PI0025174 (gene) Melon (PI 482460) v1

Overview


Name	PI0025174
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr06: 14527700 .. 14529189 (+)
RNA-Seq Expression	PI0025174
Synteny	PI0025174

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCGGTCTTCCAACCAAGAACTTCACTTTTTCGAAGACCTAAATAGGGAAGTGCGTAGGATTAGGAGAGAAAGGAGAGAAGAAACCATTCATAATTTTCCTCGAGATCCAATAGAAAACCTAGAGCCTAATCTAGAGCATCCAAACCTTGATAGAGAAAACATGGGGCAAGTTAGAGAAAAAACCTTAAGAGAGCTTTCCGAGCCCGATGAGGACCAAAGACCCCTCTGTATAGTAATTCCCCCAACCACTCAACCCTTTGAACTCAAACCCGGACTAATTCACCTATTACCAATCTATAAGGATAGTTTAGGAGAGGACCCCCATAAACATTTTAAGGACTTTCACATGGTTTGTGACTCTATGAGACTGCACGGAGTCTCAGAGGAGCAACTTAATTTGAGAGCCTTCCCCTTTTCTTTAACTGACACAGCCAAAAGATGGCTTTACTATCTAGAGCCAGGGTCCATCACAACTTGGGGTAGCCTTAAGAAAAAATTCATAGAAAAATTCTTTCCCGCCTCTAGAGCAAATAATATTAGGAAAGAGATATATGGAACAGGCAAGCTTTTTGGGAGTCTTTGTCTGAATACTGGGAAAGGTTTAAGGAACTTTGCGTTAGTTTCCCCCATCACCATATTTCAGACCCATCACTAATCCAATATTTCTATTCTGGACTACTAACTATGGATAGAAATACAGTAGACGCTGCGGCAGGAGGTGCATTAGCTGACAAAACCCCTACTGAGGCGAGAGAGCTCATTTCAAGGATGACAGAAAATTCACAGAACTTTGGAAATAGGACATCCGAGCTCGACAATTCATTAACTAAGGAGGTAAGTGAACTTAAATTACAAATGCTTAATATGACTACGCTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAGGTTGCTAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTACCCTGACTTAGTTGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCATAGCAACACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGAGAAACGACAACCAAAGACCCTCACAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTTTTACTACTAATACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATATGACCAATGCAATAAGCAAGCTAGAAGGTAAAGGCAAACTTCTGGCTCAGCCAGATCATGCTAATGTAAGTGCCATCTCACTTAGAAGCGGTAAGATTCTGGAAACCCCTTTAAGTGAAGAGAAGGTAACTTCTACCCCTATCCTTCTAGAAAATACAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCTAGCTCTAAAGGTAAATCTCATATTTTAGATTATTCTCCATACATCCCTGGTTCTCAAAAATCACTTCGTAAATATGGGATTAGGTTCTAA

mRNA sequence

ATGACCCGGTCTTCCAACCAAGAACTTCACTTTTTCGAAGACCTAAATAGGGAAGTGCGTAGGATTAGGAGAGAAAGGAGAGAAGAAACCATTCATAATTTTCCTCGAGATCCAATAGAAAACCTAGAGCCTAATCTAGAGCATCCAAACCTTGATAGAGAAAACATGGGGCAAGTTAGAGAAAAAACCTTAAGAGAGCTTTCCGAGCCCGATGAGGACCAAAGACCCCTCTGTATAGTAATTCCCCCAACCACTCAACCCTTTGAACTCAAACCCGGACTAATTCACCTATTACCAATCTATAAGGATAGTTTAGGAGAGGACCCCCATAAACATTTTAAGGACTTTCACATGGTTTGTGACTCTATGAGACTGCACGGAGTCTCAGAGGAGCAACTTAATTTGAGAGCCTTCCCCTTTTCTTTAACTGACACAGCCAAAAGATGGCTTTACTATCTAGAGCCAGGGTCCATCACAACTTGGGGTAGCCTTAAGAAAAAATTCATAGAAAAATTCTTTCCCGCCTCTAGAGCAAATAATATTAGGAAAGAGATATATGGAACAGGCAAGCTTTTTGGGAGTCTTTGTCTGAATACTGGGAAAGACGCTGCGGCAGGAGGTGCATTAGCTGACAAAACCCCTACTGAGGCGAGAGAGCTCATTTCAAGGATGACAGAAAATTCACAGAACTTTGGAAATAGGACATCCGAGCTCGACAATTCATTAACTAAGGAGGTAAGTGAACTTAAATTACAAATGCTTAATATGACTACGCTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAGGTTGCTAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTACCCTGACTTAGTTGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCATAGCAACACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGAGAAACGACAACCAAAGACCCTCACAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTTTTACTACTAATACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATATGACCAATGCAATAAGCAAGCTAGAAGGTAAAGGCAAACTTCTGGCTCAGCCAGATCATGCTAATGTAAGTGCCATCTCACTTAGAAGCGGTAAGATTCTGGAAACCCCTTTAAGTGAAGAGAAGGTAACTTCTACCCCTATCCTTCTAGAAAATACAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCTAGCTCTAAAGGTAAATCTCATATTTTAGATTATTCTCCATACATCCCTGGTTCTCAAAAATCACTTCGTAAATATGGGATTAGGTTCTAA

Coding sequence (CDS)

ATGACCCGGTCTTCCAACCAAGAACTTCACTTTTTCGAAGACCTAAATAGGGAAGTGCGTAGGATTAGGAGAGAAAGGAGAGAAGAAACCATTCATAATTTTCCTCGAGATCCAATAGAAAACCTAGAGCCTAATCTAGAGCATCCAAACCTTGATAGAGAAAACATGGGGCAAGTTAGAGAAAAAACCTTAAGAGAGCTTTCCGAGCCCGATGAGGACCAAAGACCCCTCTGTATAGTAATTCCCCCAACCACTCAACCCTTTGAACTCAAACCCGGACTAATTCACCTATTACCAATCTATAAGGATAGTTTAGGAGAGGACCCCCATAAACATTTTAAGGACTTTCACATGGTTTGTGACTCTATGAGACTGCACGGAGTCTCAGAGGAGCAACTTAATTTGAGAGCCTTCCCCTTTTCTTTAACTGACACAGCCAAAAGATGGCTTTACTATCTAGAGCCAGGGTCCATCACAACTTGGGGTAGCCTTAAGAAAAAATTCATAGAAAAATTCTTTCCCGCCTCTAGAGCAAATAATATTAGGAAAGAGATATATGGAACAGGCAAGCTTTTTGGGAGTCTTTGTCTGAATACTGGGAAAGACGCTGCGGCAGGAGGTGCATTAGCTGACAAAACCCCTACTGAGGCGAGAGAGCTCATTTCAAGGATGACAGAAAATTCACAGAACTTTGGAAATAGGACATCCGAGCTCGACAATTCATTAACTAAGGAGGTAAGTGAACTTAAATTACAAATGCTTAATATGACTACGCTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAGGTTGCTAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTACCCTGACTTAGTTGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCATAGCAACACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGAGAAACGACAACCAAAGACCCTCACAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTTTTACTACTAATACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATATGACCAATGCAATAAGCAAGCTAGAAGGTAAAGGCAAACTTCTGGCTCAGCCAGATCATGCTAATGTAAGTGCCATCTCACTTAGAAGCGGTAAGATTCTGGAAACCCCTTTAAGTGAAGAGAAGGTAACTTCTACCCCTATCCTTCTAGAAAATACAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCTAGCTCTAAAGGTAAATCTCATATTTTAGATTATTCTCCATACATCCCTGGTTCTCAAAAATCACTTCGTAAATATGGGATTAGGTTCTAA

Protein sequence

MTRSSNQELHFFEDLNREVRRIRRERREETIHNFPRDPIENLEPNLEHPNLDRENMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHFKDFHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFFPASRANNIRKEIYGTGKLFGSLCLNTGKDAAAGGALADKTPTEARELISRMTENSQNFGNRTSELDNSLTKEVSELKLQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQNEMKQQMSHMTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPLSEEKVTSTPILLENTDEKKEEKLETSSLPSSSKGKSHILDYSPYIPGSQKSLRKYGIRF

Homology

[Close]

BLAST of PI0025174 vs. ExPASy TrEMBL
Match: A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 4.8e-170
Identity = 327/492 (66.46%), Postives = 379/492 (77.03%), Query Frame = 0


Query: 1   MTRSSNQELHFFEDLNREVRRIRRERREETIHNFP----RDPIENLEPNLE---HPNLDR 60
           MTRSSN E  +FEDLN+EVRRIRRERREE  +N P    ++P+  LEP+L+    PNL R
Sbjct: 1   MTRSSNLEFPYFEDLNKEVRRIRRERREE--NNIPNLSNQEPLRGLEPSLDSPLDPNLGR 60

Query: 61  ENMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHF 120
            NMG+VREKT+R+L E DEDQRPLCIVI  TTQPFELKP LIHLLPI+K + GEDPHKH 
Sbjct: 61  GNMGEVREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHL 120

Query: 121 KDFHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFF 180
           KDFHMVCDSMR HG+SEEQLNLRAFPFSLTD AKRWLYYLEPGSITTWGSLKKKF+EKFF
Sbjct: 121 KDFHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFF 180

Query: 181 PASRANNIRKEIYGTGKLFG-----------SLCLN------------------------ 240
           PASR NNIRKEIYG  + FG            LC N                        
Sbjct: 181 PASRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDR 240

Query: 241 TGKDAAAGGALADKTPTEARELISRMTENSQNFGNRTSELDNSLTKEVSELKLQMLNMTT 300
              DAAAGGALA+K PTEARELISRM +NSQ FGNR SEL+NSLTKEVSELK QMLNMTT
Sbjct: 241 NTVDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTT 300

Query: 301 LLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEANVIRKYDPHSNTYNAGWRDNPNLR 360
           LLTSFVQG  +KV KC VCGLVGHPNDK P+++EE N+++KYDP+SNTYN GWRDNP LR
Sbjct: 301 LLTSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILR 360

Query: 361 WRNDNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQNEMKQQMSHMTNAISKLEGKGKL 420
           W NDNQ+ +QA ++S+NQ TNL+D++KA  TNT+SFQ EMKQQM+ +T  ISK++GKGKL
Sbjct: 361 WGNDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKL 420

Query: 421 LAQPDHANVSAISLRSGKILETP-LSEEKVTSTPILLENTDEKKEEKLETS-SLPSSSKG 449
            AQP+HANVS ISLRSGKIL+TP   E+KVTS P+ L + +E KEEK+ET+ SL +    
Sbjct: 421 PAQPNHANVSVISLRSGKILDTPSTKEKKVTSIPLPLNSKNESKEEKVETNPSLSNPKND 480

[Close]

BLAST of PI0025174 vs. ExPASy TrEMBL
Match: A0A5A7VQ60 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1704G00030 PE=4 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 2.1e-141
Identity = 289/458 (63.10%), Postives = 338/458 (73.80%), Query Frame = 0


Query: 1   MTRSSNQELHFFEDLNREVRRIRRERREETIHNFP----RDPIENLEPNLE---HPNLDR 60
           MTRSSN E  +FEDLNREVRRIRRERREE  ++ P    ++P+  LEP+L+    PNL R
Sbjct: 1   MTRSSNLEFPYFEDLNREVRRIRRERREE--NSIPSLSNQEPLRGLEPSLDSPLDPNLGR 60

Query: 61  ENMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHF 120
            NM +VREKTLREL+E DE+QRPLCIVIPPTTQPFELKPGLIHLLPI+K S GEDPHKH 
Sbjct: 61  GNMSEVREKTLRELAELDENQRPLCIVIPPTTQPFELKPGLIHLLPIFKGSPGEDPHKHL 120

Query: 121 KDFHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFF 180
           KDFHMV DSMR HG+SEEQLNLRAF F L                               
Sbjct: 121 KDFHMVFDSMRPHGISEEQLNLRAFLFPL------------------------------- 180

Query: 181 PASRANNIRKEIYGTGKLFGSLCLNTGKDAAAGGALADKTPTEARELISRMTENSQNFGN 240
              R N +                    DAA G ALADKTPTEARELISRM +N Q+FGN
Sbjct: 181 ---RMNTV--------------------DAAVGRALADKTPTEARELISRMAKNFQSFGN 240

Query: 241 RTSELDNSLTKEVSELKLQMLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVE 300
           R SE DNSLTKEVSELK QMLNM TTLLTSFVQG  +KV KCGVCGLVGH N+K P+++E
Sbjct: 241 RASEFDNSLTKEVSELKSQMLNMTTTLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIE 300

Query: 301 EANVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKAFTTNTI 360
           + N++R+YDPHSNTYN+GWRDNPNLRW NDNQ+ +QA S+S+NQGTNLED++KA  TNT+
Sbjct: 301 DVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTL 360

Query: 361 SFQNEMKQQMSHMTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPLS-EEKVTSTP 420
           SFQ EMKQQM+ +T AISK++GKGKL AQ DHANVSAISLRSGKIL+TP + E+KVTS P
Sbjct: 361 SFQQEMKQQMTQLTTAISKMDGKGKLPAQLDHANVSAISLRSGKILDTPTTKEKKVTSKP 402

Query: 421 ILLENTDEKKEEKLETSSLPSSSKG-KSHILDYSPYIP 449
           + L + +E KEEK+ET+  PS+SK  KS + D++PYIP
Sbjct: 421 LPLNSKNESKEEKVETNPSPSNSKNDKSPLNDFTPYIP 402

[Close]

BLAST of PI0025174 vs. ExPASy TrEMBL
Match: A0A5D3C1D3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00200 PE=4 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 4.4e-131
Identity = 259/429 (60.37%), Postives = 301/429 (70.16%), Query Frame = 0


Query: 26  RREETIHN-FPRDPIENLEPNLE---HPNLDRENMGQVREKTLRELSEPDEDQRPLCIVI 85
           R E  I N + + P+  LEP+L+    PNL R NMG+VREK LREL EPDEDQRPLCI+I
Sbjct: 2   REENNILNLYNQQPLRGLEPSLDSPLDPNLGRGNMGEVREKNLRELVEPDEDQRPLCIII 61

Query: 86  PPTTQPFELKPGLIHLLPIYKDSLGEDPHKHFKDFHMVCDSMRLHGVSEEQLNLRAFPFS 145
           PPTTQPFELK GLIHLLPI+K S GEDPHKH KDF+MVCDSMRLHG+S+EQLNLRAFPFS
Sbjct: 62  PPTTQPFELKSGLIHLLPIFKGSFGEDPHKHHKDFYMVCDSMRLHGISKEQLNLRAFPFS 121

Query: 146 LTDTAKRWLYYLEPGSITTWGSLKKKFIEKFFPASRANNIRKEIYGTGKLFGSLCLNTGK 205
           L D AKRWLYYLEPGSITTW                                        
Sbjct: 122 LMDVAKRWLYYLEPGSITTW---------------------------------------- 181

Query: 206 DAAAGGALADKTPTEARELISRMTENSQNFGNRTSELDNSLTKEVSELKLQMLNMTTLLT 265
           DAAAGGALADKTP EARELISRMTE SQ+FGNR SELDNSLTK                 
Sbjct: 182 DAAAGGALADKTPIEARELISRMTEISQSFGNRASELDNSLTK----------------- 241

Query: 266 SFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWRN 325
                       CGVCGLVGHPNDK P+++ + N+++KYDPH NTYN+GWRDNPNLRW N
Sbjct: 242 -----------VCGVCGLVGHPNDKCPEVISDVNIVQKYDPHGNTYNSGWRDNPNLRWGN 301

Query: 326 DNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQNEMKQQMSHMTNAISKLEGKGKLLAQ 385
           DNQ+ +QA  +S+NQGTNLED++KA  TNT+SFQ EMKQQM+ +T AISK++GKGKL  Q
Sbjct: 302 DNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLTDQ 361

Query: 386 PDHANVSAISLRSGKILET-PLSEEKVTSTPILLENTDEKKEEKLETSSLPSSSKG-KSH 445
           P+HANVS ISLRSGKIL+T    E+KVTS P+ L + +E KEEK+ET+  PS SK  K  
Sbjct: 362 PNHANVSTISLRSGKILDTLTTKEKKVTSKPLPLNSKNESKEEKIETNPSPSKSKNDKPP 362

Query: 446 ILDYSPYIP 449
           + D++PYIP
Sbjct: 422 LNDFTPYIP 362

[Close]

BLAST of PI0025174 vs. ExPASy TrEMBL
Match: A0A5A7V1C6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003360 PE=4 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 4.1e-129
Identity = 240/351 (68.38%), Postives = 272/351 (77.49%), Query Frame = 0


Query: 56  MGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHFKD 115
           MG+VREKTLREL EPDEDQRPLC+VIPPTTQPFELK GLIHLLPI+K S GEDP+KH KD
Sbjct: 1   MGEVREKTLRELVEPDEDQRPLCVVIPPTTQPFELKLGLIHLLPIFKGSSGEDPYKHLKD 60

Query: 116 FHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFFPA 175
           FHMVCDSMR HG+SEEQLNLRAFPFSLTD  KRWLYYLEP                    
Sbjct: 61  FHMVCDSMRPHGISEEQLNLRAFPFSLTDVVKRWLYYLEP-------------------- 120

Query: 176 SRANNIRKEIYGTGKLFGSLCLNTGKDAAAGGALADKTPTEARELISRMTENSQNFGNRT 235
                                     DA AG ALADKTPT+A ELISRM ENSQ+FGNR 
Sbjct: 121 -------------------------VDAVAGEALADKTPTKAGELISRMAENSQSFGNRA 180

Query: 236 SELDNSLTKEVSELKLQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEAN 295
            ELDNSLTKEVSELK QMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDK P+++E+ N
Sbjct: 181 LELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVN 240

Query: 296 VIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQ 355
           ++R+YDPH NTYN+ WRDNPNLRW NDNQ+ +QA S+S+NQGTNL+D++KA  TNT+SFQ
Sbjct: 241 IVRRYDPHGNTYNSRWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLKDIIKALVTNTLSFQ 300

Query: 356 NEMKQQMSHMTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPLSEEK 407
            EMKQQM+ +T AISK++GKGKLLAQP+H NVSAI LRSGKIL+TP ++EK
Sbjct: 301 QEMKQQMTQLTTAISKMDGKGKLLAQPEHDNVSAILLRSGKILDTPTTKEK 306

[Close]

BLAST of PI0025174 vs. ExPASy TrEMBL
Match: A0A5D3DIP6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00340 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 8.6e-127
Identity = 274/490 (55.92%), Postives = 317/490 (64.69%), Query Frame = 0


Query: 1   MTRSSNQELHFFEDLNREVRRIRRERREE-TIHNFP-RDPIENLEPNLE---HPNLDREN 60
           MTRSSN +  +FEDLNREVRRIRRERREE +IHN   ++P+  LEP+L+    PNL R N
Sbjct: 1   MTRSSNLKFSYFEDLNREVRRIRRERREENSIHNLSNQEPLRGLEPSLDSPLDPNLGRGN 60

Query: 61  MGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHFKD 120
           +G+VREKTLREL+EPDEDQRPLCIVIP TTQPFELK GLIHLL I+K S GED HKH KD
Sbjct: 61  LGEVREKTLRELAEPDEDQRPLCIVIPSTTQPFELKSGLIHLLLIFKGSFGEDLHKHLKD 120

Query: 121 FHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFFPA 180
           FHMVC SMR H +SEEQLNLRAFPF LTD AKRWLYYLEP  ITTW SLKKKF+EKFFPA
Sbjct: 121 FHMVCGSMRPHSISEEQLNLRAFPFFLTDVAKRWLYYLEPDFITTWSSLKKKFLEKFFPA 180

Query: 181 SRANNIRKEIYGTGKLFG--------------------------------SLCLNTGK-- 240
           SRANNIRKEIYG  + FG                                S  L++ +  
Sbjct: 181 SRANNIRKEIYGIRQAFGESLSEYWERSKELYASFPHHHISDPSLIQYFYSGLLSSDRNT 240

Query: 241 -DAAAGGALADKTPTEARELISRMTENSQNFGNRTSELDNSLTKEVSELKLQMLNMTTLL 300
            D AAGGALADKT  E RELISRM ENSQ+FGNR SELDNSLTKEVS             
Sbjct: 241 VDTAAGGALADKTLIEVRELISRMVENSQSFGNRASELDNSLTKEVST------------ 300

Query: 301 TSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWR 360
                   +KV KCGVCGLVGHPNDK P+++E+ N++++YDP                  
Sbjct: 301 -------PLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDP------------------ 360

Query: 361 NDNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQNEMKQQMSHMTNAISKLEGKGKLLA 420
                                                MKQQ++ +T AISK+EGKGKLLA
Sbjct: 361 ------------------------------------TMKQQITQLTTAISKMEGKGKLLA 417

Query: 421 QPDHANVSAISLRSGKILETPLS-EEKVTSTPILLENTDEKKEEKLETSSLPSSSKG-KS 449
           Q DHANVSAISLRSGKIL TP + E+KVTS P+ L + +E KEEK+ET+  PS+SK  KS
Sbjct: 421 QQDHANVSAISLRSGKILNTPTTKEKKVTSEPLPLNSKNESKEEKVETNPSPSNSKNEKS 417

[Close]

BLAST of PI0025174 vs. NCBI nr
Match: KAA0031967.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 607.4 bits (1565), Expect = 9.9e-170
Identity = 327/492 (66.46%), Postives = 379/492 (77.03%), Query Frame = 0


Query: 1   MTRSSNQELHFFEDLNREVRRIRRERREETIHNFP----RDPIENLEPNLE---HPNLDR 60
           MTRSSN E  +FEDLN+EVRRIRRERREE  +N P    ++P+  LEP+L+    PNL R
Sbjct: 1   MTRSSNLEFPYFEDLNKEVRRIRRERREE--NNIPNLSNQEPLRGLEPSLDSPLDPNLGR 60

Query: 61  ENMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHF 120
            NMG+VREKT+R+L E DEDQRPLCIVI  TTQPFELKP LIHLLPI+K + GEDPHKH 
Sbjct: 61  GNMGEVREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHL 120

Query: 121 KDFHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFF 180
           KDFHMVCDSMR HG+SEEQLNLRAFPFSLTD AKRWLYYLEPGSITTWGSLKKKF+EKFF
Sbjct: 121 KDFHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFF 180

Query: 181 PASRANNIRKEIYGTGKLFG-----------SLCLN------------------------ 240
           PASR NNIRKEIYG  + FG            LC N                        
Sbjct: 181 PASRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDR 240

Query: 241 TGKDAAAGGALADKTPTEARELISRMTENSQNFGNRTSELDNSLTKEVSELKLQMLNMTT 300
              DAAAGGALA+K PTEARELISRM +NSQ FGNR SEL+NSLTKEVSELK QMLNMTT
Sbjct: 241 NTVDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTT 300

Query: 301 LLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEANVIRKYDPHSNTYNAGWRDNPNLR 360
           LLTSFVQG  +KV KC VCGLVGHPNDK P+++EE N+++KYDP+SNTYN GWRDNP LR
Sbjct: 301 LLTSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILR 360

Query: 361 WRNDNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQNEMKQQMSHMTNAISKLEGKGKL 420
           W NDNQ+ +QA ++S+NQ TNL+D++KA  TNT+SFQ EMKQQM+ +T  ISK++GKGKL
Sbjct: 361 WGNDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKL 420

Query: 421 LAQPDHANVSAISLRSGKILETP-LSEEKVTSTPILLENTDEKKEEKLETS-SLPSSSKG 449
            AQP+HANVS ISLRSGKIL+TP   E+KVTS P+ L + +E KEEK+ET+ SL +    
Sbjct: 421 PAQPNHANVSVISLRSGKILDTPSTKEKKVTSIPLPLNSKNESKEEKVETNPSLSNPKND 480

[Close]

BLAST of PI0025174 vs. NCBI nr
Match: KAA0067359.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 512.3 bits (1318), Expect = 4.3e-141
Identity = 289/458 (63.10%), Postives = 338/458 (73.80%), Query Frame = 0


Query: 1   MTRSSNQELHFFEDLNREVRRIRRERREETIHNFP----RDPIENLEPNLE---HPNLDR 60
           MTRSSN E  +FEDLNREVRRIRRERREE  ++ P    ++P+  LEP+L+    PNL R
Sbjct: 1   MTRSSNLEFPYFEDLNREVRRIRRERREE--NSIPSLSNQEPLRGLEPSLDSPLDPNLGR 60

Query: 61  ENMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHF 120
            NM +VREKTLREL+E DE+QRPLCIVIPPTTQPFELKPGLIHLLPI+K S GEDPHKH 
Sbjct: 61  GNMSEVREKTLRELAELDENQRPLCIVIPPTTQPFELKPGLIHLLPIFKGSPGEDPHKHL 120

Query: 121 KDFHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFF 180
           KDFHMV DSMR HG+SEEQLNLRAF F L                               
Sbjct: 121 KDFHMVFDSMRPHGISEEQLNLRAFLFPL------------------------------- 180

Query: 181 PASRANNIRKEIYGTGKLFGSLCLNTGKDAAAGGALADKTPTEARELISRMTENSQNFGN 240
              R N +                    DAA G ALADKTPTEARELISRM +N Q+FGN
Sbjct: 181 ---RMNTV--------------------DAAVGRALADKTPTEARELISRMAKNFQSFGN 240

Query: 241 RTSELDNSLTKEVSELKLQMLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVE 300
           R SE DNSLTKEVSELK QMLNM TTLLTSFVQG  +KV KCGVCGLVGH N+K P+++E
Sbjct: 241 RASEFDNSLTKEVSELKSQMLNMTTTLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIE 300

Query: 301 EANVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKAFTTNTI 360
           + N++R+YDPHSNTYN+GWRDNPNLRW NDNQ+ +QA S+S+NQGTNLED++KA  TNT+
Sbjct: 301 DVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTL 360

Query: 361 SFQNEMKQQMSHMTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPLS-EEKVTSTP 420
           SFQ EMKQQM+ +T AISK++GKGKL AQ DHANVSAISLRSGKIL+TP + E+KVTS P
Sbjct: 361 SFQQEMKQQMTQLTTAISKMDGKGKLPAQLDHANVSAISLRSGKILDTPTTKEKKVTSKP 402

Query: 421 ILLENTDEKKEEKLETSSLPSSSKG-KSHILDYSPYIP 449
           + L + +E KEEK+ET+  PS+SK  KS + D++PYIP
Sbjct: 421 LPLNSKNESKEEKVETNPSPSNSKNDKSPLNDFTPYIP 402

[Close]

BLAST of PI0025174 vs. NCBI nr
Match: TYK04216.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 478.0 bits (1229), Expect = 9.1e-131
Identity = 259/429 (60.37%), Postives = 301/429 (70.16%), Query Frame = 0


Query: 26  RREETIHN-FPRDPIENLEPNLE---HPNLDRENMGQVREKTLRELSEPDEDQRPLCIVI 85
           R E  I N + + P+  LEP+L+    PNL R NMG+VREK LREL EPDEDQRPLCI+I
Sbjct: 2   REENNILNLYNQQPLRGLEPSLDSPLDPNLGRGNMGEVREKNLRELVEPDEDQRPLCIII 61

Query: 86  PPTTQPFELKPGLIHLLPIYKDSLGEDPHKHFKDFHMVCDSMRLHGVSEEQLNLRAFPFS 145
           PPTTQPFELK GLIHLLPI+K S GEDPHKH KDF+MVCDSMRLHG+S+EQLNLRAFPFS
Sbjct: 62  PPTTQPFELKSGLIHLLPIFKGSFGEDPHKHHKDFYMVCDSMRLHGISKEQLNLRAFPFS 121

Query: 146 LTDTAKRWLYYLEPGSITTWGSLKKKFIEKFFPASRANNIRKEIYGTGKLFGSLCLNTGK 205
           L D AKRWLYYLEPGSITTW                                        
Sbjct: 122 LMDVAKRWLYYLEPGSITTW---------------------------------------- 181

Query: 206 DAAAGGALADKTPTEARELISRMTENSQNFGNRTSELDNSLTKEVSELKLQMLNMTTLLT 265
           DAAAGGALADKTP EARELISRMTE SQ+FGNR SELDNSLTK                 
Sbjct: 182 DAAAGGALADKTPIEARELISRMTEISQSFGNRASELDNSLTK----------------- 241

Query: 266 SFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWRN 325
                       CGVCGLVGHPNDK P+++ + N+++KYDPH NTYN+GWRDNPNLRW N
Sbjct: 242 -----------VCGVCGLVGHPNDKCPEVISDVNIVQKYDPHGNTYNSGWRDNPNLRWGN 301

Query: 326 DNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQNEMKQQMSHMTNAISKLEGKGKLLAQ 385
           DNQ+ +QA  +S+NQGTNLED++KA  TNT+SFQ EMKQQM+ +T AISK++GKGKL  Q
Sbjct: 302 DNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLTDQ 361

Query: 386 PDHANVSAISLRSGKILET-PLSEEKVTSTPILLENTDEKKEEKLETSSLPSSSKG-KSH 445
           P+HANVS ISLRSGKIL+T    E+KVTS P+ L + +E KEEK+ET+  PS SK  K  
Sbjct: 362 PNHANVSTISLRSGKILDTLTTKEKKVTSKPLPLNSKNESKEEKIETNPSPSKSKNDKPP 362

Query: 446 ILDYSPYIP 449
           + D++PYIP
Sbjct: 422 LNDFTPYIP 362

[Close]

BLAST of PI0025174 vs. NCBI nr
Match: KAA0062012.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 471.5 bits (1212), Expect = 8.5e-129
Identity = 240/351 (68.38%), Postives = 272/351 (77.49%), Query Frame = 0


Query: 56  MGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHFKD 115
           MG+VREKTLREL EPDEDQRPLC+VIPPTTQPFELK GLIHLLPI+K S GEDP+KH KD
Sbjct: 1   MGEVREKTLRELVEPDEDQRPLCVVIPPTTQPFELKLGLIHLLPIFKGSSGEDPYKHLKD 60

Query: 116 FHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFFPA 175
           FHMVCDSMR HG+SEEQLNLRAFPFSLTD  KRWLYYLEP                    
Sbjct: 61  FHMVCDSMRPHGISEEQLNLRAFPFSLTDVVKRWLYYLEP-------------------- 120

Query: 176 SRANNIRKEIYGTGKLFGSLCLNTGKDAAAGGALADKTPTEARELISRMTENSQNFGNRT 235
                                     DA AG ALADKTPT+A ELISRM ENSQ+FGNR 
Sbjct: 121 -------------------------VDAVAGEALADKTPTKAGELISRMAENSQSFGNRA 180

Query: 236 SELDNSLTKEVSELKLQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEAN 295
            ELDNSLTKEVSELK QMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDK P+++E+ N
Sbjct: 181 LELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVN 240

Query: 296 VIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQ 355
           ++R+YDPH NTYN+ WRDNPNLRW NDNQ+ +QA S+S+NQGTNL+D++KA  TNT+SFQ
Sbjct: 241 IVRRYDPHGNTYNSRWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLKDIIKALVTNTLSFQ 300

Query: 356 NEMKQQMSHMTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPLSEEK 407
            EMKQQM+ +T AISK++GKGKLLAQP+H NVSAI LRSGKIL+TP ++EK
Sbjct: 301 QEMKQQMTQLTTAISKMDGKGKLLAQPEHDNVSAILLRSGKILDTPTTKEK 306

[Close]

BLAST of PI0025174 vs. NCBI nr
Match: KAA0025369.1 (uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK23432.1 uncharacterized protein E5676_scaffold605G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 463.8 bits (1192), Expect = 1.8e-126
Identity = 274/490 (55.92%), Postives = 317/490 (64.69%), Query Frame = 0


Query: 1   MTRSSNQELHFFEDLNREVRRIRRERREE-TIHNFP-RDPIENLEPNLE---HPNLDREN 60
           MTRSSN +  +FEDLNREVRRIRRERREE +IHN   ++P+  LEP+L+    PNL R N
Sbjct: 1   MTRSSNLKFSYFEDLNREVRRIRRERREENSIHNLSNQEPLRGLEPSLDSPLDPNLGRGN 60

Query: 61  MGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHFKD 120
           +G+VREKTLREL+EPDEDQRPLCIVIP TTQPFELK GLIHLL I+K S GED HKH KD
Sbjct: 61  LGEVREKTLRELAEPDEDQRPLCIVIPSTTQPFELKSGLIHLLLIFKGSFGEDLHKHLKD 120

Query: 121 FHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFFPA 180
           FHMVC SMR H +SEEQLNLRAFPF LTD AKRWLYYLEP  ITTW SLKKKF+EKFFPA
Sbjct: 121 FHMVCGSMRPHSISEEQLNLRAFPFFLTDVAKRWLYYLEPDFITTWSSLKKKFLEKFFPA 180

Query: 181 SRANNIRKEIYGTGKLFG--------------------------------SLCLNTGK-- 240
           SRANNIRKEIYG  + FG                                S  L++ +  
Sbjct: 181 SRANNIRKEIYGIRQAFGESLSEYWERSKELYASFPHHHISDPSLIQYFYSGLLSSDRNT 240

Query: 241 -DAAAGGALADKTPTEARELISRMTENSQNFGNRTSELDNSLTKEVSELKLQMLNMTTLL 300
            D AAGGALADKT  E RELISRM ENSQ+FGNR SELDNSLTKEVS             
Sbjct: 241 VDTAAGGALADKTLIEVRELISRMVENSQSFGNRASELDNSLTKEVST------------ 300

Query: 301 TSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWR 360
                   +KV KCGVCGLVGHPNDK P+++E+ N++++YDP                  
Sbjct: 301 -------PLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDP------------------ 360

Query: 361 NDNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQNEMKQQMSHMTNAISKLEGKGKLLA 420
                                                MKQQ++ +T AISK+EGKGKLLA
Sbjct: 361 ------------------------------------TMKQQITQLTTAISKMEGKGKLLA 417

Query: 421 QPDHANVSAISLRSGKILETPLS-EEKVTSTPILLENTDEKKEEKLETSSLPSSSKG-KS 449
           Q DHANVSAISLRSGKIL TP + E+KVTS P+ L + +E KEEK+ET+  PS+SK  KS
Sbjct: 421 QQDHANVSAISLRSGKILNTPTTKEKKVTSEPLPLNSKNESKEEKVETNPSPSNSKNEKS 417

The following BLAST results are available for this feature:

BLAST of PI0025174 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025174 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRF5	4.8e-170	66.46	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7VQ60	2.1e-141	63.10	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3C1D3	4.4e-131	60.37	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7V1C6	4.1e-129	68.38	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DIP6	8.6e-127	55.92	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of PI0025174 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031967.1	9.9e-170	66.46	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotranspos...	[more]
KAA0067359.1	4.3e-141	63.10	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotranspos...	[more]
TYK04216.1	9.1e-131	60.37	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0062012.1	8.5e-129	68.38	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0025369.1	1.8e-126	55.92	uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of PI0025174 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 12..32
None	No IPR available	COILS	Coil	Coil	coord: 355..375
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 320..339
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 303..339
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 409..437
None	No IPR available	PANTHER	PTHR24559:SF334	SUBFAMILY NOT NAMED	coord: 202..325 coord: 110..188
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 202..325
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 110..188
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 137..185 e-value: 5.2E-5 score: 23.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025174.1	PI0025174.1	mRNA