PI0025552 (gene) Melon (PI 482460) v1

Overview


Name	PI0025552
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr01: 3814293 .. 3814650 (+)
RNA-Seq Expression	PI0025552
Synteny	PI0025552

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCCAAGGCTTTCATCCTCCTCGGTCTCCTTTTCGCCGCTGTCATCCTGGAGGTAACCGCAGTTACCGCCGGGGACGTAAAATCTAGTGAGTCTAATAATTCATTAGATCATACATTGCAATGTACTCTTTACTTATACTTGTTTCATTAGTGTTATATATATGTGTATATGTTGGTTCTCATGAGATCATTAACATTTTGTAGATGAAGCTTTTAAACAAACCGATGAAGTCGAGGATGTCAAGCACCACGATTTGGGAGGAGAACACACTTTACTTGCCCAATGCCACCACAATTGCCACAAACGTTGCTGTAAGTGTGTCCACGGTCGTTGCGTCAAGTGCTGCAGCTGA

mRNA sequence

ATGAATTCCAAGGCTTTCATCCTCCTCGGTCTCCTTTTCGCCGCTGTCATCCTGGAGGTAACCGCAGTTACCGCCGGGGACGTAAAATCTAATGAAGCTTTTAAACAAACCGATGAAGTCGAGGATGTCAAGCACCACGATTTGGGAGGAGAACACACTTTACTTGCCCAATGCCACCACAATTGCCACAAACGTTGCTGTAAGTGTGTCCACGGTCGTTGCGTCAAGTGCTGCAGCTGA

Coding sequence (CDS)

ATGAATTCCAAGGCTTTCATCCTCCTCGGTCTCCTTTTCGCCGCTGTCATCCTGGAGGTAACCGCAGTTACCGCCGGGGACGTAAAATCTAATGAAGCTTTTAAACAAACCGATGAAGTCGAGGATGTCAAGCACCACGATTTGGGAGGAGAACACACTTTACTTGCCCAATGCCACCACAATTGCCACAAACGTTGCTGTAAGTGTGTCCACGGTCGTTGCGTCAAGTGCTGCAGCTGA

Protein sequence

MNSKAFILLGLLFAAVILEVTAVTAGDVKSNEAFKQTDEVEDVKHHDLGGEHTLLAQCHHNCHKRCCKCVHGRCVKCCS

Homology

[Close]

BLAST of PI0025552 vs. ExPASy TrEMBL
Match: A0A0A0K5A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1  MNSKAFILLGLLFAAVIL--EVTAVTAGDVKSNEAFKQTDEVEDVKHHDLGGEHTL-LAQ 60
          M+SK+FILLGLLFA V+   E   VTA D K  EA  +T EV++V+ H  GG H+  LA+
Sbjct: 1  MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60

Query: 61 CHHNCHKRCCKCVHGRCVKCCS 80
          C H C++ CC+C  GRC++CCS
Sbjct: 61 CLHGCNRGCCECFRGRCIRCCS 82

[Close]

BLAST of PI0025552 vs. NCBI nr
Match: KAE8645721.1 (hypothetical protein Csa_020383 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 3.2e-28
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MNSKAFILLGLLFAAVILEVTAVTA-GDVKSNEAFKQTDEVEDVKHHDLGGEHTLLAQCH 60
          MNSKAFILLGLLFAAVILEVTAVTA  D+KSNEAFKQTDE+ DVKHHDLGGE   LAQCH
Sbjct: 1  MNSKAFILLGLLFAAVILEVTAVTATNDIKSNEAFKQTDEINDVKHHDLGGEDASLAQCH 60

Query: 61 HNCHKRCCKCVHGRCVKCC 79
          H+CHK CCKC HG CVKCC
Sbjct: 61 HHCHKGCCKCSHGHCVKCC 79

[Close]

BLAST of PI0025552 vs. NCBI nr
Match: XP_038888333.1 (glycine-rich protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 1.9e-12
Identity = 45/83 (54.22%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 1  MNSKAFILLGLLFAAVIL---EVTAVTAGDVKSNEAFKQTDEVEDVKHHDLGGEHTL-LA 60
          M+SKAFI LGLLFA V+L   E   V A DVK  EA  +T EV+DV+ H  GG H   LA
Sbjct: 1  MSSKAFIFLGLLFAIVVLFSSEEVTVMARDVKFEEAMMETGEVDDVERHGFGGGHARNLA 60

Query: 61 QCHHNCHKRCCKCVHGRCVKCCS 80
          +C H C+  CC+C  GRC++CCS
Sbjct: 61 ECLHGCNHGCCECFRGRCIRCCS 83

[Close]

BLAST of PI0025552 vs. NCBI nr
Match: XP_004144531.1 (glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_020301 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 2.5e-12
Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1  MNSKAFILLGLLFAAVIL--EVTAVTAGDVKSNEAFKQTDEVEDVKHHDLGGEHTL-LAQ 60
          M+SK+FILLGLLFA V+   E   VTA D K  EA  +T EV++V+ H  GG H+  LA+
Sbjct: 1  MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60

Query: 61 CHHNCHKRCCKCVHGRCVKCCS 80
          C H C++ CC+C  GRC++CCS
Sbjct: 61 CLHGCNRGCCECFRGRCIRCCS 82

[Close]

BLAST of PI0025552 vs. NCBI nr
Match: XP_038888334.1 (glycine-rich protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 77.4 bits (189), Expect = 6.1e-11
Identity = 45/83 (54.22%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 1  MNSKAFILLGLLFAAVIL---EVTAVTAGDVKSNEAFKQTDEVEDVKHHDLGGEHTL-LA 60
          M+SKAFI LGLLFA V+L   E   V A DVK  EA  +T EV+DV+ H  GG H   LA
Sbjct: 1  MSSKAFIFLGLLFAIVVLFSSEEVTVMARDVKF-EAMMETGEVDDVERHGFGGGHARNLA 60

Query: 61 QCHHNCHKRCCKCVHGRCVKCCS 80
          +C H C+  CC+C  GRC++CCS
Sbjct: 61 ECLHGCNHGCCECFRGRCIRCCS 82

The following BLAST results are available for this feature:

BLAST of PI0025552 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025552 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5A1	1.2e-12	52.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1	[more]

BLAST of PI0025552 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645721.1	3.2e-28	84.81	hypothetical protein Csa_020383 [Cucumis sativus]	[more]
XP_038888333.1	1.9e-12	54.22	glycine-rich protein-like isoform X1 [Benincasa hispida]	[more]
XP_004144531.1	2.5e-12	52.44	glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_0203...	[more]
XP_038888334.1	6.1e-11	54.22	glycine-rich protein-like isoform X2 [Benincasa hispida]	[more]

BLAST of PI0025552 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 1..51 e-value: 2.0E-7 score: 31.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025552.1	PI0025552.1	mRNA