAGACTCGAGCATCCTTCGAGATGCCATTTCTAGACCGAACGAACTTAGGGTGCCAAAGGGTAAACACAATACCTCAGTCAATTACTGTTCACTCTAAACCTCATGAATATCTATAGTAAAGAGTGTCGTTTCTTTCAATAGGGTATTACTACCTATGTGACGCAGGGTACCCTAATGCAGAGGTTTTTTAGCTCCGTACCAAGGGCAACGATACCACCTGCAGGAGTGGCGCGGGGCGGATAATTCACCAACAACAGCGAAAGAGTTCTTTAACATGAAACATTCTTTCGCACGGAATGTCATTGAAAGAGCTTTCGGTCTGTTGAAGGGTCGATGGGAAATCCTTCGAGGAAAGTCCTACTATCCTGTCAAAGTTCAAACTCGCACGATACTCGCATGTTCTATACTGCATAATCTCATAAATCAGGAGATGACGAACACTAATATACCGGATGACGTTGATGAGGGTGACTCTACGTACGCCACCACTGGCAGTGAAGAAATTCACTATATAGAGACGTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAACACCCAATGA

mRNA sequence

ATGGACACACACGACGATATTGTGTCCTTACTTAACATGTTCATAACATCCCAACGTCAGTTGCTATTGACGTTGGAATTGTTATTGAATGACAACAAGAGGATAGCGCAAGTACCTTCGGACATGAGGCATAGGATTAGACAGTTGACTTACTTTCGCATGATCCATGAAAACGACCTCGTGTGTTGTCAAAGTACGCGAATAGGCAGACGATGCTTCACCATTTTATGCCACCTACTTCGGACTGTAGCTGGATTACAACCGACCGAAATGATCAATGTCGAAGAAATGGTCGCCATGTTTCTTCACGTACTGGCGCACGACGTGAAAAATCGTGTCATTCAACGTGAGTTCGTGCGGTCCGATGAGACTGTTTCACGTCATTTCAATCTGATATTGCTGGATGTTATACACCTCCATGACGAGCTTTTGGCAAAACCACAATCGGTGACGAGCACTTGCTTAGATGCACGGTGGAGGTGGTTCGAGGAGATGACGAACACTAATATACCGGATGACGTTGATGAGGGTGACTCTACGTACGCCACCACTGGCAGTGAAGAAATTCACTATATAGAGACGTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAACACCCAATGA

Coding sequence (CDS)

ATGGACACACACGACGATATTGTGTCCTTACTTAACATGTTCATAACATCCCAACGTCAGTTGCTATTGACGTTGGAATTGTTATTGAATGACAACAAGAGGATAGCGCAAGTACCTTCGGACATGAGGCATAGGATTAGACAGTTGACTTACTTTCGCATGATCCATGAAAACGACCTCGTGTGTTGTCAAAGTACGCGAATAGGCAGACGATGCTTCACCATTTTATGCCACCTACTTCGGACTGTAGCTGGATTACAACCGACCGAAATGATCAATGTCGAAGAAATGGTCGCCATGTTTCTTCACGTACTGGCGCACGACGTGAAAAATCGTGTCATTCAACGTGAGTTCGTGCGGTCCGATGAGACTGTTTCACGTCATTTCAATCTGATATTGCTGGATGTTATACACCTCCATGACGAGCTTTTGGCAAAACCACAATCGGTGACGAGCACTTGCTTAGATGCACGGTGGAGGTGGTTCGAGGAGATGACGAACACTAATATACCGGATGACGTTGATGAGGGTGACTCTACGTACGCCACCACTGGCAGTGAAGAAATTCACTATATAGAGACGTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAACACCCAATGA

Protein sequence

MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEEMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEKCSVIGSCVISNTQ

Homology

[Close]

BLAST of PI0025854 vs. ExPASy TrEMBL
Match: A0A5D3BZB1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00580 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 6.2e-67
Identity = 143/276 (51.81%), Postives = 174/276 (63.04%), Query Frame = 0


Query: 1   MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDL 60
           MD H ++ S++N FI SQ+QLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DL
Sbjct: 1   MDEH-ELASIVNAFIASQQQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDL 60

Query: 61  VCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVR 120
           VC QSTR+ RRCFTILCHLLRT+AGL  TE+++VEEMVAMFLH+LAHDVKNRVIQREF+R
Sbjct: 61  VCRQSTRMDRRCFTILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMR 120

Query: 121 SDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEEMTN--------TNIP- 180
           S ET+SRHFN++LL VI LH+ELL KPQ V + C D RWRWFE   +         N+P 
Sbjct: 121 SSETISRHFNMVLLAVIRLHEELLKKPQPVPNDCTDQRWRWFENCLDALNGTYIKVNVPA 180

Query: 181 -----------------------------------------------------------D 209
                                                                      D
Sbjct: 181 SDRSRYRTRKGEMATNVRGMCDTKGDFVYVLAGWEGSAADSRILRDAISRPNGLKVSKED 240

[Close]

BLAST of PI0025854 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 3.7e-59
Identity = 123/193 (63.73%), Postives = 144/193 (74.61%), Query Frame = 0


Query: 1   MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDL 60
           MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DL
Sbjct: 1   MDEH-ELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDL 60

Query: 61  VCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVR 120
           VC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAMFLH+LAHDVKNRVIQREF+R
Sbjct: 61  VCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMR 120

Query: 121 SDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDE 180
           S ET+SRHFN++LL VI LHDELL KPQ V + C D RWRWFE     +  T I  +V  
Sbjct: 121 SGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPA 180

Query: 181 GDSTYATTGSEEI 190
            D     T   E+
Sbjct: 181 SDRARYRTRKGEV 192

[Close]

BLAST of PI0025854 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.6e-08
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 164 EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK 209
           EMTN +I D++DE DST+ATT +++IHYIETS+ WSQWRD LAE+
Sbjct: 334 EMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEE 378

HSP 2 Score: 238.0 bits (606), Expect = 3.7e-59
Identity = 123/193 (63.73%), Postives = 144/193 (74.61%), Query Frame = 0


Query: 1   MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDL 60
           MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DL
Sbjct: 1   MDEH-ELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDL 60

Query: 61  VCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVR 120
           VC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAMFLH+LAHDVKNRVIQREF+R
Sbjct: 61  VCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMR 120

Query: 121 SDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDE 180
           S ET+SRHFN++LL VI LHDELL KPQ V + C D RWRWFE     +  T I  +V  
Sbjct: 121 SGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPA 180

Query: 181 GDSTYATTGSEEI 190
            D     T   E+
Sbjct: 181 SDRARYRTRKGEV 192

[Close]

BLAST of PI0025854 vs. ExPASy TrEMBL
Match: A0A5A7VHB0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00240 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 4.8e-59
Identity = 123/193 (63.73%), Postives = 143/193 (74.09%), Query Frame = 0


Query: 1   MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDL 60
           MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIHE+DL
Sbjct: 1   MDEH-ELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHESDL 60

Query: 61  VCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVR 120
           VC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAMFLH+LAHDVKNRVIQREF+R
Sbjct: 61  VCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMR 120

Query: 121 SDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDE 180
           S ET+ RHFN+I L VI LHDELL KPQ V + C D RWRWFE     +  T I  +V  
Sbjct: 121 SGETIFRHFNMIFLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPA 180

Query: 181 GDSTYATTGSEEI 190
            D     T   E+
Sbjct: 181 SDQARYRTRKGEV 192

[Close]

BLAST of PI0025854 vs. ExPASy TrEMBL
Match: A0A5A7VHB0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00240 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-08
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 164 EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK 209
           EMTN +I D++DE DST+ATT +++IHYIETS+ WSQWRD+LAE+
Sbjct: 334 EMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEE 378

HSP 2 Score: 236.5 bits (602), Expect = 1.1e-58
Identity = 122/193 (63.21%), Postives = 144/193 (74.61%), Query Frame = 0


Query: 1   MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDL 60
           MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DL
Sbjct: 1   MDEH-ELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDL 60

Query: 61  VCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVR 120
           VC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAMFLH+LAHDVKNRVIQREF+R
Sbjct: 61  VCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMR 120

Query: 121 SDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDE 180
           S ET+SRHFN++LL VI LH+ELL KPQ V + C D RWRWFE     +  T I  +V  
Sbjct: 121 SGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPA 180

Query: 181 GDSTYATTGSEEI 190
            D     T   E+
Sbjct: 181 SDRARYRTRKGEV 192

[Close]

BLAST of PI0025854 vs. NCBI nr
Match: KAA0047074.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK05083.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 263.8 bits (673), Expect = 1.3e-66
Identity = 143/276 (51.81%), Postives = 174/276 (63.04%), Query Frame = 0


Query: 1   MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDL 60
           MD H ++ S++N FI SQ+QLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DL
Sbjct: 1   MDEH-ELASIVNAFIASQQQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDL 60

Query: 61  VCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVR 120
           VC QSTR+ RRCFTILCHLLRT+AGL  TE+++VEEMVAMFLH+LAHDVKNRVIQREF+R
Sbjct: 61  VCRQSTRMDRRCFTILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMR 120

Query: 121 SDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEEMTN--------TNIP- 180
           S ET+SRHFN++LL VI LH+ELL KPQ V + C D RWRWFE   +         N+P 
Sbjct: 121 SSETISRHFNMVLLAVIRLHEELLKKPQPVPNDCTDQRWRWFENCLDALNGTYIKVNVPA 180

Query: 181 -----------------------------------------------------------D 209
                                                                      D
Sbjct: 181 SDRSRYRTRKGEMATNVRGMCDTKGDFVYVLAGWEGSAADSRILRDAISRPNGLKVSKED 240

[Close]

BLAST of PI0025854 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.0 bits (606), Expect = 7.6e-59
Identity = 123/193 (63.73%), Postives = 144/193 (74.61%), Query Frame = 0


Query: 1   MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDL 60
           MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DL
Sbjct: 1   MDEH-ELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDL 60

Query: 61  VCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVR 120
           VC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAMFLH+LAHDVKNRVIQREF+R
Sbjct: 61  VCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMR 120

Query: 121 SDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDE 180
           S ET+SRHFN++LL VI LHDELL KPQ V + C D RWRWFE     +  T I  +V  
Sbjct: 121 SGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPA 180

Query: 181 GDSTYATTGSEEI 190
            D     T   E+
Sbjct: 181 SDRARYRTRKGEV 192

[Close]

BLAST of PI0025854 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-07
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 164 EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK 209
           EMTN +I D++DE DST+ATT +++IHYIETS+ WSQWRD LAE+
Sbjct: 334 EMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEE 378

HSP 2 Score: 238.0 bits (606), Expect = 7.6e-59
Identity = 123/193 (63.73%), Postives = 144/193 (74.61%), Query Frame = 0


Query: 1   MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDL 60
           MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DL
Sbjct: 1   MDEH-ELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDL 60

Query: 61  VCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVR 120
           VC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAMFLH+LAHDVKNRVIQREF+R
Sbjct: 61  VCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMR 120

Query: 121 SDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDE 180
           S ET+SRHFN++LL VI LHDELL KPQ V + C D RWRWFE     +  T I  +V  
Sbjct: 121 SGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPA 180

Query: 181 GDSTYATTGSEEI 190
            D     T   E+
Sbjct: 181 SDRARYRTRKGEV 192

[Close]

BLAST of PI0025854 vs. NCBI nr
Match: KAA0065736.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 237.7 bits (605), Expect = 9.9e-59
Identity = 123/193 (63.73%), Postives = 143/193 (74.09%), Query Frame = 0


Query: 1   MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDL 60
           MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIHE+DL
Sbjct: 1   MDEH-ELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHESDL 60

Query: 61  VCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVR 120
           VC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAMFLH+LAHDVKNRVIQREF+R
Sbjct: 61  VCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMR 120

Query: 121 SDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDE 180
           S ET+ RHFN+I L VI LHDELL KPQ V + C D RWRWFE     +  T I  +V  
Sbjct: 121 SGETIFRHFNMIFLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPA 180

Query: 181 GDSTYATTGSEEI 190
            D     T   E+
Sbjct: 181 SDQARYRTRKGEV 192

[Close]

BLAST of PI0025854 vs. NCBI nr
Match: KAA0065736.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 7.9e-08
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 164 EMTNTNIPDDVDEGDSTYATTGSEEIHYIETSSAWSQWRDELAEK 209
           EMTN +I D++DE DST+ATT +++IHYIETS+ WSQWRD+LAE+
Sbjct: 334 EMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEE 378

HSP 2 Score: 236.5 bits (602), Expect = 2.2e-58
Identity = 122/193 (63.21%), Postives = 144/193 (74.61%), Query Frame = 0


Query: 1   MDTHDDIVSLLNMFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLTYFRMIHENDL 60
           MD H ++ S++N FI SQRQLLL LELL ND KRI  +P + RHRIRQL YFRMIH +DL
Sbjct: 1   MDEH-ELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDL 60

Query: 61  VCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVR 120
           VC QSTR+ RRCF ILCHLLRT+AGL  TE+++VEEMVAMFLH+LAHDVKNRVIQREF+R
Sbjct: 61  VCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMR 120

Query: 121 SDETVSRHFNLILLDVIHLHDELLAKPQSVTSTCLDARWRWFEE----MTNTNIPDDVDE 180
           S ET+SRHFN++LL VI LH+ELL KPQ V + C D RWRWFE     +  T I  +V  
Sbjct: 121 SGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPA 180

Query: 181 GDSTYATTGSEEI 190
            D     T   E+
Sbjct: 181 SDRARYRTRKGEV 192

[Close]

BLAST of PI0025854 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-10
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 52  FRMIHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKN 111
           +R + ++   C Q  R+   CFT LC++L+T   LQPT  I++EE VAMFL +  H+   
Sbjct: 56  WRRLQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVY 115

Query: 112 RVIQREFVRSDETVSRHFNLIL 134
           R +   F R+ ETV R F  +L
Sbjct: 116 RDVGLRFGRNQETVQRKFREVL 137

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BLAST of PI0025854 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-09
Identity = 33/92 (35.87%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 62  CCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVIQREFVRS 121
           C ++ R+ +  F  LC LL+T   L+ T  I +E  +A+FL ++ H+++ R +Q  F  S
Sbjct: 42  CFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYS 101

Query: 122 DETVSRHFNLILLDVIHLHDELLAKPQSVTST 154
            ET+SRHFN +L  VI +  +   +P S + T
Sbjct: 102 GETISRHFNNVLNAVIAISKDFF-QPNSNSDT 132

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BLAST of PI0025854 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 1.0e-05
Identity = 31/96 (32.29%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 55  IHENDLVCCQSTRIGRRCFTILCHLLRTVAGLQPTEMINVEEMVAMFLHVLAHDVKNRVI 114
           I+ N++ C    R+    FT LC +L    GLQ +  I+++E VA+FL + A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 115 QREFVRSDETVSRHFNLILLDVIHLHDELLAKPQSV 151
              F  + ET+ R F+ +L  +  L  E + +P+ V
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYI-RPRKV 111

The following BLAST results are available for this feature:

BLAST of PI0025854 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025854 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZB1	6.2e-67	51.81	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TXW1	3.7e-59	63.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TXW1	6.6e-08	66.67	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VHB0	4.8e-59	63.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VHB0	3.8e-08	66.67	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

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BLAST of PI0025854 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047074.1	1.3e-66	51.81	retrotransposon protein [Cucumis melo var. makuwa] >TYK05083.1 retrotransposon p...	[more]
KAA0046727.1	7.6e-59	63.73	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0046727.1	1.4e-07	66.67	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0065736.1	9.9e-59	63.73	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065736.1	7.9e-08	66.67	retrotransposon protein [Cucumis melo var. makuwa]	[more]

Pages

BLAST of PI0025854 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43722.1	1.8e-10	40.24	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G41980.1	1.2e-09	35.87	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28730.1	1.0e-05	32.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 30..164
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 30..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025854.1	PI0025854.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding