PI0025777 (gene) Melon (PI 482460) v1

Overview
NamePI0025777
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionGag/pol protein
Locationchr07: 15209630 .. 15210199 (-)
RNA-Seq ExpressionPI0025777
SyntenyPI0025777
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGAGGATATGAGCGTCTACTTCAACGTGGATGCCATTAACAAACTGTACGACTCCATGAACGTGGAAACGCCATGGCATGCCTTGGTGACTAGACCTTTAAAGAGGCAGGCTAGGAAAGCGTTAGAGACGATTGCGTGGTCTTGGGCGGAATGGAAAATCACTCAAACTGGAAAATATCAACTGTACCCATACCAGCTAACCACTAAGACAAACATGTGGAACTTCTTCATTAAAAAGAAAATCATGCCAACGTGTCACGACAGCACTATGTCGCTAAAGTACGTGATGATGATCTATTGCATCATGAAGCAGTTGGCAGTTGATATTGGCACAATCATGAGCGATTCTCTTCTTGGATGGATGGAAGCTCCCAAGGGCGCCTTACCCTTCCCATCCATCATTGAGGCTAGGTCTTCAGGTGGTACCATGTTTGGCAGCCTTACCACATACCCCAATCCCTGGAGGTTTCTACAATTAGGCAGGGTCAATCGTATTATCACTCTTCACCAAACACAAGGAAAAGGGTCGACGCCTGAATACTCTAGGCAAAAAAGAAGACACTAG

mRNA sequence

ATGGTCGAGGATATGAGCGTCTACTTCAACGTGGATGCCATTAACAAACTGTACGACTCCATGAACGTGGAAACGCCATGGCATGCCTTGGTGACTAGACCTTTAAAGAGGCAGGCTAGGAAAGCGTTAGAGACGATTGCGTGGTCTTGGGCGGAATGGAAAATCACTCAAACTGGAAAATATCAACTGTACCCATACCAGCTAACCACTAAGACAAACATGTGGAACTTCTTCATTAAAAAGAAAATCATGCCAACGTGTCACGACAGCACTATGTCGCTAAAGTACGTGATGATGATCTATTGCATCATGAAGCAGTTGGCAGTTGATATTGGCACAATCATGAGCGATTCTCTTCTTGGATGGATGGAAGCTCCCAAGGGCGCCTTACCCTTCCCATCCATCATTGAGGCTAGGTCTTCAGGTGGTACCATGTTTGGCAGCCTTACCACATACCCCAATCCCTGGAGGTTTCTACAATTAGGCAGGGTCAATCGTATTATCACTCTTCACCAAACACAAGGAAAAGGGTCGACGCCTGAATACTCTAGGCAAAAAAGAAGACACTAG

Coding sequence (CDS)

ATGGTCGAGGATATGAGCGTCTACTTCAACGTGGATGCCATTAACAAACTGTACGACTCCATGAACGTGGAAACGCCATGGCATGCCTTGGTGACTAGACCTTTAAAGAGGCAGGCTAGGAAAGCGTTAGAGACGATTGCGTGGTCTTGGGCGGAATGGAAAATCACTCAAACTGGAAAATATCAACTGTACCCATACCAGCTAACCACTAAGACAAACATGTGGAACTTCTTCATTAAAAAGAAAATCATGCCAACGTGTCACGACAGCACTATGTCGCTAAAGTACGTGATGATGATCTATTGCATCATGAAGCAGTTGGCAGTTGATATTGGCACAATCATGAGCGATTCTCTTCTTGGATGGATGGAAGCTCCCAAGGGCGCCTTACCCTTCCCATCCATCATTGAGGCTAGGTCTTCAGGTGGTACCATGTTTGGCAGCCTTACCACATACCCCAATCCCTGGAGGTTTCTACAATTAGGCAGGGTCAATCGTATTATCACTCTTCACCAAACACAAGGAAAAGGGTCGACGCCTGAATACTCTAGGCAAAAAAGAAGACACTAG

Protein sequence

MVEDMSVYFNVDAINKLYDSMNVETPWHALVTRPLKRQARKALETIAWSWAEWKITQTGKYQLYPYQLTTKTNMWNFFIKKKIMPTCHDSTMSLKYVMMIYCIMKQLAVDIGTIMSDSLLGWMEAPKGALPFPSIIEARSSGGTMFGSLTTYPNPWRFLQLGRVNRIITLHQTQGKGSTPEYSRQKRRH
Homology
[Close]
BLAST of PI0025777 vs. ExPASy TrEMBL
Match: A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.9e-25
Identity = 63/138 (45.65%), Postives = 94/138 (68.12%), Query Frame = 0 

Query: 2   VEDMSVYFNVDAINKLYDSMN-VETPWHALVTRPLKRQARKALETIAWSWAEWKITQTG- 61
           +ED   YFNV+ IN+LY+S N  E     +VT+  K  A++AL+ +AW     ++     
Sbjct: 25  IEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKGLAKEALKVVAWPGIMSEVKPMKL 84

Query: 62  KYQLYPYQLTTKTNMWNFFIKKKIMPTCHDSTMSLKYVMMIYCIMKQLAVDIGTIMSDSL 121
           +YQLYP+ LTTK N+W FF K KI PTC+DST+S+ Y +++YCIM + A+++  I+  ++
Sbjct: 85  RYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDYTVILYCIMIKKAINLDEIIKAAI 144

Query: 122 LGWMEAPKGALPFPSIIE 138
           L WME PK A+PFPS++E
Sbjct: 145 LTWMEIPKEAMPFPSLME 161

[Close]
BLAST of PI0025777 vs. ExPASy TrEMBL
Match: A0A5D3D7L3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00290 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-21
Identity = 55/137 (40.15%), Postives = 85/137 (62.04%), Query Frame = 0 

Query: 1   MVEDMSVYFNVDAINKLYDSMNVETPWHALVTRPLKRQARKALETIAWSWAEWKITQTGK 60
           MVE   V F  DAIN+L+  +  +   HA+   P +R    AL+ +AW   +W I  TGK
Sbjct: 1   MVEGKKVDFGPDAINQLF-GLEAKEIEHAIFKNPQERDLEDALKRVAWPRTKWDIMPTGK 60

Query: 61  YQLYPYQLTTKTNMWNFFIKKKIMPTCHDSTMSLKYVMMIYCIMKQLAVDIGTIMSDSLL 120
           YQL+   L T+  +W  F+K  I PT HDST+S++++M++YCIM+ L V+I  I+S+ ++
Sbjct: 61  YQLFLQNLNTEAIIWLVFVKNDIRPTRHDSTISMEHIMLVYCIMEHLLVNIVEIISEHII 120

Query: 121 GWMEAPKGALPFPSIIE 138
            W++ P+   PF  +IE
Sbjct: 121 AWVKHPRRTRPFSHLIE 136

[Close]
BLAST of PI0025777 vs. ExPASy TrEMBL
Match: A0A5A7U806 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.4e-21
Identity = 56/139 (40.29%), Postives = 85/139 (61.15%), Query Frame = 0 

Query: 1    MVEDMSVYFNVDAINKLYDSMN--VETPWHALVTRPLKRQARKALETIAWSWAEWKITQT 60
            +VED  V F  + IN+LYD  N     P   L+    +  A+K ++ I W  A+   T T
Sbjct: 1226 IVEDEKVPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTPT 1285

Query: 61   GKYQLYPYQLTTKTNMWNFFIKKKIMPTCHDSTMSLKYVMMIYCIMKQLAVDIGTIMSDS 120
             + QL+P+QLT + N+W FFIKKKI PT HDST+  +Y +++YCI  +   ++G +M+++
Sbjct: 1286 RRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNEA 1345

Query: 121  LLGWMEAPKGALPFPSIIE 138
             L WM  PK A PFP+ ++
Sbjct: 1346 FLSWMRNPKNAKPFPTTVK 1364

[Close]
BLAST of PI0025777 vs. ExPASy TrEMBL
Match: A0A5D3CVL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00870 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.4e-21
Identity = 56/139 (40.29%), Postives = 85/139 (61.15%), Query Frame = 0 

Query: 1   MVEDMSVYFNVDAINKLYDSMN--VETPWHALVTRPLKRQARKALETIAWSWAEWKITQT 60
           +VED  V F  + IN+LYD  N     P   L+    +  A+K ++ I W  A+   T T
Sbjct: 65  IVEDEKVPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTPT 124

Query: 61  GKYQLYPYQLTTKTNMWNFFIKKKIMPTCHDSTMSLKYVMMIYCIMKQLAVDIGTIMSDS 120
            + QL+P+QLT + N+W FFIKKKI PT HDST+  +Y +++YCI  +   ++G +M+++
Sbjct: 125 RRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNEA 184

Query: 121 LLGWMEAPKGALPFPSIIE 138
            L WM  PK A PFP+ ++
Sbjct: 185 FLSWMRNPKNAKPFPTTVK 203

[Close]
BLAST of PI0025777 vs. ExPASy TrEMBL
Match: A0A5D3DES7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00570 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.8e-21
Identity = 55/133 (41.35%), Postives = 84/133 (63.16%), Query Frame = 0 

Query: 1   MVEDMSVYFNVDAINKLYDSMN--VETPWHALVTRPLKRQARKALETIAWSWAEWKITQT 60
           +VE   V F ++ IN+LY  +N     P  +L+  P K  +R  ++ IAW  A W  T T
Sbjct: 19  IVERKKVSFTMEEINELYGLLNDLDSYPSQSLIAEPTKGDSRMIIQLIAWLGAGWTRTTT 78

Query: 61  GKYQLYPYQLTTKTNMWNFFIKKKIMPTCHDSTMSLKYVMMIYCIMKQLAVDIGTIMSDS 120
              QLYP+QLTT+ N+W  FIKKKI+P C+DST+ ++Y++++YC M +   ++G +M+++
Sbjct: 79  RSLQLYPHQLTTEANVWLLFIKKKIIPMCYDSTVPIEYMLLLYCKMAKQPFNLGYMMNEA 138

Query: 121 LLGWMEAPKGALP 132
            LG M   KGA P
Sbjct: 139 FLGLMRNSKGAKP 151

[Close]
BLAST of PI0025777 vs. NCBI nr
Match: KAA0062900.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 8.0e-25
Identity = 63/138 (45.65%), Postives = 94/138 (68.12%), Query Frame = 0 

Query: 2   VEDMSVYFNVDAINKLYDSMN-VETPWHALVTRPLKRQARKALETIAWSWAEWKITQTG- 61
           +ED   YFNV+ IN+LY+S N  E     +VT+  K  A++AL+ +AW     ++     
Sbjct: 25  IEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKGLAKEALKVVAWPGIMSEVKPMKL 84

Query: 62  KYQLYPYQLTTKTNMWNFFIKKKIMPTCHDSTMSLKYVMMIYCIMKQLAVDIGTIMSDSL 121
           +YQLYP+ LTTK N+W FF K KI PTC+DST+S+ Y +++YCIM + A+++  I+  ++
Sbjct: 85  RYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDYTVILYCIMIKKAINLDEIIKAAI 144

Query: 122 LGWMEAPKGALPFPSIIE 138
           L WME PK A+PFPS++E
Sbjct: 145 LTWMEIPKEAMPFPSLME 161

[Close]
BLAST of PI0025777 vs. NCBI nr
Match: KAA0057652.1 (hypothetical protein E6C27_scaffold43054G00260 [Cucumis melo var. makuwa] >TYK19535.1 hypothetical protein E5676_scaffold416G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-21
Identity = 55/137 (40.15%), Postives = 85/137 (62.04%), Query Frame = 0 

Query: 1   MVEDMSVYFNVDAINKLYDSMNVETPWHALVTRPLKRQARKALETIAWSWAEWKITQTGK 60
           MVE   V F  DAIN+L+  +  +   HA+   P +R    AL+ +AW   +W I  TGK
Sbjct: 1   MVEGKKVDFGPDAINQLF-GLEAKEIEHAIFKNPQERDLEDALKRVAWPRTKWDIMPTGK 60

Query: 61  YQLYPYQLTTKTNMWNFFIKKKIMPTCHDSTMSLKYVMMIYCIMKQLAVDIGTIMSDSLL 120
           YQL+   L T+  +W  F+K  I PT HDST+S++++M++YCIM+ L V+I  I+S+ ++
Sbjct: 61  YQLFLQNLNTEAIIWLVFVKNDIRPTRHDSTISMEHIMLVYCIMEHLLVNIVEIISEHII 120

Query: 121 GWMEAPKGALPFPSIIE 138
            W++ P+   PF  +IE
Sbjct: 121 AWVKHPRRTRPFSHLIE 136

[Close]
BLAST of PI0025777 vs. NCBI nr
Match: KAA0049609.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 7.0e-21
Identity = 56/139 (40.29%), Postives = 85/139 (61.15%), Query Frame = 0 

Query: 1    MVEDMSVYFNVDAINKLYDSMN--VETPWHALVTRPLKRQARKALETIAWSWAEWKITQT 60
            +VED  V F  + IN+LYD  N     P   L+    +  A+K ++ I W  A+   T T
Sbjct: 1226 IVEDEKVPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTPT 1285

Query: 61   GKYQLYPYQLTTKTNMWNFFIKKKIMPTCHDSTMSLKYVMMIYCIMKQLAVDIGTIMSDS 120
             + QL+P+QLT + N+W FFIKKKI PT HDST+  +Y +++YCI  +   ++G +M+++
Sbjct: 1286 RRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNEA 1345

Query: 121  LLGWMEAPKGALPFPSIIE 138
             L WM  PK A PFP+ ++
Sbjct: 1346 FLSWMRNPKNAKPFPTTVK 1364

[Close]
BLAST of PI0025777 vs. NCBI nr
Match: TYK15967.1 (hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 7.0e-21
Identity = 56/139 (40.29%), Postives = 85/139 (61.15%), Query Frame = 0 

Query: 1   MVEDMSVYFNVDAINKLYDSMN--VETPWHALVTRPLKRQARKALETIAWSWAEWKITQT 60
           +VED  V F  + IN+LYD  N     P   L+    +  A+K ++ I W  A+   T T
Sbjct: 65  IVEDEKVPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTPT 124

Query: 61  GKYQLYPYQLTTKTNMWNFFIKKKIMPTCHDSTMSLKYVMMIYCIMKQLAVDIGTIMSDS 120
            + QL+P+QLT + N+W FFIKKKI PT HDST+  +Y +++YCI  +   ++G +M+++
Sbjct: 125 RRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNEA 184

Query: 121 LLGWMEAPKGALPFPSIIE 138
            L WM  PK A PFP+ ++
Sbjct: 185 FLSWMRNPKNAKPFPTTVK 203

[Close]
BLAST of PI0025777 vs. NCBI nr
Match: TYK22187.1 (hypothetical protein E5676_scaffold333G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-20
Identity = 55/133 (41.35%), Postives = 84/133 (63.16%), Query Frame = 0 

Query: 1   MVEDMSVYFNVDAINKLYDSMN--VETPWHALVTRPLKRQARKALETIAWSWAEWKITQT 60
           +VE   V F ++ IN+LY  +N     P  +L+  P K  +R  ++ IAW  A W  T T
Sbjct: 19  IVERKKVSFTMEEINELYGLLNDLDSYPSQSLIAEPTKGDSRMIIQLIAWLGAGWTRTTT 78

Query: 61  GKYQLYPYQLTTKTNMWNFFIKKKIMPTCHDSTMSLKYVMMIYCIMKQLAVDIGTIMSDS 120
              QLYP+QLTT+ N+W  FIKKKI+P C+DST+ ++Y++++YC M +   ++G +M+++
Sbjct: 79  RSLQLYPHQLTTEANVWLLFIKKKIIPMCYDSTVPIEYMLLLYCKMAKQPFNLGYMMNEA 138

Query: 121 LLGWMEAPKGALP 132
            LG M   KGA P
Sbjct: 139 FLGLMRNSKGAKP 151

The following BLAST results are available for this feature:
BLAST of PI0025777 vs.
Match NameE-valueIdentityDescription
BLAST of PI0025777 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V6M53.9e-2545.65Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002... [more]
A0A5D3D7L31.5e-2140.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U8063.4e-2140.29Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE... [more]
A0A5D3CVL73.4e-2140.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DES75.8e-2141.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of PI0025777 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062900.18.0e-2545.65gag/pol protein [Cucumis melo var. makuwa][more]
KAA0057652.13.1e-2140.15hypothetical protein E6C27_scaffold43054G00260 [Cucumis melo var. makuwa] >TYK19... [more]
KAA0049609.17.0e-2140.29transposase [Cucumis melo var. makuwa][more]
TYK15967.17.0e-2140.29hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa][more]
TYK22187.11.2e-2041.35hypothetical protein E5676_scaffold333G00570 [Cucumis melo var. makuwa][more]
BLAST of PI0025777 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0025777.1PI0025777.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane