PI0025172 (gene) Melon (PI 482460) v1

Overview


Name	PI0025172
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr06: 21551629 .. 21551826 (-)
RNA-Seq Expression	PI0025172
Synteny	PI0025172

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATAACATGAGAGAAAACAACTCATATCGAAGGAGAGACGAGTTAGGGACCTCCGACAGATCAGTGATGAAACTCAAAGGGAAAATGGGTGATTCAGAAACACCTATGGACAACCCGACGGAAACTATCGATAGAAGTAAGTATAAAAAGCTCGAGATGCCTCTATTCCTCGATAACAACCCAGAATCTTGA

mRNA sequence

ATGGCTGATAACATGAGAGAAAACAACTCATATCGAAGGAGAGACGAGTTAGGGACCTCCGACAGATCAGTGATGAAACTCAAAGGGAAAATGGGTGATTCAGAAACACCTATGGACAACCCGACGGAAACTATCGATAGAAGTAAGTATAAAAAGCTCGAGATGCCTCTATTCCTCGATAACAACCCAGAATCTTGA

Coding sequence (CDS)

ATGGCTGATAACATGAGAGAAAACAACTCATATCGAAGGAGAGACGAGTTAGGGACCTCCGACAGATCAGTGATGAAACTCAAAGGGAAAATGGGTGATTCAGAAACACCTATGGACAACCCGACGGAAACTATCGATAGAAGTAAGTATAAAAAGCTCGAGATGCCTCTATTCCTCGATAACAACCCAGAATCTTGA

Protein sequence

MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDNNPES

Homology

[Close]

BLAST of PI0025172 vs. ExPASy TrEMBL
Match: A0A5D3E4T6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00470 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.9e-12
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 1  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLD 60
          +AD M+E+ SY++R+E GTS+ SVMKLKGKM ++E   +    +IDRSKYKKLEMP+FL 
Sbjct: 34 LADEMKESQSYKKREESGTSNGSVMKLKGKMEETELMTETNVASIDRSKYKKLEMPMFLG 93

Query: 61 NNPES 66
           NPES
Sbjct: 94 ENPES 98

[Close]

BLAST of PI0025172 vs. ExPASy TrEMBL
Match: A0A5D3BWR3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00210 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.9e-12
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 1   MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLD 60
           MA++MRE+N++R +DE  TSD S +K KGKM D ET MDN   T DRSKYKKLEMP+F+ 
Sbjct: 152 MAEDMRESNTHRCKDESCTSDGSTLKRKGKMEDLETMMDNGIVTADRSKYKKLEMPMFVG 211

Query: 61  NNPES 66
            NPES
Sbjct: 212 ENPES 216

[Close]

BLAST of PI0025172 vs. ExPASy TrEMBL
Match: A0A5A7TII1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001860 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.9e-12
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 1  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLD 60
          +AD +REN SY++++E GTSD S+MK+KGKM +++   +  T  +DRSKYKKLEMP+FL 
Sbjct: 34 LADELRENQSYKKKEESGTSDGSIMKMKGKMEETDITGEVNTHLVDRSKYKKLEMPMFLG 93

Query: 61 NNPES 66
           NPES
Sbjct: 94 ENPES 98

[Close]

BLAST of PI0025172 vs. ExPASy TrEMBL
Match: A0A5D3CXP0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00230 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.9e-12
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 1  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLD 60
          +AD +REN SY++++E GTSD S+MK+KGKM +++   +  T  +DRSKYKKLEMP+FL 
Sbjct: 34 LADELRENQSYKKKEESGTSDGSIMKMKGKMEETDITGEVNTHLVDRSKYKKLEMPMFLG 93

Query: 61 NNPES 66
           NPES
Sbjct: 94 ENPES 98

[Close]

BLAST of PI0025172 vs. ExPASy TrEMBL
Match: A0A5D3DVI3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00980 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.4e-12
Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 2  ADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDN 61
          AD +REN SY++++E GTSD S+MK+KGKM + +   +  T  +DRSKYKKLEMP+FL  
Sbjct: 35 ADELRENQSYKKKEESGTSDGSIMKMKGKMEEMDVTTEVNTTMVDRSKYKKLEMPMFLGE 94

Query: 62 NPES 66
          NPES
Sbjct: 95 NPES 98

[Close]

BLAST of PI0025172 vs. NCBI nr
Match: KAA0033977.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02569.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 1   MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLD 60
           MA++MRE+N++R +DE  TSD S +K KGKM D ET MDN   T DRSKYKKLEMP+F+ 
Sbjct: 152 MAEDMRESNTHRCKDESCTSDGSTLKRKGKMEDLETMMDNGIVTADRSKYKKLEMPMFVG 211

Query: 61  NNPES 66
            NPES
Sbjct: 212 ENPES 216

[Close]

BLAST of PI0025172 vs. NCBI nr
Match: KAA0041225.1 (uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 1  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLD 60
          +AD +REN SY++++E GTSD S+MK+KGKM +++   +  T  +DRSKYKKLEMP+FL 
Sbjct: 34 LADELRENQSYKKKEESGTSDGSIMKMKGKMEETDITGEVNTHLVDRSKYKKLEMPMFLG 93

Query: 61 NNPES 66
           NPES
Sbjct: 94 ENPES 98

[Close]

BLAST of PI0025172 vs. NCBI nr
Match: KAA0065941.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30285.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 1  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLD 60
          +AD M+E+ SY++R+E GTS+ SVMKLKGKM ++E   +    +IDRSKYKKLEMP+FL 
Sbjct: 34 LADEMKESQSYKKREESGTSNGSVMKLKGKMEETELMTETNVASIDRSKYKKLEMPMFLG 93

Query: 61 NNPES 66
           NPES
Sbjct: 94 ENPES 98

[Close]

BLAST of PI0025172 vs. NCBI nr
Match: TYK16028.1 (uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 1  MADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLD 60
          +AD +REN SY++++E GTSD S+MK+KGKM +++   +  T  +DRSKYKKLEMP+FL 
Sbjct: 34 LADELRENQSYKKKEESGTSDGSIMKMKGKMEETDITGEVNTHLVDRSKYKKLEMPMFLG 93

Query: 61 NNPES 66
           NPES
Sbjct: 94 ENPES 98

[Close]

BLAST of PI0025172 vs. NCBI nr
Match: KAA0062473.1 (uncharacterized protein E6C27_scaffold130G00620 [Cucumis melo var. makuwa] >TYK27409.1 uncharacterized protein E5676_scaffold325G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 2  ADNMRENNSYRRRDELGTSDRSVMKLKGKMGDSETPMDNPTETIDRSKYKKLEMPLFLDN 61
          AD +REN SY++++E GTSD S+MK+KGKM + +   +  T  +DRSKYKKLEMP+FL  
Sbjct: 35 ADELRENQSYKKKEESGTSDGSIMKMKGKMEEMDVTTEVNTTMVDRSKYKKLEMPMFLGE 94

Query: 62 NPES 66
          NPES
Sbjct: 95 NPES 98

The following BLAST results are available for this feature:

BLAST of PI0025172 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025172 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E4T6	4.9e-12	60.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BWR3	4.9e-12	63.08	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TII1	4.9e-12	56.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CXP0	4.9e-12	56.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DVI3	8.4e-12	57.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0025172 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033977.1	1.0e-11	63.08	retrotransposon protein [Cucumis melo var. makuwa] >TYK02569.1 retrotransposon p...	[more]
KAA0041225.1	1.0e-11	56.92	uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa]	[more]
KAA0065941.1	1.0e-11	60.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK30285.1 retrotransposon p...	[more]
TYK16028.1	1.0e-11	56.92	uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa]	[more]
KAA0062473.1	1.7e-11	57.81	uncharacterized protein E6C27_scaffold130G00620 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of PI0025172 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025172.1	PI0025172.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding