PI0025825 (gene) Melon (PI 482460) v1

Overview


Name	PI0025825
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr04: 28361950 .. 28362391 (+)
RNA-Seq Expression	PI0025825
Synteny	PI0025825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGACATCCTAGGTTCGCCAACAATAGACCGTCGGATAAAAAACATGAAGAAAACGTTCCAGACCATCGTAGAAATACGCAGGTCGTTGTGTAGTAGATTCGGTTGGAACGATGAAGTGAAATGCATCATCGCTGAGAAGGAGTTGTTTGACAATTGGGTGAAGGTAAATTATTCATTCTACCAATCGTTATTCGTTTATAATAGAAAAAAACTGACAATTTATTTAAACACTTCAACAGAGTCCTCTTGCTGCCAATGCCCTCTTAAACAAGCCTTTTCCCCATTACGACGACCTGTGCTACATATTTGGAAAAGATCGTGCGATGGGAGCGCACTCGGAGACATTCGCCGATGTGGGGTCGAATGTGTCTGGAGGGTACGAGGGATTTCCTACTGACAGTGGAAACGATCAGGAGATCCCTATGATGTACAGTTAG

mRNA sequence

ATGTCAGACATCCTAGGTTCGCCAACAATAGACCGTCGGATAAAAAACATGAAGAAAACGTTCCAGACCATCGTAGAAATACGCAGGTCGTTGTGTAGTAGATTCGGTTGGAACGATGAAGTGAAATGCATCATCGCTGAGAAGGAGTTGTTTGACAATTGGGTGAAGAGTCCTCTTGCTGCCAATGCCCTCTTAAACAAGCCTTTTCCCCATTACGACGACCTGTGCTACATATTTGGAAAAGATCGTGCGATGGGAGCGCACTCGGAGACATTCGCCGATGTGGGGTCGAATGTGTCTGGAGGGTACGAGGGATTTCCTACTGACAGTGGAAACGATCAGGAGATCCCTATGATGTACAGTTAG

Coding sequence (CDS)

ATGTCAGACATCCTAGGTTCGCCAACAATAGACCGTCGGATAAAAAACATGAAGAAAACGTTCCAGACCATCGTAGAAATACGCAGGTCGTTGTGTAGTAGATTCGGTTGGAACGATGAAGTGAAATGCATCATCGCTGAGAAGGAGTTGTTTGACAATTGGGTGAAGAGTCCTCTTGCTGCCAATGCCCTCTTAAACAAGCCTTTTCCCCATTACGACGACCTGTGCTACATATTTGGAAAAGATCGTGCGATGGGAGCGCACTCGGAGACATTCGCCGATGTGGGGTCGAATGTGTCTGGAGGGTACGAGGGATTTCCTACTGACAGTGGAAACGATCAGGAGATCCCTATGATGTACAGTTAG

Protein sequence

MSDILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGYEGFPTDSGNDQEIPMMYS

Homology

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BLAST of PI0025825 vs. ExPASy TrEMBL
Match: A0A5A7TYW0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold109G00440 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.1e-33
Identity = 71/118 (60.17%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 4   ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANA 63
           +  +  ID RIK +K+TFQ I E+R   CS FGWNDE KCIIAEKELFDNWV+S  AA  
Sbjct: 11  VRATTVIDCRIKTLKRTFQAIAEMRGPTCSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 70

Query: 64  LLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGYEGFPTDSGNDQEIPMMYS 122
           LLNKPFP+YD+L Y+F +DRAMG  +ETF DVGSN  GGY+ F    GN +E P +Y+
Sbjct: 71  LLNKPFPYYDELTYVFSRDRAMGRFAETFTDVGSNEPGGYDRFDMGDGN-EEFPPVYN 127

[Close]

BLAST of PI0025825 vs. ExPASy TrEMBL
Match: A0A5A7VKT2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G001150 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.1e-33
Identity = 72/116 (62.07%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 4   ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANA 63
           +  +  ID RIK +K+TFQ I E+R   CS FGWNDEVKCIIAEKELFDNWV+S  AA  
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKG 120

Query: 64  LLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSN-VSGGYEGFPTDSGNDQEIPM 119
           LLNKPFP+YD+L Y+FG+DRA G  +ETFADVGSN + GGY+ F    GN+   PM
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNELGGGYDRFDIGDGNEDFPPM 176

[Close]

BLAST of PI0025825 vs. ExPASy TrEMBL
Match: A0A5D3DJA6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00700 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.2e-33
Identity = 72/118 (61.02%), Postives = 87/118 (73.73%), Query Frame = 0


Query: 4   ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANA 63
           +  +  ID RIK +K+TFQ I E+R   CS FGWNDE KCIIAEKELFDNWV+S LAA  
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIFEMRGPTCSGFGWNDEEKCIIAEKELFDNWVRSHLAAKG 120

Query: 64  LLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSN-VSGGYEGFPTDSGNDQEIPMMY 121
           LLNKPFP+YD+L Y+FG+DRA G  +ETFADVGSN   GGY+ F    GN ++ P +Y
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGN-EDFPPVY 177

[Close]

BLAST of PI0025825 vs. ExPASy TrEMBL
Match: A0A5A7UWV7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00660 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.2e-33
Identity = 72/112 (64.29%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 10  IDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPF 69
           ID RIK  K+TF  IVE+    CS FGWNDE KCII EKELFDNWV+S  AA  LLNKPF
Sbjct: 75  IDCRIKTPKRTFHAIVEMWGPACSGFGWNDEEKCIILEKELFDNWVRSHPAAKTLLNKPF 134

Query: 70  PHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGYEGFPTDSGNDQEIPMMYS 122
           P+YD+L Y+F +DRAMG  ++TFADVGSN  GGYEGF    GN +E P +YS
Sbjct: 135 PYYDELTYVFDRDRAMGPFAKTFADVGSNEPGGYEGFDMTDGN-EEFPPVYS 185

[Close]

BLAST of PI0025825 vs. ExPASy TrEMBL
Match: A0A5A7VES2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002250 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.2e-33
Identity = 72/119 (60.50%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 4   ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANA 63
           +  +  ID RIK +K+TFQ I E+R   CS FGWNDE KCIIAEKELFDNWV+S  AA  
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 120

Query: 64  LLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSN-VSGGYEGFPTDSGNDQEIPMMYS 122
           LLNKPFP+YD+L Y+FG+DRA G  +ETFADVGSN   GGY+ F    GN ++ P +YS
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGN-EDFPPVYS 178

[Close]

BLAST of PI0025825 vs. NCBI nr
Match: XP_031742657.1 (uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742659.1 uncharacterized protein LOC116404426 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-35
Identity = 74/119 (62.18%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 3   DILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAAN 62
           ++  +  ID RIK +K+++Q I E+R   CS FGWND+ KCIIAEKE FDNWV+S  AA 
Sbjct: 60  NVHATTVIDYRIKTLKRSYQAIAEMRGPSCSGFGWNDDAKCIIAEKEFFDNWVRSHPAAK 119

Query: 63  ALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGYEGFPTDSGNDQEIPMMYS 122
            LLNKPFP+YD   Y+FGKDRAMGAH ETFADVGSNV  G+E FP    ND EIP M S
Sbjct: 120 GLLNKPFPYYDKFAYVFGKDRAMGAHVETFADVGSNVPPGFEEFPPVDQNDMEIPSMSS 178

[Close]

BLAST of PI0025825 vs. NCBI nr
Match: XP_031743896.1 (uncharacterized protein LOC116404722 [Cucumis sativus] >XP_031743897.1 uncharacterized protein LOC116404722 [Cucumis sativus] >XP_031743898.1 uncharacterized protein LOC116404722 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 3.2e-35
Identity = 73/112 (65.18%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 10  IDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPF 69
           ID  IK +K+++Q I E+    CS FGWND+ KCI+AEKELFDNWV+S LAA  LLNKPF
Sbjct: 107 IDCSIKTLKRSYQAIAEMHDPSCSGFGWNDDAKCIVAEKELFDNWVRSHLAAKGLLNKPF 166

Query: 70  PHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGYEGFPTDSGNDQEIPMMYS 122
           P+YD L YIFGKDRA GAH+ETFADVGSNV  G+E FP    ND +IP M+S
Sbjct: 167 PYYDKLAYIFGKDRATGAHAETFADVGSNVPPGFEEFPHVDLNDMKIPSMFS 218

[Close]

BLAST of PI0025825 vs. NCBI nr
Match: XP_031744343.1 (uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharacterized protein LOC116404989 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-34
Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = 0


Query: 3   DILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAAN 62
           ++  +  ID RIK +K+++Q I E+R   C  FGWND+VKCI+AEKELFDNWV+S  AA 
Sbjct: 10  NVHATTVIDCRIKTLKRSYQEIAEMRGPSCGGFGWNDDVKCIVAEKELFDNWVRSHPAAK 69

Query: 63  ALLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGYEGFPTDSGNDQEIPMMYS 122
            LLNK FP+YD+L Y+FGKDRAMG H+ETFADVGSNV  G+E FP    ND E P M S
Sbjct: 70  GLLNKLFPYYDELAYVFGKDRAMGTHAETFADVGSNVPPGFEEFPPVDLNDMEFPSMSS 128

[Close]

BLAST of PI0025825 vs. NCBI nr
Match: KAA0047166.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01162.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-33
Identity = 71/118 (60.17%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 4   ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANA 63
           +  +  ID RIK +K+TFQ I E+R   CS FGWNDE KCIIAEKELFDNWV+S  AA  
Sbjct: 11  VRATTVIDCRIKTLKRTFQAIAEMRGPTCSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 70

Query: 64  LLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSNVSGGYEGFPTDSGNDQEIPMMYS 122
           LLNKPFP+YD+L Y+F +DRAMG  +ETF DVGSN  GGY+ F    GN +E P +Y+
Sbjct: 71  LLNKPFPYYDELTYVFSRDRAMGRFAETFTDVGSNEPGGYDRFDMGDGN-EEFPPVYN 127

[Close]

BLAST of PI0025825 vs. NCBI nr
Match: KAA0065929.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-33
Identity = 72/116 (62.07%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 4   ILGSPTIDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANA 63
           +  +  ID RIK +K+TFQ I E+R   CS FGWNDEVKCIIAEKELFDNWV+S  AA  
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKG 120

Query: 64  LLNKPFPHYDDLCYIFGKDRAMGAHSETFADVGSN-VSGGYEGFPTDSGNDQEIPM 119
           LLNKPFP+YD+L Y+FG+DRA G  +ETFADVGSN + GGY+ F    GN+   PM
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNELGGGYDRFDIGDGNEDFPPM 176

[Close]

BLAST of PI0025825 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 3.3e-06
Identity = 20/71 (28.17%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 10  IDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPF 69
           +  R K++++ F  I  I RS    F W++E + + A+  ++ +++K+   A   + +P 
Sbjct: 237 LKNRYKSLRRQFNAIKSILRS--DGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPI 296

Query: 70  PHYDDLCYIFG 81
           P+Y DLC + G
Sbjct: 297 PYYKDLCVLCG 305

[Close]

BLAST of PI0025825 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 48.9 bits (115), Expect = 3.3e-06
Identity = 20/71 (28.17%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 10  IDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPF 69
           +  R K++++ F  I  I RS    F W++E + + A+  ++ +++K+   A   + +P 
Sbjct: 237 LKNRYKSLRRQFNAIKSILRS--DGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPI 296

Query: 70  PHYDDLCYIFG 81
           P+Y DLC + G
Sbjct: 297 PYYKDLCVLCG 305

[Close]

BLAST of PI0025825 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.8e-04
Identity = 24/105 (22.86%), Postives = 51/105 (48.57%), Query Frame = 0


Query: 10  IDRRIKNMKKTFQTIVEIRRSLCSRFGWNDEVKCIIAEKELFDNWVKSPLAANALLNKPF 69
           +  R K++++ +  I  +     + F W+     +IA+ ++++ ++++   A +   K  
Sbjct: 378 LKNRYKHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTI 437

Query: 70  PHYDDLCYIFGKDRAMGAHS--------ETFADVGSNVSGGYEGF 107
           P Y +LC+IFGK+ + G ++             V  N SG  +GF
Sbjct: 438 PSYPNLCFIFGKETSDGRYTRLAQAFDPSPAETVRMNESGSTDGF 480

The following BLAST results are available for this feature:

BLAST of PI0025825 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TYW0	1.1e-33	60.17	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VKT2	1.1e-33	62.07	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DJA6	4.2e-33	61.02	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UWV7	7.2e-33	64.29	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VES2	7.2e-33	60.50	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0025825 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742657.1	1.1e-35	62.18	uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharact...	[more]
XP_031743896.1	3.2e-35	65.18	uncharacterized protein LOC116404722 [Cucumis sativus] >XP_031743897.1 uncharact...	[more]
XP_031744343.1	1.2e-34	60.50	uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharact...	[more]
KAA0047166.1	2.3e-33	60.17	retrotransposon protein [Cucumis melo var. makuwa] >TYK01162.1 retrotransposon p...	[more]
KAA0065929.1	2.3e-33	62.07	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0025825 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02210.1	3.3e-06	28.17	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	3.3e-06	28.17	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.2	1.8e-04	22.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 2..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025825.1	PI0025825.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane