PI0025354 (gene) Melon (PI 482460) v1

Overview


Name	PI0025354
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	chr07: 21586352 .. 21588362 (-)
RNA-Seq Expression	PI0025354
Synteny	PI0025354

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTTTCATTTTCTTGTGTTTCCCCCCTTCTATTACTCCCCCACTCAACAAAATTCTTGTTACCTTCTCTTCACTCTACTCCAACACATTTACCTTTGTTTTGTTTGTAAATCTTGGAGAGATCATATGTCAAGCAGTAAAGGCAAGGATGTTCAGGAAGGATCATCATCAAATTCCTCTTCTTCCTCGTCTCTAATCGTTGTTGTTGACGATCACAATCATCAACAACAACAACAGTTTGAAGGAGGAGATGAAGCAGCACCAACATCTGTAGCACCGGTGATTAGTCGGTACGAGTCACAAAAGAGGAGAGATTGGTACACATTTGGGCAATATTTGAGGAACCAAAGGCCACCATTGGCTATATCACAATGCAATTCAAGTCATGTATTGGAATTCCTAAGATATCTAGACCAATTTGGGAAGACAAAAGTGCATTTAAATGGGTGTGGTTTCTTTGGAGAACCTGAGCCAGCAGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGACGCCTTAGAGCTGCTTATGAAGAAAATGGAGGCTCATCAGACACTAATCCATTTGCTAGTGGTGCTATTAGGGTTTATTTGAGGGAAGTTAGGGACTCTCAATCCAAGGCAAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAATTAACACTCATCAACAAGGTAAATCCTAATTCAAATATTTATATACATGTTATTTAGTATTATAACAAGGTTAAACGCTAATCGAACAAAGTTTGAAATACTGGAAATTCGAACCTTCAACTTTTAGAGAAGGAACTGAATGATTAGTGTATATATCAAATGCTTTGTTTGTTTTAGAACATATGTGAGACTGATTTTGAAGTGATCAAAATTATTTATTCGTGTTCATCAAAATAGATAAAAAAATATATATATGGTTTTATACTTGTCAAAATGATTAAGATCAACATATTTATAACAAAGTGAATGGGAAAAATAATATCGTTTTGTTTTTATATTAAAGAAAAGTTCAAGGAATGGAGAATATATAAAATTTAATGATTGTAGATCAGTTTCAAACTTGTCAAAATAAACTTAGTTCAACTATAATTAACGTGATTTTCTCCTTAGATCAGATCAAAGGTTTTGCAATATTTCTCATCTCCGATAGTTCTTGAAAAAAAAAAAAGCTTCAAAGCCCTAAACTTCATAATACATGAGCTAGGGTTTATGGTTGGTTTCTTTAGAATATATATGATTAGAGCTCTAGAACAATTATTAGTATTCTTTAACTTTTTCCTTGGACACCTTTTTCTTTTTCAAGAAATATAAAATCATTTGTAATATTCCAAATAAATTTCCATCCCTTTTTTTTTCATTTGTCTCTTAGTCTTTCTATTTTATTGTATCTGATAACCCATTTTGTTATAATATTAATACAAAATATCATTCTCTATATATATACTTCCTTTTTTTTTTCTTTTTTAATTCCGTTTGGTTTAAAATACATTTTGAAATTCTCTCTTTTTTTTCAATTCCTTCTCTATATTTTCGAAAGTTTTAATATCATCCTTGACATTTCAATTTATTGAGTGATTATTAATTTTTATGAAGTGTCATAATTAATTAGAAGTTATATGCATGTGCTTCTATGACATGAGTATAGTAATAATATGTGTTGCAAATTAACATATGTGAGGATGAAATGAAAAAGGAGAACAAATTAAAACTAGATTAAGTGGTAATTCAACTATATCTTTGGGATAAAATGAACATGTATATGAACTTTGTTGGTTGCTTATTACAATTTTTTAGAATTATTTTCAGGGGCCTAAGAGAAGGAGTAGTGAGCAGTTTGATGTGTTTTTGGAGGGTCTCAGTTGCAATATGGATATTCATCTCAAATTAAACAACACATGCATGCAAAAAGCTCTTTTGAGTTAAAGTAATTTTAATTAAGTTGTTTTTTTTTTAATCTTTCTTATACCTTAAAGCATTGTGGT

mRNA sequence

ATTCTTTCATTTTCTTGTGTTTCCCCCCTTCTATTACTCCCCCACTCAACAAAATTCTTGTTACCTTCTCTTCACTCTACTCCAACACATTTACCTTTGTTTTGTTTGTAAATCTTGGAGAGATCATATGTCAAGCAGTAAAGGCAAGGATGTTCAGGAAGGATCATCATCAAATTCCTCTTCTTCCTCGTCTCTAATCGTTGTTGTTGACGATCACAATCATCAACAACAACAACAGTTTGAAGGAGGAGATGAAGCAGCACCAACATCTGTAGCACCGGTGATTAGTCGGTACGAGTCACAAAAGAGGAGAGATTGGTACACATTTGGGCAATATTTGAGGAACCAAAGGCCACCATTGGCTATATCACAATGCAATTCAAGTCATGTATTGGAATTCCTAAGATATCTAGACCAATTTGGGAAGACAAAAGTGCATTTAAATGGGTGTGGTTTCTTTGGAGAACCTGAGCCAGCAGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGACGCCTTAGAGCTGCTTATGAAGAAAATGGAGGCTCATCAGACACTAATCCATTTGCTAGTGGTGCTATTAGGGTTTATTTGAGGGAAGTTAGGGACTCTCAATCCAAGGCAAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAATTAACACTCATCAACAAGGGGCCTAAGAGAAGGAGTAGTGAGCAGTTTGATGTGTTTTTGGAGGGTCTCAGTTGCAATATGGATATTCATCTCAAATTAAACAACACATGCATGCAAAAAGCTCTTTTGAGTTAAAGTAATTTTAATTAAGTTGTTTTTTTTTTAATCTTTCTTATACCTTAAAGCATTGTGGT

Coding sequence (CDS)

ATGTCAAGCAGTAAAGGCAAGGATGTTCAGGAAGGATCATCATCAAATTCCTCTTCTTCCTCGTCTCTAATCGTTGTTGTTGACGATCACAATCATCAACAACAACAACAGTTTGAAGGAGGAGATGAAGCAGCACCAACATCTGTAGCACCGGTGATTAGTCGGTACGAGTCACAAAAGAGGAGAGATTGGTACACATTTGGGCAATATTTGAGGAACCAAAGGCCACCATTGGCTATATCACAATGCAATTCAAGTCATGTATTGGAATTCCTAAGATATCTAGACCAATTTGGGAAGACAAAAGTGCATTTAAATGGGTGTGGTTTCTTTGGAGAACCTGAGCCAGCAGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGACGCCTTAGAGCTGCTTATGAAGAAAATGGAGGCTCATCAGACACTAATCCATTTGCTAGTGGTGCTATTAGGGTTTATTTGAGGGAAGTTAGGGACTCTCAATCCAAGGCAAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAATTAACACTCATCAACAAGGGGCCTAA

Protein sequence

MSSSKGKDVQEGSSSNSSSSSSLIVVVDDHNHQQQQQFEGGDEAAPTSVAPVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYKKKKKKKIPINTHQQGA

Homology

[Close]

BLAST of PI0025354 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 8.8e-62
Identity = 109/132 (82.58%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 54  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 113
           SRYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVL+FLRYLDQFGKTKVH+ GC F+G+
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 114 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 173
           PEP  PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFASGAIRVYLREVR+ Q+KA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 174 RGIPYKKKKKKK 186
           RGIPYKKKKKKK
Sbjct: 144 RGIPYKKKKKKK 155

[Close]

BLAST of PI0025354 vs. ExPASy Swiss-Prot
Match: Q9ZVA0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.3e-60
Identity = 117/191 (61.26%), Postives = 142/191 (74.35%), Query Frame = 0


Query: 3   SSKGKDVQEGSSSNSSSSSSLIVVVDDHNHQQQQQFEGGDEAAPTSVAPVISRYESQKRR 62
           S+KGK + EGSS                  Q Q Q +     +P +  P +SRYESQKRR
Sbjct: 5   SNKGKGIAEGSS----------------QPQSQPQPQPHQPQSPPN-PPALSRYESQKRR 64

Query: 63  DWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEPAGPCTC 122
           DW TF QYLRNQ+PP+ ISQC S+H+L+FL+YLDQFGKTKVH++GC FFG+ EPAG C C
Sbjct: 65  DWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNC 124

Query: 123 PLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYK--K 182
           PL+QAWGSLDALIGRLRAA+EENGG  + NPFA G IRV+LREVRDSQ+KARG+PYK  K
Sbjct: 125 PLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRK 178

Query: 183 KKKKKIPINTH 192
           K+KK+ P+ +H
Sbjct: 185 KRKKRNPMKSH 178

[Close]

BLAST of PI0025354 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.1e-59
Identity = 104/148 (70.27%), Postives = 126/148 (85.14%), Query Frame = 0


Query: 40  GGDEAAPTSVAP--VISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQ 99
           GG  A   +  P   +SRYESQKRRDW TF QYLRN RPPL +++C+ +HV+EFLRYLDQ
Sbjct: 14  GGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQ 73

Query: 100 FGKTKVHLNGCGFFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASG 159
           FGKTKVH +GC F+G+P P GPC CPLRQAWGSLDALIGRLRAAYEE+GG+ ++NPFA+ 
Sbjct: 74  FGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAAR 133

Query: 160 AIRVYLREVRDSQSKARGIPYKKKKKKK 186
           A+R+YLREVRDSQ+KARGIPY+KKK+K+
Sbjct: 134 AVRIYLREVRDSQAKARGIPYEKKKRKR 161

[Close]

BLAST of PI0025354 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.1e-59
Identity = 104/148 (70.27%), Postives = 126/148 (85.14%), Query Frame = 0


Query: 40  GGDEAAPTSVAP--VISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQ 99
           GG  A   +  P   +SRYESQKRRDW TF QYLRN RPPL +++C+ +HV+EFLRYLDQ
Sbjct: 14  GGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQ 73

Query: 100 FGKTKVHLNGCGFFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASG 159
           FGKTKVH +GC F+G+P P GPC CPLRQAWGSLDALIGRLRAAYEE+GG+ ++NPFA+ 
Sbjct: 74  FGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAAR 133

Query: 160 AIRVYLREVRDSQSKARGIPYKKKKKKK 186
           A+R+YLREVRDSQ+KARGIPY+KKK+K+
Sbjct: 134 AVRIYLREVRDSQAKARGIPYEKKKRKR 161

[Close]

BLAST of PI0025354 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-58
Identity = 101/146 (69.18%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 40  GGDEAAPTSVAPVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFG 99
           GG   +P+S +P +SRYESQKRRDW TFGQYLRN RPPL++S+C+ +HVLEFL+Y+DQFG
Sbjct: 65  GGGGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFG 124

Query: 100 KTKVHLNGCGFFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAI 159
           KTKVH   C F+G P P  PC CPLRQAWGSLDALIGRLRAAYEENGG+ + NPF + A+
Sbjct: 125 KTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAV 184

Query: 160 RVYLREVRDSQSKARGIPYKKKKKKK 186
           R+YLREVR++Q++ARGI Y+KKK+KK
Sbjct: 185 RLYLREVRETQARARGISYEKKKRKK 210

[Close]

BLAST of PI0025354 vs. ExPASy TrEMBL
Match: A0A0A0L028 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G627230 PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.1e-98
Identity = 192/201 (95.52%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 1   MSSSKGKDVQEGSSSNSSSSSS-LIVVVDDHN-HQQQQQFEGGDE-AAPTSV---APVIS 60
           MSSSKGKDV EGSSSNSSSSSS LIVVVDDHN HQQQQQFE GDE AAPTS    APVIS
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQFERGDEQAAPTSSVVGAPVIS 60

Query: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEP 120
           RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEP
Sbjct: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEP 120

Query: 121 EPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR 180
           EPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR
Sbjct: 121 EPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR 180

Query: 181 GIPYKKKKKKKIPINTHQQGA 196
           GIPYKKKKKKKIPINTHQQGA
Sbjct: 181 GIPYKKKKKKKIPINTHQQGA 201

[Close]

BLAST of PI0025354 vs. ExPASy TrEMBL
Match: A0A1S3CJY2 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103501807 PE=3 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 3.9e-97
Identity = 188/202 (93.07%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 1   MSSSKGKDVQEGSSSNSSSSSS-LIVVVDDHNH------QQQQQFEGGDEAAPTSVAPVI 60
           MSSSKGKDV EGSSSNSSSSSS L+VVVDD NH      QQQQQFE GDEAAPT   PVI
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGDEAAPT---PVI 60

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE
Sbjct: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA
Sbjct: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180

Query: 181 RGIPYKKKKKKKIPINTHQQGA 196
           RGIPYKKKKKKKIPINTHQQGA
Sbjct: 181 RGIPYKKKKKKKIPINTHQQGA 199

[Close]

BLAST of PI0025354 vs. ExPASy TrEMBL
Match: A0A5D3DWV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001030 PE=3 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.1e-96
Identity = 187/201 (93.03%), Postives = 188/201 (93.53%), Query Frame = 0


Query: 1   MSSSKGKDVQEGSSSNSSSSSS-LIVVVDDHNH------QQQQQFEGGDEAAPTSVAPVI 60
           MSSSKGKDV EGSSSNSSSSSS L+VVVDD NH      QQQQQFE GDEAAPT   PVI
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGDEAAPT---PVI 60

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE
Sbjct: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA
Sbjct: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180

Query: 181 RGIPYKKKKKKKIPINTHQQG 195
           RGIPYKKKKKKKIPINTHQQG
Sbjct: 181 RGIPYKKKKKKKIPINTHQQG 198

[Close]

BLAST of PI0025354 vs. ExPASy TrEMBL
Match: A0A6J1FB04 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111443674 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.5e-85
Identity = 163/195 (83.59%), Postives = 174/195 (89.23%), Query Frame = 0


Query: 1   MSSSKGKDVQEGSSSNSSSSSSLIVVVDDHNHQQQQQFEGGDEAAPTSVAPVISRYESQK 60
           MS+SKG DV EGSSSNSSSSSSL+ V++D N           + A T+VAPV SRYESQK
Sbjct: 33  MSTSKGNDVGEGSSSNSSSSSSLVAVINDRN-----------QPAATAVAPV-SRYESQK 92

Query: 61  RRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEPAGPC 120
           RRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGCGFFG+PEP GPC
Sbjct: 93  RRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPC 152

Query: 121 TCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYKK 180
           TCPL+QAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSKARGIPYKK
Sbjct: 153 TCPLKQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKK 212

Query: 181 KKKKKIPINTHQQGA 196
           KKKKKIP +THQ GA
Sbjct: 213 KKKKKIPTHTHQPGA 215

[Close]

BLAST of PI0025354 vs. ExPASy TrEMBL
Match: A0A6J1IH94 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111476929 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.9e-83
Identity = 160/195 (82.05%), Postives = 171/195 (87.69%), Query Frame = 0


Query: 1   MSSSKGKDVQEGSSSNSSSSSSLIVVVDDHNHQQQQQFEGGDEAAPTSVAPVISRYESQK 60
           MS+SKG D  EGSSSNSSSSSS + V+DD N QQQQ           +VA  +SRYESQK
Sbjct: 38  MSTSKGNDFGEGSSSNSSSSSSFVAVIDDRNQQQQQ-----------AVAVPVSRYESQK 97

Query: 61  RRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEPAGPC 120
           RRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGCGFFG+PEP GPC
Sbjct: 98  RRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPC 157

Query: 121 TCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYKK 180
           TCPLRQAWGSLDALIGRLRAAYEENGG+SDTNPFASGAIRVYLRE++DSQSKARGIPY K
Sbjct: 158 TCPLRQAWGSLDALIGRLRAAYEENGGTSDTNPFASGAIRVYLRELKDSQSKARGIPY-K 217

Query: 181 KKKKKIPINTHQQGA 196
           KKKKKIP +THQ GA
Sbjct: 218 KKKKKIPSHTHQPGA 220

[Close]

BLAST of PI0025354 vs. NCBI nr
Match: XP_004146094.2 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativus] >KGN55073.1 hypothetical protein Csa_012765 [Cucumis sativus])

HSP 1 Score: 368.2 bits (944), Expect = 4.3e-98
Identity = 192/201 (95.52%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 1   MSSSKGKDVQEGSSSNSSSSSS-LIVVVDDHN-HQQQQQFEGGDE-AAPTSV---APVIS 60
           MSSSKGKDV EGSSSNSSSSSS LIVVVDDHN HQQQQQFE GDE AAPTS    APVIS
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQFERGDEQAAPTSSVVGAPVIS 60

Query: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEP 120
           RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEP
Sbjct: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEP 120

Query: 121 EPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR 180
           EPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR
Sbjct: 121 EPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR 180

Query: 181 GIPYKKKKKKKIPINTHQQGA 196
           GIPYKKKKKKKIPINTHQQGA
Sbjct: 181 GIPYKKKKKKKIPINTHQQGA 201

[Close]

BLAST of PI0025354 vs. NCBI nr
Match: XP_008463732.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo])

HSP 1 Score: 364.0 bits (933), Expect = 8.1e-97
Identity = 188/202 (93.07%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 1   MSSSKGKDVQEGSSSNSSSSSS-LIVVVDDHNH------QQQQQFEGGDEAAPTSVAPVI 60
           MSSSKGKDV EGSSSNSSSSSS L+VVVDD NH      QQQQQFE GDEAAPT   PVI
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGDEAAPT---PVI 60

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE
Sbjct: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA
Sbjct: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180

Query: 181 RGIPYKKKKKKKIPINTHQQGA 196
           RGIPYKKKKKKKIPINTHQQGA
Sbjct: 181 RGIPYKKKKKKKIPINTHQQGA 199

[Close]

BLAST of PI0025354 vs. NCBI nr
Match: KAA0066771.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa] >TYK27918.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 362.5 bits (929), Expect = 2.3e-96
Identity = 187/201 (93.03%), Postives = 188/201 (93.53%), Query Frame = 0


Query: 1   MSSSKGKDVQEGSSSNSSSSSS-LIVVVDDHNH------QQQQQFEGGDEAAPTSVAPVI 60
           MSSSKGKDV EGSSSNSSSSSS L+VVVDD NH      QQQQQFE GDEAAPT   PVI
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGDEAAPT---PVI 60

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE
Sbjct: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA
Sbjct: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180

Query: 181 RGIPYKKKKKKKIPINTHQQG 195
           RGIPYKKKKKKKIPINTHQQG
Sbjct: 181 RGIPYKKKKKKKIPINTHQQG 198

[Close]

BLAST of PI0025354 vs. NCBI nr
Match: XP_038896716.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida])

HSP 1 Score: 346.3 bits (887), Expect = 1.7e-91
Identity = 178/194 (91.75%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MSSSKGKDVQEGSSSNSSSSSSLIVVVDDHNHQQQQ-QFEGGDEAAPTSVAPVISRYESQ 60
           MSSSKGKDV EGSSSNSSSSSSLIVVVDDHN QQ Q Q E    AA T++APV SRYESQ
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSLIVVVDDHNQQQHQFQREEAAIAATTTIAPV-SRYESQ 60

Query: 61  KRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEPAGP 120
           KRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEP GP
Sbjct: 61  KRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEPPGP 120

Query: 121 CTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYK 180
           CTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYK
Sbjct: 121 CTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYK 180

Query: 181 KKKKKKIPINTHQQ 194
           KKKKKK PI THQQ
Sbjct: 181 KKKKKKNPITTHQQ 193

[Close]

BLAST of PI0025354 vs. NCBI nr
Match: XP_022937367.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 323.9 bits (829), Expect = 9.3e-85
Identity = 163/195 (83.59%), Postives = 174/195 (89.23%), Query Frame = 0


Query: 1   MSSSKGKDVQEGSSSNSSSSSSLIVVVDDHNHQQQQQFEGGDEAAPTSVAPVISRYESQK 60
           MS+SKG DV EGSSSNSSSSSSL+ V++D N           + A T+VAPV SRYESQK
Sbjct: 33  MSTSKGNDVGEGSSSNSSSSSSLVAVINDRN-----------QPAATAVAPV-SRYESQK 92

Query: 61  RRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEPAGPC 120
           RRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGCGFFG+PEP GPC
Sbjct: 93  RRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPC 152

Query: 121 TCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYKK 180
           TCPL+QAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSKARGIPYKK
Sbjct: 153 TCPLKQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKK 212

Query: 181 KKKKKIPINTHQQGA 196
           KKKKKIP +THQ GA
Sbjct: 213 KKKKKIPTHTHQPGA 215

[Close]

BLAST of PI0025354 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 238.0 bits (606), Expect = 6.2e-63
Identity = 109/132 (82.58%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 54  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 113
           SRYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVL+FLRYLDQFGKTKVH+ GC F+G+
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 114 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 173
           PEP  PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFASGAIRVYLREVR+ Q+KA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 174 RGIPYKKKKKKK 186
           RGIPYKKKKKKK
Sbjct: 144 RGIPYKKKKKKK 155

[Close]

BLAST of PI0025354 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 238.0 bits (606), Expect = 6.2e-63
Identity = 109/132 (82.58%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 54  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 113
           SRYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVL+FLRYLDQFGKTKVH+ GC F+G+
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 114 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 173
           PEP  PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFASGAIRVYLREVR+ Q+KA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 174 RGIPYKKKKKKK 186
           RGIPYKKKKKKK
Sbjct: 144 RGIPYKKKKKKK 155

[Close]

BLAST of PI0025354 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 231.9 bits (590), Expect = 4.5e-61
Identity = 117/191 (61.26%), Postives = 142/191 (74.35%), Query Frame = 0


Query: 3   SSKGKDVQEGSSSNSSSSSSLIVVVDDHNHQQQQQFEGGDEAAPTSVAPVISRYESQKRR 62
           S+KGK + EGSS                  Q Q Q +     +P +  P +SRYESQKRR
Sbjct: 5   SNKGKGIAEGSS----------------QPQSQPQPQPHQPQSPPN-PPALSRYESQKRR 64

Query: 63  DWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEPAGPCTC 122
           DW TF QYLRNQ+PP+ ISQC S+H+L+FL+YLDQFGKTKVH++GC FFG+ EPAG C C
Sbjct: 65  DWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNC 124

Query: 123 PLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYK--K 182
           PL+QAWGSLDALIGRLRAA+EENGG  + NPFA G IRV+LREVRDSQ+KARG+PYK  K
Sbjct: 125 PLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRK 178

Query: 183 KKKKKIPINTH 192
           K+KK+ P+ +H
Sbjct: 185 KRKKRNPMKSH 178

[Close]

BLAST of PI0025354 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 226.1 bits (575), Expect = 2.4e-59
Identity = 102/135 (75.56%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 53  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 112
           +SRYE+QKRRDW TFGQYLRN RPPL++S+C+ +HVLEFLRYLDQFGKTKVH + C FFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 113 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 172
            P P  PC CPLRQAWGSLDALIGRLRAA+EENGGS +TNPF + A+R+YLREVRDSQ+K
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 173 ARGIPYKKKKKKKIP 188
           ARGI Y+KKK+K+ P
Sbjct: 166 ARGISYEKKKRKRPP 180

[Close]

BLAST of PI0025354 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-58
Identity = 102/153 (66.67%), Postives = 127/153 (83.01%), Query Frame = 0


Query: 41  GDEAAPTSVA---PVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQ 100
           GD+  P+ V+      SRYESQKRRDW TF QYL+N +PPLA+S+C+ +HV+EFL+YLDQ
Sbjct: 14  GDDPGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQ 73

Query: 101 FGKTKVHLNGCGFFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASG 160
           FGKTKVH+  C +FG  +P  PC+CPL+QAWGSLDALIGRLRAAYEENGG  D+NPFA+ 
Sbjct: 74  FGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAAR 133

Query: 161 AIRVYLREVRDSQSKARGIPYKKKKKKKIPINT 191
           A+R+YLREVR+SQ+KARGIPY+KKK+K+ P  T
Sbjct: 134 AVRIYLREVRESQAKARGIPYEKKKRKRPPTVT 166

The following BLAST results are available for this feature:

BLAST of PI0025354 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	8.8e-62	82.58	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9ZVA0	6.3e-60	61.26	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XED8	4.1e-59	70.27	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	4.1e-59	70.27	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
A2XAV5	2.0e-58	69.18	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]

BLAST of PI0025354 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L028	2.1e-98	95.52	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G627230 PE=3 S...	[more]
A0A1S3CJY2	3.9e-97	93.07	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5D3DWV8	1.1e-96	93.03	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1FB04	4.5e-85	83.59	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1IH94	1.9e-83	82.05	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of PI0025354 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146094.2	4.3e-98	95.52	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativus] >KGN55073.1 hypoth...	[more]
XP_008463732.1	8.1e-97	93.07	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo]	[more]
KAA0066771.1	2.3e-96	93.03	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa] >TYK...	[more]
XP_038896716.1	1.7e-91	91.75	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida]	[more]
XP_022937367.1	9.3e-85	83.59	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]

BLAST of PI0025354 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	6.2e-63	82.58	Protein of unknown function (DUF640)	[more]
AT2G42610.2	6.2e-63	82.58	Protein of unknown function (DUF640)	[more]
AT1G78815.1	4.5e-61	61.26	Protein of unknown function (DUF640)	[more]
AT3G23290.2	2.4e-59	75.56	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.2e-58	66.67	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 50..168 e-value: 8.8E-62 score: 206.9
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 55..182 score: 75.326294
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..195
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 1..192
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 1..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025354.1	PI0025354.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus