PI0025732 (gene) Melon (PI 482460) v1

Overview


Name	PI0025732
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr08: 15361014 .. 15363342 (-)
RNA-Seq Expression	PI0025732
Synteny	PI0025732

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATCTAATTTTTGACTATGTGAGAGGTGATGCAATTCAATACAAATTTTTGTACATCCAAACTATCAATGTACTCAAAAAATCTAGACTTATATCTTAAACTTTCGACACTATATTTAAGGATCTCAATCAACCAATGTATTAAATATAAATTAGAATTTATGCGAAATGAATCCCTGACATTTCTTTTGGCCGAATAGATACAAAATGTAATGACCTAAAAATTCCAAGTATTTCCAAGTGCGCTACTACATGCATGCAACTACTAAAATTCTTATTTGTCGAAAAACTCATGTAGTAAAAATAAACCTCCCTATTAAAAGAGCTTTGAAAGAATAATTTTAAGAAAATAGTAAACCAATCAATAAATAAATAAAAACAAGTTTGAGATACTCTATCTAATTTTAGATAGAAATAAAATAAATACTATAAAATAAAATAATCAAATAACACCTAAATGTTTACTCTAAAATCAAAACATGACTCTAAAACTGGTGGTTCCCGAAGGAAACACAAAACTACTAGTAAATCATAACATCACACAGTCATATCTCATATTCAATAATGTACCATAATCCAATATCTTTCTTCAATACACTCACACGTAATGTCACATCACGAATAACTCAACAACATCTCAAGACACATAACAAATTTATCCTAAGTAGTCCGACTTAAAGGCAGTTCCAGTAGTAAGGTTGCTTACCTCAGCTAGTTCAATCCAAAAAATAAGCAACCATGACATTGAGCAAAAATACTCACTTACCACCGACACAAAATCCAAAATTTAACCAATTTCTAATTAACCCAACTTAATTCCAAACAACATCTATCGAAAACCATCACAATTTCCACAAAACAGTTAATGGATTATCTAAAAACAACATCTATCGAAAACCATCACAATTTCCACAAAACAGTTAATGGATTATCTAAGTAACTCAAGAATACCAATTCAAACTTTAATTCACATCTTAAAAAACCTCAACCACTGCGGTTGGCCTAGGCGGCGGCTGAACTGAAAATGGGGCGGCACGTGAGACGGGAAGAAGAAGGGTTTACTTTTGTTTTGAATTTTCATGTATCTCTAAGCCCATATTTAATAACTCTGGTAATAAATAACAATCACAAAATCATTATTATTTATTTTTCCCAGTTGATAATACTTATTTAACAAGAACTCCAAAATGAACTAAATAATACTTGAAATTTTGTTGGGTGTTATTAAATCGGTAATTTAACAACAACAAAGTAGATATAGTTAAAAATCATTATTTTTGTTTCTAATATAATAGTAATAACATAATACGATATAATTAAAATTTTAAAAAATATTTATATTAAAATTTTAATGAAAAATATCAAACAAAATTCAACAAATATACTTCTTACAAAAACAATAAAAACACAAATATTAAAATCAGTAAAATAATTTTGACAAATATTAAAATTAAAGATCTACAATAGGTAGAATTACAATTTTGTCATTGAAGAAAAAATAGAAAGGAAAAAAAAAAGGAAATTTAAGAGGATGGATTAAAAAAAAGGAAAAATAGAATGAAAAAAAAAAAGGAAGAAAGTGTTACCATTTAATACCCAAAAAAAAATAATGGTAGCTTCTCAACCTCCTTAATATTTGATTTGGTATAGTCCCTTCATCTTTTTGCACCCACGTTTCTTCCTCTCTCTTCCCCGTGACATTGATTATTAACTATCATCTTCTTTCTTTCTTCCTTAGGGTTTCCAATGCGATTTTCACTCATCTTCTAACCTCAATTATGTAGCTTTCTTCTTCTTCTTCCTCTTCTTCATCTATTTTTCATCTCAATCTTTCTTCCACTACGCCTCCTTCAATTTCTAATTTCCCTCCTTTCTTTTCTCTTACTTCCTTCTTCATCCCCGTCGTTGCTGGTTCTTACTTCCGGCACGGATTCATACTCAGATTGCAATTGCTACCCCAGGTTTGATTCCTTCTTTTCTCTTTTCCCTTTTCGTTTTCTACTACTTTTCTTTTTTATTCTTTTATTCTTCTGTTCTTTTTACGTATCTTTTTCTTCCTTTGCTGCTTATTTTCTGTCAATTTGCAGAATCGAAACATTGGGAGTATGGGATTTTGCCTTCTTTCAGGTTCTTTCATTAGTTAGGGTTGTGGGTTTTCGTTATATGAGTAATGCGGTTATTACTTGGGGTAAGCGGTAGTTGTAATGATTTTAATTTTGTGTTGTATTGGGTTTTTTTTTGGACTTTAGGGTTGTGCAGAACATTGGGTTGTTAGTGAAGTTCAGGACTTTCCTGTGTTTGAGGAATTGGGAGGTTTGGTTTAA

mRNA sequence

ATGGAGGATCTAATTTTTGACTATGTGAGAGGTGATGCAATTCAATACAAATTTTTGTACATCCAAACTATCAATCTTTCTTCTTCTTCTTCCTCTTCTTCATCTATTTTTCATCTCAATCTTTCTTCCACTACGCCTCCTTCAATTTCTAATTTCCCTCCTTTCTTTTCTCTTACTTCCTTCTTCATCCCCGTCGTTGCTGGTTCTTACTTCCGGCACGGATTCATACTCAGATTGCAATTGCTACCCCAGGGTTGTGCAGAACATTGGGTTGTTAGTGAAGTTCAGGACTTTCCTGTGTTTGAGGAATTGGGAGGTTTGGTTTAA

Coding sequence (CDS)

ATGGAGGATCTAATTTTTGACTATGTGAGAGGTGATGCAATTCAATACAAATTTTTGTACATCCAAACTATCAATCTTTCTTCTTCTTCTTCCTCTTCTTCATCTATTTTTCATCTCAATCTTTCTTCCACTACGCCTCCTTCAATTTCTAATTTCCCTCCTTTCTTTTCTCTTACTTCCTTCTTCATCCCCGTCGTTGCTGGTTCTTACTTCCGGCACGGATTCATACTCAGATTGCAATTGCTACCCCAGGGTTGTGCAGAACATTGGGTTGTTAGTGAAGTTCAGGACTTTCCTGTGTTTGAGGAATTGGGAGGTTTGGTTTAA

Protein sequence

MEDLIFDYVRGDAIQYKFLYIQTINLSSSSSSSSSIFHLNLSSTTPPSISNFPPFFSLTSFFIPVVAGSYFRHGFILRLQLLPQGCAEHWVVSEVQDFPVFEELGGLV

Homology

[Close]

BLAST of PI0025732 vs. ExPASy TrEMBL
Match: A0A0A0KXG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G307920 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.0e-19
Identity = 68/123 (55.28%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 1   MEDLIFDYVRGDAIQYKFLYIQTIN-----LSSSSSSSSSIFHLNLSSTT-----PPSIS 60
           MEDLIFDYV+GD IQY+F+YIQTIN       SSS+ +   F  +  S +       SIS
Sbjct: 1   MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSIS 60

Query: 61  NFPP-FFSLTSFFIPVVAGSYFRHGFI------LRLQ-------LLPQGCAEHWVVSEVQ 100
           +FPP FFSLTSFFIP VAGSYFRHGFI      LR++        L Q CAE+W V EVQ
Sbjct: 61  DFPPFFFSLTSFFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQ 120

[Close]

BLAST of PI0025732 vs. NCBI nr
Match: KGN54350.1 (hypothetical protein Csa_018029 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 8.3e-19
Identity = 68/123 (55.28%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 1   MEDLIFDYVRGDAIQYKFLYIQTIN-----LSSSSSSSSSIFHLNLSSTT-----PPSIS 60
           MEDLIFDYV+GD IQY+F+YIQTIN       SSS+ +   F  +  S +       SIS
Sbjct: 1   MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSIS 60

Query: 61  NFPP-FFSLTSFFIPVVAGSYFRHGFI------LRLQ-------LLPQGCAEHWVVSEVQ 100
           +FPP FFSLTSFFIP VAGSYFRHGFI      LR++        L Q CAE+W V EVQ
Sbjct: 61  DFPPFFFSLTSFFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQ 120

The following BLAST results are available for this feature:

BLAST of PI0025732 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025732 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXG8	4.0e-19	55.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G307920 PE=4 SV=1	[more]

BLAST of PI0025732 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54350.1	8.3e-19	55.28	hypothetical protein Csa_018029 [Cucumis sativus]	[more]

BLAST of PI0025732 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025732.1	PI0025732.1	mRNA