PI0024877 (gene) Melon (PI 482460) v1

Overview
NamePI0024877
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionGag-pol
Locationchr02: 11243344 .. 11243796 (-)
RNA-Seq ExpressionPI0024877
SyntenyPI0024877
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGACCTCTGCGATACTGAGTTAGAAGATTTCAGAGAGTCACAAGACGTGACGTTGGCACCTGAGTCGCAAACCACAGTCGTTCTCGATGAGCCGGTTGATGAACCAACTCCACAAGAAAATCAAACAACTATTGTGGAAGTTGGCGAGACGCGGGCTCCTTCGCCGCCTAAGCAAACTGCAAATCCACCACACCATGCAGCAGAAGAGAATGACGATGAGGAATTCTTCAAATACATTGATGAGACTGTCGCCAAGCCAATGACGAATGGATTTGAAGAAGTCTTCCAAACCCAAGTCAGTCTGAAAAAGCTTGCGGCAAAACATGAGAAGCAGATTTTAGACTTGGGAAAAAAAGTGGATAACTACCATCAATTGCAAAAAGACCAACTCGCATCTGAAGTCGCGAGTCTGAATGAGCAAAAACAAGGCGATTGTGGGATTGATTAA

mRNA sequence

ATGCAAGACCTCTGCGATACTGAGTTAGAAGATTTCAGAGAGTCACAAGACGTGACGTTGGCACCTGAGTCGCAAACCACAGTCGTTCTCGATGAGCCGGTTGATGAACCAACTCCACAAGAAAATCAAACAACTATTGTGGAAGTTGGCGAGACGCGGGCTCCTTCGCCGCCTAAGCAAACTGCAAATCCACCACACCATGCAGCAGAAGAGAATGACGATGAGGAATTCTTCAAATACATTGATGAGACTGTCGCCAAGCCAATGACGAATGGATTTGAAGAAGTCTTCCAAACCCAAGTCAGTCTGAAAAAGCTTGCGGCAAAACATGAGAAGCAGATTTTAGACTTGGGAAAAAAAGTGGATAACTACCATCAATTGCAAAAAGACCAACTCGCATCTGAAGTCGCGAGTCTGAATGAGCAAAAACAAGGCGATTGTGGGATTGATTAA

Coding sequence (CDS)

ATGCAAGACCTCTGCGATACTGAGTTAGAAGATTTCAGAGAGTCACAAGACGTGACGTTGGCACCTGAGTCGCAAACCACAGTCGTTCTCGATGAGCCGGTTGATGAACCAACTCCACAAGAAAATCAAACAACTATTGTGGAAGTTGGCGAGACGCGGGCTCCTTCGCCGCCTAAGCAAACTGCAAATCCACCACACCATGCAGCAGAAGAGAATGACGATGAGGAATTCTTCAAATACATTGATGAGACTGTCGCCAAGCCAATGACGAATGGATTTGAAGAAGTCTTCCAAACCCAAGTCAGTCTGAAAAAGCTTGCGGCAAAACATGAGAAGCAGATTTTAGACTTGGGAAAAAAAGTGGATAACTACCATCAATTGCAAAAAGACCAACTCGCATCTGAAGTCGCGAGTCTGAATGAGCAAAAACAAGGCGATTGTGGGATTGATTAA

Protein sequence

MQDLCDTELEDFRESQDVTLAPESQTTVVLDEPVDEPTPQENQTTIVEVGETRAPSPPKQTANPPHHAAEENDDEEFFKYIDETVAKPMTNGFEEVFQTQVSLKKLAAKHEKQILDLGKKVDNYHQLQKDQLASEVASLNEQKQGDCGID
Homology
BLAST of PI0024877 vs. ExPASy TrEMBL
Match: A0A5A7U0L9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00960 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.4e-09
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 50  GETRAPSPPKQTANPPHHAAEENDDEE-FFKYIDETVAKPMTNGFEEVFQTQVSLKKLAA 109
           GET AP P KQ  N   +AA E+D+E+ +FK+I +T  KP+ +GF++VFQ QV L++   
Sbjct: 12  GETHAPLPLKQINNQQKNAAGESDNEDHYFKFIGDTFGKPVMDGFKDVFQNQVDLQECTW 71

Query: 110 KHEKQILDLGKKVDNYHQ 127
           +HEKQI DL  K+DN +Q
Sbjct: 72  RHEKQIQDLELKIDNCNQ 89

BLAST of PI0024877 vs. ExPASy TrEMBL
Match: A0A5D3E1H0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00350 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 44/140 (31.43%), Postives = 75/140 (53.57%), Query Frame = 0

Query: 1   MQDLCDTELEDF--------RESQDVTLA-PESQTTVVLDEPVDEPTPQENQTTIVEVGE 60
           +QDL    L D         +ES++ TL         +L++ +D+P  +  Q    +  +
Sbjct: 51  LQDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASK 110

Query: 61  TRAPSPPKQTANPPHHAA--------EENDDEEFFKYIDETVAKPMTNGFEEVFQTQVSL 120
           TR PSPPKQ+  P             +++DDE +FK+I+E V++P+  GFE+VFQ Q +L
Sbjct: 111 TRQPSPPKQSPKPTMQDTKQKEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANL 170

Query: 121 KKLAAKHEKQILDLGKKVDN 124
           ++   +++K + DL  K D+
Sbjct: 171 QETQLQNQKPLQDLELKPDS 190

BLAST of PI0024877 vs. ExPASy TrEMBL
Match: A0A5A7TJU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00130 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 44/140 (31.43%), Postives = 75/140 (53.57%), Query Frame = 0

Query: 1   MQDLCDTELEDF--------RESQDVTLA-PESQTTVVLDEPVDEPTPQENQTTIVEVGE 60
           +QDL    L D         +ES++ TL         +L++ +D+P  +  Q    +  +
Sbjct: 96  LQDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASK 155

Query: 61  TRAPSPPKQTANPPHHAA--------EENDDEEFFKYIDETVAKPMTNGFEEVFQTQVSL 120
           TR PSPPKQ+  P             +++DDE +FK+I+E V++P+  GFE+VFQ Q +L
Sbjct: 156 TRQPSPPKQSPKPTMQDTKQKEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANL 215

Query: 121 KKLAAKHEKQILDLGKKVDN 124
           ++   +++K + DL  K D+
Sbjct: 216 QETQLQNQKPLQDLELKPDS 235

BLAST of PI0024877 vs. ExPASy TrEMBL
Match: A0A5A7T7V1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001610 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.4e-06
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = 0

Query: 4   LCD--TELED-FRESQDVTLAP-ESQTTVVLDEPVDEPTPQENQTTIVEVGETRAPSPPK 63
           +CD  T +ED  +  +DV+L P  S    VL++ VD+P  +    T     ET  PSPPK
Sbjct: 11  VCDPFTPIEDEIKNLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPK 70

Query: 64  QTANPPHHAAEENDDEEFFKYIDETVAKPMTNGFEEVFQTQVSLKKLAAKHEK 113
           +T+     A E +D +E+FK+I+    KPM +GFE++FQ Q + ++   + +K
Sbjct: 71  ETSKQHDTAKESDDKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSQK 123

BLAST of PI0024877 vs. ExPASy TrEMBL
Match: A0A5D3D8Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00610 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = 0

Query: 4   LCD--TELED-FRESQDVTLAP-ESQTTVVLDEPVDEPTPQENQTTIVEVGETRAPSPPK 63
           +CD  T +ED  +  +DV+L P  S    VL++ VD+P  +    T     ET  PSPPK
Sbjct: 11  VCDPFTPIEDEIKNLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPK 70

Query: 64  QTANPPHHAAEENDDEEFFKYIDETVAKPMTNGFEEVFQTQVSLKKLAAKHEK 113
           +T+     A E ++ +E+FK+I+    KPM +GFE++FQ Q + ++   + EK
Sbjct: 71  ETSKQHDTAKESDEKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSEK 123

BLAST of PI0024877 vs. NCBI nr
Match: KAA0047757.1 (hypothetical protein E6C27_scaffold1059G00180 [Cucumis melo var. makuwa] >TYK02391.1 hypothetical protein E5676_scaffold155G00960 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 4.9e-09
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 50  GETRAPSPPKQTANPPHHAAEENDDEE-FFKYIDETVAKPMTNGFEEVFQTQVSLKKLAA 109
           GET AP P KQ  N   +AA E+D+E+ +FK+I +T  KP+ +GF++VFQ QV L++   
Sbjct: 12  GETHAPLPLKQINNQQKNAAGESDNEDHYFKFIGDTFGKPVMDGFKDVFQNQVDLQECTW 71

Query: 110 KHEKQILDLGKKVDNYHQ 127
           +HEKQI DL  K+DN +Q
Sbjct: 72  RHEKQIQDLELKIDNCNQ 89

BLAST of PI0024877 vs. NCBI nr
Match: TYK29776.1 (hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-06
Identity = 44/140 (31.43%), Postives = 75/140 (53.57%), Query Frame = 0

Query: 1   MQDLCDTELEDF--------RESQDVTLA-PESQTTVVLDEPVDEPTPQENQTTIVEVGE 60
           +QDL    L D         +ES++ TL         +L++ +D+P  +  Q    +  +
Sbjct: 51  LQDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASK 110

Query: 61  TRAPSPPKQTANPPHHAA--------EENDDEEFFKYIDETVAKPMTNGFEEVFQTQVSL 120
           TR PSPPKQ+  P             +++DDE +FK+I+E V++P+  GFE+VFQ Q +L
Sbjct: 111 TRQPSPPKQSPKPTMQDTKQKEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANL 170

Query: 121 KKLAAKHEKQILDLGKKVDN 124
           ++   +++K + DL  K D+
Sbjct: 171 QETQLQNQKPLQDLELKPDS 190

BLAST of PI0024877 vs. NCBI nr
Match: KAA0043584.1 (hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-06
Identity = 44/140 (31.43%), Postives = 75/140 (53.57%), Query Frame = 0

Query: 1   MQDLCDTELEDF--------RESQDVTLA-PESQTTVVLDEPVDEPTPQENQTTIVEVGE 60
           +QDL    L D         +ES++ TL         +L++ +D+P  +  Q    +  +
Sbjct: 96  LQDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASK 155

Query: 61  TRAPSPPKQTANPPHHAA--------EENDDEEFFKYIDETVAKPMTNGFEEVFQTQVSL 120
           TR PSPPKQ+  P             +++DDE +FK+I+E V++P+  GFE+VFQ Q +L
Sbjct: 156 TRQPSPPKQSPKPTMQDTKQKEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANL 215

Query: 121 KKLAAKHEKQILDLGKKVDN 124
           ++   +++K + DL  K D+
Sbjct: 216 QETQLQNQKPLQDLELKPDS 235

BLAST of PI0024877 vs. NCBI nr
Match: KAA0038296.1 (hypothetical protein E6C27_scaffold270G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-06
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = 0

Query: 4   LCD--TELED-FRESQDVTLAP-ESQTTVVLDEPVDEPTPQENQTTIVEVGETRAPSPPK 63
           +CD  T +ED  +  +DV+L P  S    VL++ VD+P  +    T     ET  PSPPK
Sbjct: 11  VCDPFTPIEDEIKNLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPK 70

Query: 64  QTANPPHHAAEENDDEEFFKYIDETVAKPMTNGFEEVFQTQVSLKKLAAKHEK 113
           +T+     A E +D +E+FK+I+    KPM +GFE++FQ Q + ++   + +K
Sbjct: 71  ETSKQHDTAKESDDKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSQK 123

BLAST of PI0024877 vs. NCBI nr
Match: TYK19850.1 (hypothetical protein E5676_scaffold811G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 6.6e-06
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = 0

Query: 4   LCD--TELED-FRESQDVTLAP-ESQTTVVLDEPVDEPTPQENQTTIVEVGETRAPSPPK 63
           +CD  T +ED  +  +DV+L P  S    VL++ VD+P  +    T     ET  PSPPK
Sbjct: 11  VCDPFTPIEDEIKNLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPK 70

Query: 64  QTANPPHHAAEENDDEEFFKYIDETVAKPMTNGFEEVFQTQVSLKKLAAKHEK 113
           +T+     A E ++ +E+FK+I+    KPM +GFE++FQ Q + ++   + EK
Sbjct: 71  ETSKQHDTAKESDEKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSEK 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U0L92.4e-0950.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E1H01.1e-0631.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TJU01.1e-0631.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7T7V12.4e-0636.28Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D8Q53.2e-0636.28Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0047757.14.9e-0950.00hypothetical protein E6C27_scaffold1059G00180 [Cucumis melo var. makuwa] >TYK023... [more]
TYK29776.12.3e-0631.43hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa][more]
KAA0043584.12.3e-0631.43hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa][more]
KAA0038296.15.0e-0636.28hypothetical protein E6C27_scaffold270G001610 [Cucumis melo var. makuwa][more]
TYK19850.16.6e-0636.28hypothetical protein E5676_scaffold811G00610 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0024877.1PI0024877.1mRNA