PI0024920 (gene) Melon (PI 482460) v1

Overview


Name	PI0024920
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	chr04: 27448548 .. 27450105 (-)
RNA-Seq Expression	PI0024920
Synteny	PI0024920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCTACTCGCAAAGGAATCTATCAGTATACTGTCTCGGATTATCCTATTGATGGTCAGGGTAGGTTTGTTGCTTCAGATGTTTCGATTGGTGTTTCTGAAGCTCAAACACGAGGAGTTTCTTTGCCTCTTTCTAAGCGTCTCAAACTAGTCCCTGACCGACAACCTAGGATGCATCGAAATGCTTCAGGTACTGATTATTGTACTCTCGGTTCTAATCATACAATGCATGAGGCTACTTCTACTTCTGATTCTTTTGTACACTCTCGGCCTCACATCGTTAAACCTATGAGGGACTCTGTTTTTCCTAACTTTTCTACTCGAGTTCCTATGACTTCTATAGGTCACCTTGGCATTGATTCTTCAGTCGTTAACTATAGTGATACGCCTAGTGTTGCGTCAAAAGCTAAGCACCATGGGTCCGTTCCCTTGTCCAATAATGCTGCTCCTGGTGGTTTTGTGCCCCTGGTGCTGCTGCTTCCAAGGTTTATCCATTTGTTCCCTTTGATTCCTCTGATGATGATGACATTGTTATTCCGCACCTTCTACGACGTTCCAAGAAGTTTGCCCTTAATCCTCCCATCCAATCTCAGCCCTACGAGGATGTGTCTGTTTGTGTCTCTAAAGATTATGGCAAATCTCGCAAGCCCCGACCTGTTCATGCCAATCCTCCAAAGGGCCTGAAAGTGGTTACCACTAAGTATTGACGAAGTTCCCCCTCATGTTCCTGTTATGCCTATTGACGGAGTACTTTTCATTATGAAGATAATGTTCAAAAATGGAAATATGTTGTTCAACGATGAATAACATATAAGGTTAACATTTCTGATCAGCATCACTCATGTCTTACTATTATAGAGCTCATTCACCGTGTCGGGATTACTAAGCCTATTTCTAAAGTTGGCCTCTATTACCCTCATTTGATTCGTGAGCCTATTATCAACCTACCTACTGAATTTGACGATCCCAACAGTTCTGAGTATTAGAAGATACATGTCCATGGTCTGTGTTTCATATGTTTTCTGCAATTATTAATGAGTTCCTGGGTGTTTTATTGCCTCCAAACTTCACTGTTCCATAGCCTTCTCCTAAGTTTCTAGCCACAAAGCTCACTAGTGGTACGGTCTCCAAATGGCCTGCTAATGGGCAACTTTTTGCTATTTCGTTGAGTGTCAAGTATGTTATACTGCACAAGATTGGCATTGCAACCTAGCTTCCATCCACACATGCGTCCAGCGTTTCCATAGCCTTGACCAATTTCATTTACCTTGTTGGCACTGAAGCTCTGAATTATGTTGAGCAGTTTGTTTTCAACCATCTTCTTCACCTTGTTAAGACGTTTGGGTTGAAAATTCCTATTTCTTTTCCTTGCCTCTTATGTAGCATTCTGTTTTCTCAACATTACTCTATGTTGACTGCACATGATGCTTCTGGCCTTGCCCCTAAGACTCTCAATCTTAGCTACCCTTTGTTTCTGGGGTCCCATGTTCCTGATATTGCCTATCCTATGCGGCCTCCACGTCGTGAAGATCTTGAGCTTTCTGCGGATGTTTGA

mRNA sequence

ATGGTTGCTACTCGCAAAGGAATCTATCAGTATACTGTCTCGGATTATCCTATTGATGGTCAGGGTAGGTTTGTTGCTTCAGATGTTTCGATTGGTGTTTCTGAAGCTCAAACACGAGGAGTTTCTTTGCCTCTTTCTAAGCGTCTCAAACTAGTCCCTGACCGACAACCTAGGATGCATCGAAATGCTTCAGGTACTGATTATTGTACTCTCGGTTCTAATCATACAATGCATGAGGCTACTTCTACTTCTGATTCTTTTGTACACTCTCGGCCTCACATCGTTAAACCTATGAGGGACTCTGTTTTTCCTAACTTTTCTACTCGAGTTCCTATGACTTCTATAGGTCACCTTGGCATTGATTCTTCAGTCGTTAACTATAGTGATACGCCTAGTGTTGCGTCAAAAGCTAAGCACCATGGGTCCGTTCCCTTGTCCAATAATGCTGCTCCTGGTGGTTTTGTGCCCCTGGTGCTGCTGCTTCCAAGCATTCTGTTTTCTCAACATTACTCTATGTTGACTGCACATGATGCTTCTGGCCTTGCCCCTAAGACTCTCAATCTTAGCTACCCTTTGTTTCTGGGGTCCCATGTTCCTGATATTGCCTATCCTATGCGGCCTCCACGTCGTGAAGATCTTGAGCTTTCTGCGGATGTTTGA

Coding sequence (CDS)

ATGGTTGCTACTCGCAAAGGAATCTATCAGTATACTGTCTCGGATTATCCTATTGATGGTCAGGGTAGGTTTGTTGCTTCAGATGTTTCGATTGGTGTTTCTGAAGCTCAAACACGAGGAGTTTCTTTGCCTCTTTCTAAGCGTCTCAAACTAGTCCCTGACCGACAACCTAGGATGCATCGAAATGCTTCAGGTACTGATTATTGTACTCTCGGTTCTAATCATACAATGCATGAGGCTACTTCTACTTCTGATTCTTTTGTACACTCTCGGCCTCACATCGTTAAACCTATGAGGGACTCTGTTTTTCCTAACTTTTCTACTCGAGTTCCTATGACTTCTATAGGTCACCTTGGCATTGATTCTTCAGTCGTTAACTATAGTGATACGCCTAGTGTTGCGTCAAAAGCTAAGCACCATGGGTCCGTTCCCTTGTCCAATAATGCTGCTCCTGGTGGTTTTGTGCCCCTGGTGCTGCTGCTTCCAAGCATTCTGTTTTCTCAACATTACTCTATGTTGACTGCACATGATGCTTCTGGCCTTGCCCCTAAGACTCTCAATCTTAGCTACCCTTTGTTTCTGGGGTCCCATGTTCCTGATATTGCCTATCCTATGCGGCCTCCACGTCGTGAAGATCTTGAGCTTTCTGCGGATGTTTGA

Protein sequence

MVATRKGIYQYTVSDYPIDGQGRFVASDVSIGVSEAQTRGVSLPLSKRLKLVPDRQPRMHRNASGTDYCTLGSNHTMHEATSTSDSFVHSRPHIVKPMRDSVFPNFSTRVPMTSIGHLGIDSSVVNYSDTPSVASKAKHHGSVPLSNNAAPGGFVPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPRREDLELSADV

Homology

[Close]

BLAST of PI0024920 vs. ExPASy TrEMBL
Match: A0A5A7VD06 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00420 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.5e-07
Identity = 54/180 (30.00%), Postives = 86/180 (47.78%), Query Frame = 0


Query: 53  PDRQPRMHRNASGTDYCTLGSNHTMHEATSTSDSFVH-SRPHIVKPMRDSVFPNFSTR-- 112
           P R P      S +D     SN ++H+++ TS+   H    H+V P    +  + + R  
Sbjct: 22  PYRPPCEQGQVSSSD----RSNDSLHDSSVTSNVPEHVESEHVVPPEIHLLDMDSNERDD 81

Query: 113 VPMTSIGHLGIDSSVVNYSDTPSVASKAKHHGSVP-----LSNNAAPGGFVPLVLLLPSI 172
           +P+  I   G+   +   S   S  S A H   VP      +++++    VP +  L  +
Sbjct: 82  IPLAHILKHGLFGKLSQPSINVSSTSVAYHFSHVPSVSMHSTSSSSQNDIVPTLFNLIQL 141

Query: 173 LFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR------REDLELSAD 219
           +   + ++LT HDA G  PKTL+LSY LF G HVPD+ +  RP R       ED+ +S +
Sbjct: 142 VVHLNPNILTEHDAFGPEPKTLSLSYRLFQGRHVPDLNHDTRPSRNPHTFDNEDINISLE 197

[Close]

BLAST of PI0024920 vs. ExPASy TrEMBL
Match: A0A5A7VDH4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00030 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 155 VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR 210
           +PL    PS+L   +  +LTA+DA GL PKT +LSY LF GSHVPD+ + MRP R
Sbjct: 117 IPLPHFFPSLLVYLNVDILTANDAPGLDPKTFSLSYRLFQGSHVPDLEHDMRPSR 171

[Close]

BLAST of PI0024920 vs. ExPASy TrEMBL
Match: A0A5A7V746 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00500 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.8e-05
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 155 VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRP---PRRE 214
           +PL     S+L   +  +LT +D  G  PKTL+LSY LF GSHVPDI + MRP   PR  
Sbjct: 30  IPLSRFFSSLLVHLNVDILTLNDTPGPNPKTLSLSYKLFQGSHVPDIEHDMRPSKNPRMF 89

[Close]

BLAST of PI0024920 vs. ExPASy TrEMBL
Match: A0A5A7VI17 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00020 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 155 VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPRREDLE 214
           +PL+L   S+L   +  +LT  DA GL  KTL+LSY  F  SHVPDI + MRP R   + 
Sbjct: 296 IPLLLFFSSLLIHLNVEILTLVDALGLYSKTLSLSYRFFQESHVPDIEHDMRPSRNHCMF 355

Query: 215 LSADV 220
            + DV
Sbjct: 356 DTNDV 360

[Close]

BLAST of PI0024920 vs. ExPASy TrEMBL
Match: A0A5D3CEK6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00590 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 32/87 (36.78%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 123 SVVNYSDTPSVASKAKHHGSVPLSNNAAPGGFVPLVLLLPSILFSQHYSMLTAHDASGLA 182
           ++ N+  +   +S  +H G+  +  +      +PL     S+L   + ++LTA DA G  
Sbjct: 222 NIANWFPSSHASSLLRHVGTFGVKIH------IPLPRFFSSLLVHLNANILTARDALGPD 281

Query: 183 PKTLNLSYPLFLGSHVPDIAYPMRPPR 210
            KTL+LSY LF GSHVPD+ + MRP R
Sbjct: 282 QKTLSLSYKLFKGSHVPDLEHDMRPSR 302

[Close]

BLAST of PI0024920 vs. NCBI nr
Match: KAA0063409.1 (uncharacterized protein E6C27_scaffold508G00450 [Cucumis melo var. makuwa] >TYK11668.1 uncharacterized protein E5676_scaffold828G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-06
Identity = 54/180 (30.00%), Postives = 86/180 (47.78%), Query Frame = 0


Query: 53  PDRQPRMHRNASGTDYCTLGSNHTMHEATSTSDSFVH-SRPHIVKPMRDSVFPNFSTR-- 112
           P R P      S +D     SN ++H+++ TS+   H    H+V P    +  + + R  
Sbjct: 22  PYRPPCEQGQVSSSD----RSNDSLHDSSVTSNVPEHVESEHVVPPEIHLLDMDSNERDD 81

Query: 113 VPMTSIGHLGIDSSVVNYSDTPSVASKAKHHGSVP-----LSNNAAPGGFVPLVLLLPSI 172
           +P+  I   G+   +   S   S  S A H   VP      +++++    VP +  L  +
Sbjct: 82  IPLAHILKHGLFGKLSQPSINVSSTSVAYHFSHVPSVSMHSTSSSSQNDIVPTLFNLIQL 141

Query: 173 LFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR------REDLELSAD 219
           +   + ++LT HDA G  PKTL+LSY LF G HVPD+ +  RP R       ED+ +S +
Sbjct: 142 VVHLNPNILTEHDAFGPEPKTLSLSYRLFQGRHVPDLNHDTRPSRNPHTFDNEDINISLE 197

[Close]

BLAST of PI0024920 vs. NCBI nr
Match: KAA0063935.1 (uncharacterized protein E6C27_scaffold616G00780 [Cucumis melo var. makuwa] >TYK11298.1 uncharacterized protein E5676_scaffold1827G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 4.3e-06
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 155 VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPR 210
           +PL    PS+L   +  +LTA+DA GL PKT +LSY LF GSHVPD+ + MRP R
Sbjct: 117 IPLPHFFPSLLVYLNVDILTANDAPGLDPKTFSLSYRLFQGSHVPDLEHDMRPSR 171

[Close]

BLAST of PI0024920 vs. NCBI nr
Match: KAA0062797.1 (uncharacterized protein E6C27_scaffold357G00140 [Cucumis melo var. makuwa] >TYJ96756.1 uncharacterized protein E5676_scaffold986G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-04
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 155 VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRP---PRRE 214
           +PL     S+L   +  +LT +D  G  PKTL+LSY LF GSHVPDI + MRP   PR  
Sbjct: 30  IPLSRFFSSLLVHLNVDILTLNDTPGPNPKTLSLSYKLFQGSHVPDIEHDMRPSKNPRMF 89

[Close]

BLAST of PI0024920 vs. NCBI nr
Match: KAA0025798.1 (uncharacterized protein E6C27_scaffold34G00480 [Cucumis melo var. makuwa] >TYK09658.1 uncharacterized protein E5676_scaffold447G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 3.1e-04
Identity = 32/87 (36.78%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 123 SVVNYSDTPSVASKAKHHGSVPLSNNAAPGGFVPLVLLLPSILFSQHYSMLTAHDASGLA 182
           ++ N+  +   +S  +H G+  +  +      +PL     S+L   + ++LTA DA G  
Sbjct: 222 NIANWFPSSHASSLLRHVGTFGVKIH------IPLPRFFSSLLVHLNANILTARDALGPD 281

Query: 183 PKTLNLSYPLFLGSHVPDIAYPMRPPR 210
            KTL+LSY LF GSHVPD+ + MRP R
Sbjct: 282 QKTLSLSYKLFKGSHVPDLEHDMRPSR 302

[Close]

BLAST of PI0024920 vs. NCBI nr
Match: KAA0067004.1 (uncharacterized protein E6C27_scaffold38G00370 [Cucumis melo var. makuwa] >TYK26240.1 uncharacterized protein E5676_scaffold14G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 3.1e-04
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 155 VPLVLLLPSILFSQHYSMLTAHDASGLAPKTLNLSYPLFLGSHVPDIAYPMRPPRREDLE 214
           +PL+L   S+L   +  +LT  DA GL  KTL+LSY  F  SHVPDI + MRP R   + 
Sbjct: 296 IPLLLFFSSLLIHLNVEILTLVDALGLYSKTLSLSYRFFQESHVPDIEHDMRPSRNHCMF 355

Query: 215 LSADV 220
            + DV
Sbjct: 356 DTNDV 360

The following BLAST results are available for this feature:

BLAST of PI0024920 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VD06	5.5e-07	30.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VDH4	2.1e-06	54.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V746	8.8e-05	47.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VI17	1.5e-04	46.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CEK6	1.5e-04	36.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0024920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063409.1	1.1e-06	30.00	uncharacterized protein E6C27_scaffold508G00450 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0063935.1	4.3e-06	54.55	uncharacterized protein E6C27_scaffold616G00780 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0062797.1	1.8e-04	47.62	uncharacterized protein E6C27_scaffold357G00140 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAA0025798.1	3.1e-04	36.78	uncharacterized protein E6C27_scaffold34G00480 [Cucumis melo var. makuwa] >TYK09...	[more]
KAA0067004.1	3.1e-04	46.15	uncharacterized protein E6C27_scaffold38G00370 [Cucumis melo var. makuwa] >TYK26...	[more]

BLAST of PI0024920 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024920.1	PI0024920.1	mRNA