PI0025481 (gene) Melon (PI 482460) v1

Overview


Name	PI0025481
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	chr12: 9540955 .. 9541809 (+)
RNA-Seq Expression	PI0025481
Synteny	PI0025481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGAGTATTTTAATAATTCTCAATTTTATTGAAAAAGGTTCTGTGAATTTATTCCGCTGCGTAAGGGCTTTAATCCCTTCACCTAGTAGTGCTGACTATTGGAAGGTTCATTTGTGTGGTTTGTGTTTTGTTATCTCTCCTACTGTTATCAATCAGTATCTTGATGTTACCTTGCCTTCTGATTTCTCAATGACTCTGCCATCTCCAAAAGTGTTGCCTTTTGAGTTGACTGGTGGAACGGTTCATTTGTGGCCGAACAGTTGCATGTTATCTCCTTCAGTATCAAATATATCATTCTTCACAAAATAGGCATTGCCAACTGGTACCCTTTTACACATGCTTCGAGTGTCTCTACTACCTTAGCTAACTTTATTTATTTGATTGGTACTTGGACCCCTGTAGATGTTGGTCAGTTTGTCTTTAATTAGCTTCTCAGGCATGTTGAGACCTTTGGGGTGAAGATTCTCATCTGCTTTCCTCGCTTACTGTGTAGTATCATGTTTGCTCAGCATTCGTCTGTGTTAACTACGAATGATGCACCTAGTCCAACCTCTAGGAATCTTAGTCTTAGCTACTGTCTGTTTCAAGGGTCTCATGTTCCTGAAATTGCTTATAGCATGCATCCTCTGTGTCATGCTGACTCAAATCTCCCTCCTGGTGTTCGGATGCCAAATGATGGTATGTTGCTCCCTCCTACCTTGGGCTCTCAGATACTGCAGCTCCTTTCCACTAAGTCTGGTTCTCTGAATGGTCTCATTCACACCCTCTTTGAGCATCATGCTGTTGTTGATTCCATGCTCCACTCCCTTACTGTGTTGCTTCCCTCTTTCAGGGATGCTTTCGCTAGTTAG

mRNA sequence

ATGTACGAGCATGTTGAGACCTTTGGGGTGAAGATTCTCATCTGCTTTCCTCGCTTACTGTGTAGTATCATGTTTGCTCAGCATTCGTCTGTGTTAACTACGAATGATGCACCTAGTCCAACCTCTAGGAATCTTAGTCTTAGCTACTGTCTGTTTCAAGGGTCTCATGTTCCTGAAATTGCTTATAGCATGCATCCTCTGTGTCATGCTGACTCAAATCTCCCTCCTGGTGTTCGGATGCCAAATGATGGTATGTTGCTCCCTCCTACCTTGGGCTCTCAGATACTGCAGCTCCTTTCCACTAAGTCTGGTTCTCTGAATGGTCTCATTCACACCCTCTTTGAGCATCATGCTGTTGTTGATTCCATGCTCCACTCCCTTACTGTGTTGCTTCCCTCTTTCAGGGATGCTTTCGCTAGTTAG

Coding sequence (CDS)

ATGTACGAGCATGTTGAGACCTTTGGGGTGAAGATTCTCATCTGCTTTCCTCGCTTACTGTGTAGTATCATGTTTGCTCAGCATTCGTCTGTGTTAACTACGAATGATGCACCTAGTCCAACCTCTAGGAATCTTAGTCTTAGCTACTGTCTGTTTCAAGGGTCTCATGTTCCTGAAATTGCTTATAGCATGCATCCTCTGTGTCATGCTGACTCAAATCTCCCTCCTGGTGTTCGGATGCCAAATGATGGTATGTTGCTCCCTCCTACCTTGGGCTCTCAGATACTGCAGCTCCTTTCCACTAAGTCTGGTTCTCTGAATGGTCTCATTCACACCCTCTTTGAGCATCATGCTGTTGTTGATTCCATGCTCCACTCCCTTACTGTGTTGCTTCCCTCTTTCAGGGATGCTTTCGCTAGTTAG

Protein sequence

MYEHVETFGVKILICFPRLLCSIMFAQHSSVLTTNDAPSPTSRNLSLSYCLFQGSHVPEIAYSMHPLCHADSNLPPGVRMPNDGMLLPPTLGSQILQLLSTKSGSLNGLIHTLFEHHAVVDSMLHSLTVLLPSFRDAFAS

Homology

[Close]

BLAST of PI0025481 vs. ExPASy TrEMBL
Match: A0A5A7TCJ0 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00840 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.7e-14
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 1   MYEHVETFGVKILICFPRLLCSIMFAQHSSVLTTNDAPSPTSRNLSLSYCLFQGSHVPEI 60
           +  HV +FGVKILI  PR    ++   +  VLTT++AP P S+ LSLSY LFQG HVP+I
Sbjct: 741 LLRHVGSFGVKILIALPRFFSGLLLHLNVVVLTTSNAPGPDSKTLSLSYRLFQGIHVPDI 800

Query: 61  AYSMHPLCHADSNLPPGVRMPNDGMLLPPTLGSQILQLLSTKSGSLNGLIHTLFEHHAVV 120
            + MHP                DG  +   L S+I+  L+ +S +L+ LI+ L E    V
Sbjct: 801 DHDMHPSRGPRLFDTSNWNKSADGFFVDRELASRIVNSLTAESQALSTLINLLSERRLEV 860

Query: 121 DSMLHSLTVLLPS 134
           D+++  L    PS
Sbjct: 861 DALIRHLKSFAPS 873

[Close]

BLAST of PI0025481 vs. ExPASy TrEMBL
Match: A0A5D3D6T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G001260 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.0e-14
Identity = 52/133 (39.10%), Postives = 72/133 (54.14%), Query Frame = 0


Query: 1   MYEHVETFGVKILICFPRLLCSIMFAQHSSVLTTNDAPSPTSRNLSLSYCLFQGSHVPEI 60
           +  HVETFGVKI I   R   S++   +  +LT NDAP P  + LSLSY LFQGSHVP I
Sbjct: 186 LLRHVETFGVKIPIPLSRFFSSLLVHLNVDILTPNDAPGPDLKTLSLSYRLFQGSHVPNI 245

Query: 61  AYSMHPLCHADSNLPPGVRMPNDGMLLPPTLGSQILQLLSTKSGSLNGLIHTLFEHHAVV 120
            + M P  +        V    +G  +   L S+I+ +L  +S +L+  I+ L      V
Sbjct: 246 EHDMRPSRNPHMFDTDDVDENTEGFFVHHGLASRIINMLMAESQALSTSINMLSNRRLEV 305

Query: 121 DSMLHSLTVLLPS 134
           DS++  L  L+PS
Sbjct: 306 DSLVRHLKTLIPS 318

[Close]

BLAST of PI0025481 vs. ExPASy TrEMBL
Match: A0A5D3D755 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00660 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.9e-14
Identity = 52/138 (37.68%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 1    MYEHVETFGVKILICFPRLLCSIMFAQHSSVLTTNDAPSPTSRNLSLSYCLFQGSHVPEI 60
            +  HV +FGVK+ I  PR    ++   + +VLTT+DAP P  + LSLSY LFQGSHVP+I
Sbjct: 1310 LLRHVRSFGVKLPIALPRFFSGLLLHLNVAVLTTSDAPGPDPKTLSLSYRLFQGSHVPDI 1369

Query: 61   AYSMHPLCHADSNLPPGVRM-----PNDGMLLPPTLGSQILQLLSTKSGSLNGLIHTLFE 120
             + ++      S  P    M      +DG  +   L S+IL  L+ +S SL  +I  + E
Sbjct: 1370 DHDVY-----SSRWPRVFDMTDCNEASDGFFIDKELASRILNSLTAESHSLATVISLMSE 1429

Query: 121  HHAVVDSMLHSLTVLLPS 134
             H  +DS++  L    PS
Sbjct: 1430 RHLEIDSLIRHLKTFAPS 1442

[Close]

BLAST of PI0025481 vs. ExPASy TrEMBL
Match: A0A5A7UVR7 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001010 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.9e-14
Identity = 52/138 (37.68%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 1    MYEHVETFGVKILICFPRLLCSIMFAQHSSVLTTNDAPSPTSRNLSLSYCLFQGSHVPEI 60
            +  HV +FGVK+ I  PR    ++   + +VLTT+DAP P  + LSLSY LFQGSHVP+I
Sbjct: 1290 LLRHVRSFGVKLPIALPRFFSGLLLHLNVAVLTTSDAPGPDPKTLSLSYRLFQGSHVPDI 1349

Query: 61   AYSMHPLCHADSNLPPGVRM-----PNDGMLLPPTLGSQILQLLSTKSGSLNGLIHTLFE 120
             + ++      S  P    M      +DG  +   L S+IL  L+ +S SL  +I  + E
Sbjct: 1350 DHDVY-----SSRWPRVFDMTDCNEASDGFFIDKELASRILNSLTAESHSLATVISLMSE 1409

Query: 121  HHAVVDSMLHSLTVLLPS 134
             H  +DS++  L    PS
Sbjct: 1410 RHLEIDSLIRHLKTFAPS 1422

[Close]

BLAST of PI0025481 vs. ExPASy TrEMBL
Match: A0A5A7UCJ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G001780 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.1e-14
Identity = 51/133 (38.35%), Postives = 72/133 (54.14%), Query Frame = 0


Query: 1   MYEHVETFGVKILICFPRLLCSIMFAQHSSVLTTNDAPSPTSRNLSLSYCLFQGSHVPEI 60
           +  HVETFGVKI I   R   S++   +  +LT NDAP P  + LSLSY LFQGSHVP I
Sbjct: 186 LLRHVETFGVKIPIPLSRFFSSLLVHLNVDILTPNDAPGPDLKTLSLSYRLFQGSHVPNI 245

Query: 61  AYSMHPLCHADSNLPPGVRMPNDGMLLPPTLGSQILQLLSTKSGSLNGLIHTLFEHHAVV 120
            + M P  +        V    +G  +   L S+I+ + + +S +L+  I+ L      V
Sbjct: 246 EHDMRPSRNPHMFDTDDVDENTEGFFVHHGLASRIINMFTAESQALSTSINMLSNRRLEV 305

Query: 121 DSMLHSLTVLLPS 134
           DS++  L  L+PS
Sbjct: 306 DSLVRHLKTLIPS 318

[Close]

BLAST of PI0025481 vs. NCBI nr
Match: KAA0038999.1 (envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.6e-14
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 1   MYEHVETFGVKILICFPRLLCSIMFAQHSSVLTTNDAPSPTSRNLSLSYCLFQGSHVPEI 60
           +  HV +FGVKILI  PR    ++   +  VLTT++AP P S+ LSLSY LFQG HVP+I
Sbjct: 741 LLRHVGSFGVKILIALPRFFSGLLLHLNVVVLTTSNAPGPDSKTLSLSYRLFQGIHVPDI 800

Query: 61  AYSMHPLCHADSNLPPGVRMPNDGMLLPPTLGSQILQLLSTKSGSLNGLIHTLFEHHAVV 120
            + MHP                DG  +   L S+I+  L+ +S +L+ LI+ L E    V
Sbjct: 801 DHDMHPSRGPRLFDTSNWNKSADGFFVDRELASRIVNSLTAESQALSTLINLLSERRLEV 860

Query: 121 DSMLHSLTVLLPS 134
           D+++  L    PS
Sbjct: 861 DALIRHLKSFAPS 873

[Close]

BLAST of PI0025481 vs. NCBI nr
Match: TYK19190.1 (uncharacterized protein E5676_scaffold522G001260 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 6.1e-14
Identity = 52/133 (39.10%), Postives = 72/133 (54.14%), Query Frame = 0


Query: 1   MYEHVETFGVKILICFPRLLCSIMFAQHSSVLTTNDAPSPTSRNLSLSYCLFQGSHVPEI 60
           +  HVETFGVKI I   R   S++   +  +LT NDAP P  + LSLSY LFQGSHVP I
Sbjct: 186 LLRHVETFGVKIPIPLSRFFSSLLVHLNVDILTPNDAPGPDLKTLSLSYRLFQGSHVPNI 245

Query: 61  AYSMHPLCHADSNLPPGVRMPNDGMLLPPTLGSQILQLLSTKSGSLNGLIHTLFEHHAVV 120
            + M P  +        V    +G  +   L S+I+ +L  +S +L+  I+ L      V
Sbjct: 246 EHDMRPSRNPHMFDTDDVDENTEGFFVHHGLASRIINMLMAESQALSTSINMLSNRRLEV 305

Query: 121 DSMLHSLTVLLPS 134
           DS++  L  L+PS
Sbjct: 306 DSLVRHLKTLIPS 318

[Close]

BLAST of PI0025481 vs. NCBI nr
Match: TYK19345.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 8.0e-14
Identity = 52/138 (37.68%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 1    MYEHVETFGVKILICFPRLLCSIMFAQHSSVLTTNDAPSPTSRNLSLSYCLFQGSHVPEI 60
            +  HV +FGVK+ I  PR    ++   + +VLTT+DAP P  + LSLSY LFQGSHVP+I
Sbjct: 1310 LLRHVRSFGVKLPIALPRFFSGLLLHLNVAVLTTSDAPGPDPKTLSLSYRLFQGSHVPDI 1369

Query: 61   AYSMHPLCHADSNLPPGVRM-----PNDGMLLPPTLGSQILQLLSTKSGSLNGLIHTLFE 120
             + ++      S  P    M      +DG  +   L S+IL  L+ +S SL  +I  + E
Sbjct: 1370 DHDVY-----SSRWPRVFDMTDCNEASDGFFIDKELASRILNSLTAESHSLATVISLMSE 1429

Query: 121  HHAVVDSMLHSLTVLLPS 134
             H  +DS++  L    PS
Sbjct: 1430 RHLEIDSLIRHLKTFAPS 1442

[Close]

BLAST of PI0025481 vs. NCBI nr
Match: KAA0059174.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 8.0e-14
Identity = 52/138 (37.68%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 1    MYEHVETFGVKILICFPRLLCSIMFAQHSSVLTTNDAPSPTSRNLSLSYCLFQGSHVPEI 60
            +  HV +FGVK+ I  PR    ++   + +VLTT+DAP P  + LSLSY LFQGSHVP+I
Sbjct: 1290 LLRHVRSFGVKLPIALPRFFSGLLLHLNVAVLTTSDAPGPDPKTLSLSYRLFQGSHVPDI 1349

Query: 61   AYSMHPLCHADSNLPPGVRM-----PNDGMLLPPTLGSQILQLLSTKSGSLNGLIHTLFE 120
             + ++      S  P    M      +DG  +   L S+IL  L+ +S SL  +I  + E
Sbjct: 1350 DHDVY-----SSRWPRVFDMTDCNEASDGFFIDKELASRILNSLTAESHSLATVISLMSE 1409

Query: 121  HHAVVDSMLHSLTVLLPS 134
             H  +DS++  L    PS
Sbjct: 1410 RHLEIDSLIRHLKTFAPS 1422

[Close]

BLAST of PI0025481 vs. NCBI nr
Match: KAA0053603.1 (uncharacterized protein E6C27_scaffold190G001780 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-13
Identity = 51/133 (38.35%), Postives = 72/133 (54.14%), Query Frame = 0


Query: 1   MYEHVETFGVKILICFPRLLCSIMFAQHSSVLTTNDAPSPTSRNLSLSYCLFQGSHVPEI 60
           +  HVETFGVKI I   R   S++   +  +LT NDAP P  + LSLSY LFQGSHVP I
Sbjct: 186 LLRHVETFGVKIPIPLSRFFSSLLVHLNVDILTPNDAPGPDLKTLSLSYRLFQGSHVPNI 245

Query: 61  AYSMHPLCHADSNLPPGVRMPNDGMLLPPTLGSQILQLLSTKSGSLNGLIHTLFEHHAVV 120
            + M P  +        V    +G  +   L S+I+ + + +S +L+  I+ L      V
Sbjct: 246 EHDMRPSRNPHMFDTDDVDENTEGFFVHHGLASRIINMFTAESQALSTSINMLSNRRLEV 305

Query: 121 DSMLHSLTVLLPS 134
           DS++  L  L+PS
Sbjct: 306 DSLVRHLKTLIPS 318

The following BLAST results are available for this feature:

BLAST of PI0025481 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TCJ0	1.7e-14	39.10	Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84...	[more]
A0A5D3D6T2	3.0e-14	39.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D755	3.9e-14	37.68	F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00660 PE=4 SV...	[more]
A0A5A7UVR7	3.9e-14	37.68	F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001010 PE=4 S...	[more]
A0A5A7UCJ0	5.1e-14	38.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0025481 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038999.1	3.6e-14	39.10	envelope-like protein [Cucumis melo var. makuwa]	[more]
TYK19190.1	6.1e-14	39.10	uncharacterized protein E5676_scaffold522G001260 [Cucumis melo var. makuwa]	[more]
TYK19345.1	8.0e-14	37.68	F5J5.1 [Cucumis melo var. makuwa]	[more]
KAA0059174.1	8.0e-14	37.68	F5J5.1 [Cucumis melo var. makuwa]	[more]
KAA0053603.1	1.0e-13	38.35	uncharacterized protein E6C27_scaffold190G001780 [Cucumis melo var. makuwa]	[more]

BLAST of PI0025481 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025481.1	PI0025481.1	mRNA