PI0025311 (gene) Melon (PI 482460) v1

Overview


Name	PI0025311
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr09: 12836390 .. 12837767 (+)
RNA-Seq Expression	PI0025311
Synteny	PI0025311

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCGTTGTCGGGGAGCGACGGTAAGTAATTTGAAAAATTCTTTTAGGTTAGAATCTTTTCTTAGTTTCTTGATTCTATATTCAATTTCTAAAAAAAAATCTTTAAAAACCAAAAAGAGAGTTATTTTGTGAAATCTTTTTCTCTCCCCTACTTTGTATGTCCCGCTCTTCTAATCCTCACTTAGAATTTTTTGAAGACCTTAATAGGGAAGTGCGTAGAATTAGGAGAGAAAGGAGAGAAGAAATTAACCAAAATATTCCTCAAGAAAATCAAGAGCCTACCTTTGAAAACCAAAACCTTGAAAGACAAACCATGGGCCAAGTTAGAGAAAAGACTCTTAGAGAACTATCTGAACCTGATGAAGACCAAAGACCCCTATGTATAGTGATTCCCCCAACAACTCAACCCTTCGAGCTCAAACCTGGACTAATCCATCTTTTACCAATCTATAAGGGTAGCTCAGGTGAAGATCCTCATAAACACCTTAAGGATTTTCATATGGTTTGTGACTCTATGAAACCACACGGAGTTTCTGAAGAACAACTCAATCTTAGAGCCTTTCCATTTTCCTTAACTGATACAGCCAAACGTTGGCTTTATTACTTAGAACCAGGATCTATCACAACTTGGGGAGGTCTCAAAAAGAAATTCCTAGAAAAATTCTTTCCCGCTTCTAGAGCAAATAACATTAGGAAGGAAATCTATGGAATTAGGCAAGCTTTTGGGGAGTCTTTATCTGAATACTGGGAGCGCTTTAATGAGCTTTGCACTAGCTTTCCCCATCATCATATTTCTGACCCTTCTTTAATACAGTATTTTTATTCTGGACTACTAACCACGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCTTTAGCTGATAAGACTCCTACTGAAGCAAGAGAGCTAATATCACGGATGGCTGAAAATTCACAGAATTTTGGCAACAGAGCATCCGAGCTCGACAATTCATTGACAAATGAGGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTACCAAATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCAAGGAAATACTTACAACGCCAGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAACCCACGCAAGCAACTCCTACTTCAAACAATCAAGGTACAAATTTGGAGGATTTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAA

mRNA sequence

ATGGCGCCGTTGTCGGGGAGCGACGGTGGAAATGTGAAAGTTACCAAATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCAAGGAAATACTTACAACGCCAGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAACCCACGCAAGCAACTCCTACTTCAAACAATCAAGCAACAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAA

Coding sequence (CDS)

ATGGCGCCGTTGTCGGGGAGCGACGGTGGAAATGTGAAAGTTACCAAATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCAAGGAAATACTTACAACGCCAGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAACCCACGCAAGCAACTCCTACTTCAAACAATCAAGCAACAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAA

Protein sequence

MAPLSGSDGGNVKVTKCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNASWRDNPNLRWGNNNQQPTQATPTSNNQATNVSINKCNKQVRRQR

Homology

[Close]

BLAST of PI0025311 vs. ExPASy TrEMBL
Match: E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.0e-23
Identity = 51/75 (68.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 9   GGNVKVTKCG---LIGHPNDKCPDLVEEANVIRKYDPQGNTYNASWRDNPNLRWGNNNQQ 68
           G  +KVTKCG   L+GHPNDKCP+++E+ N++RKYDP GNTYN+ WRDNPNLRWGN+NQ+
Sbjct: 67  GTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNPNLRWGNDNQK 126

Query: 69  PTQATPTSNNQATNV 81
            TQA PTS+NQ TN+
Sbjct: 127 HTQAPPTSSNQGTNL 141

[Close]

BLAST of PI0025311 vs. ExPASy TrEMBL
Match: A0A5A7UAL2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001750 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.0e-23
Identity = 51/75 (68.00%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 9   GGNVKVTKCG---LIGHPNDKCPDLVEEANVIRKYDPQGNTYNASWRDNPNLRWGNNNQQ 68
           G  +KVTKCG   L+GHPNDKCP+++E+ N++RKYDP GNTYN  WRDNPNLRWGN+NQ+
Sbjct: 43  GTPLKVTKCGVCCLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNLGWRDNPNLRWGNDNQK 102

Query: 69  PTQATPTSNNQATNV 81
            TQA PTS+NQ TN+
Sbjct: 103 HTQAPPTSSNQGTNL 117

[Close]

BLAST of PI0025311 vs. ExPASy TrEMBL
Match: A0A5A7ULC7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29G00020 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.2e-23
Identity = 49/77 (63.64%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 9   GGNVKVTKCGL---IGHPNDKCPDLVEEANVIRKYDPQGNTYNASWRDNPNLRWGNNNQQ 68
           G  +KVTKCG+   +GHPNDKCP+++E+ N+++KYDP GNTYN+ WRDNPNLRWGN+NQ 
Sbjct: 204 GTPIKVTKCGVFGFVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQT 263

Query: 69  PTQATPTSNNQATNVSI 83
            TQA PTS+NQ TN+ +
Sbjct: 264 HTQAPPTSSNQGTNLEV 280

[Close]

BLAST of PI0025311 vs. ExPASy TrEMBL
Match: A0A5D3DCG3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold860G00100 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.8e-23
Identity = 50/75 (66.67%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 9  GGNVKVTK---CGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNASWRDNPNLRWGNNNQQ 68
          G  +KVTK   CGL+GHPNDKCP+++E+ N+++KYDP GNTYN+ WRDNPNLRWGN+NQ+
Sbjct: 11 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69 PTQATPTSNNQATNV 81
           TQA PTS+NQ TN+
Sbjct: 71 HTQAPPTSSNQGTNL 85

[Close]

BLAST of PI0025311 vs. ExPASy TrEMBL
Match: A0A5A7UID2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001450 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.8e-23
Identity = 49/72 (68.06%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 12  VKVTK---CGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNASWRDNPNLRWGNNNQQPTQ 71
           +KVTK   CGL+GHPNDKCP+++E+ N++R+YDP GNTYN+ WRDNPNLRWGN+NQ+ TQ
Sbjct: 72  LKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPYGNTYNSGWRDNPNLRWGNDNQKHTQ 131

Query: 72  ATPTSNNQATNV 81
           A PTS+NQ TN+
Sbjct: 132 APPTSSNQGTNL 143

[Close]

BLAST of PI0025311 vs. NCBI nr
Match: ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 117.5 bits (293), Expect = 6.3e-23
Identity = 51/75 (68.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 9   GGNVKVTKCG---LIGHPNDKCPDLVEEANVIRKYDPQGNTYNASWRDNPNLRWGNNNQQ 68
           G  +KVTKCG   L+GHPNDKCP+++E+ N++RKYDP GNTYN+ WRDNPNLRWGN+NQ+
Sbjct: 67  GTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNPNLRWGNDNQK 126

Query: 69  PTQATPTSNNQATNV 81
            TQA PTS+NQ TN+
Sbjct: 127 HTQAPPTSSNQGTNL 141

[Close]

BLAST of PI0025311 vs. NCBI nr
Match: KAA0050529.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 8.2e-23
Identity = 51/75 (68.00%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 9   GGNVKVTKCG---LIGHPNDKCPDLVEEANVIRKYDPQGNTYNASWRDNPNLRWGNNNQQ 68
           G  +KVTKCG   L+GHPNDKCP+++E+ N++RKYDP GNTYN  WRDNPNLRWGN+NQ+
Sbjct: 43  GTPLKVTKCGVCCLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNLGWRDNPNLRWGNDNQK 102

Query: 69  PTQATPTSNNQATNV 81
            TQA PTS+NQ TN+
Sbjct: 103 HTQAPPTSSNQGTNL 117

[Close]

BLAST of PI0025311 vs. NCBI nr
Match: KAA0056713.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 49/77 (63.64%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 9   GGNVKVTKCGL---IGHPNDKCPDLVEEANVIRKYDPQGNTYNASWRDNPNLRWGNNNQQ 68
           G  +KVTKCG+   +GHPNDKCP+++E+ N+++KYDP GNTYN+ WRDNPNLRWGN+NQ 
Sbjct: 204 GTPIKVTKCGVFGFVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQT 263

Query: 69  PTQATPTSNNQATNVSI 83
            TQA PTS+NQ TN+ +
Sbjct: 264 HTQAPPTSSNQGTNLEV 280

[Close]

BLAST of PI0025311 vs. NCBI nr
Match: XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-22
Identity = 50/75 (66.67%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 9  GGNVKVTK---CGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNASWRDNPNLRWGNNNQQ 68
          G  +KVTK   CGL+GHPNDKCP+++E+ N+++KYDP GNTYN+ WRDNPNLRWGN+NQ+
Sbjct: 11 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69 PTQATPTSNNQATNV 81
           TQA PTS+NQ TN+
Sbjct: 71 HTQAPPTSSNQGTNL 85

[Close]

BLAST of PI0025311 vs. NCBI nr
Match: KAA0051761.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-22
Identity = 50/75 (66.67%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 9  GGNVKVTK---CGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNASWRDNPNLRWGNNNQQ 68
          G  +KVTK   CGL+GHPNDKCP+++E+ N+++KYDP GNTYN+ WRDNPNLRWGN+NQ+
Sbjct: 11 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69 PTQATPTSNNQATNV 81
           TQA PTS+NQ TN+
Sbjct: 71 HTQAPPTSSNQGTNL 85

The following BLAST results are available for this feature:

BLAST of PI0025311 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025311 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GBZ4	3.0e-23	68.00	Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5A7UAL2	4.0e-23	68.00	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7ULC7	5.2e-23	63.64	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DCG3	6.8e-23	66.67	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UID2	6.8e-23	68.06	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of PI0025311 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33993.1	6.3e-23	68.00	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
KAA0050529.1	8.2e-23	68.00	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0056713.1	1.1e-22	63.64	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
XP_016902871.1	1.4e-22	66.67	PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]	[more]
KAA0051761.1	1.4e-22	66.67	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotranspos...	[more]

BLAST of PI0025311 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025311.1	PI0025311.1	mRNA