PI0024722 (gene) Melon (PI 482460) v1

Overview


Name	PI0024722
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	protein P200-like isoform X4
Location	chr04: 8586190 .. 8586627 (+)
RNA-Seq Expression	PI0024722
Synteny	PI0024722

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTAATACCTTGTCAAGAAGAGAGCAGCAAGCAATCTGCAAGAGGAATAAGATTCCGTCCAATATCACTAAAGCCGTCATAGCTGACACTCTTGCCACTCTTCCATCCGTTGAAGAAATCAAAGAGTTTTTTAACAGTAAAAGATCAAGGGTACCTGAATCCCCGATGAAAGCATAGGTTTCCTTGGAAATACCACGAACTGCATTGATAACCTTGACAAGAAGAAAGGTTGTCGAAGATGAGACAATTACTACTGCAATTACTACTCAAACACGTTCTGCTGCAGAAGCAAGAGGCACAGGGGAATCAGAAAACAGAGATCTAATTGTGGCTTTGACAACTCTGTCCTTTCCGGGTGGCTGGAGAAGGACAGTGACAGCTTCTTCAGCTTGCAAGAAAGTGGATTTTCAGATGACGGTTGATGATCAGTAA

mRNA sequence

ATGGATTTTAATACCTTGTCAAGAAGAGAGCAGCAAGCAATCTGCAAGAGGAATAAGATTCCGTCCAATATCACTAAAGCCGTCATAGCTGACACTCTTGCCACTCTTCCATCCGTTGAAGAAATCAAAGAGTTTTTTAACAAAGCAAGAGGCACAGGGGAATCAGAAAACAGAGATCTAATTGTGGCTTTGACAACTCTGTCCTTTCCGGGTGGCTGGAGAAGGACAGTGACAGCTTCTTCAGCTTGCAAGAAAGTGGATTTTCAGATGACGGTTGATGATCAGTAA

Coding sequence (CDS)

ATGGATTTTAATACCTTGTCAAGAAGAGAGCAGCAAGCAATCTGCAAGAGGAATAAGATTCCGTCCAATATCACTAAAGCCGTCATAGCTGACACTCTTGCCACTCTTCCATCCGTTGAAGAAATCAAAGAGTTTTTTAACAAAGCAAGAGGCACAGGGGAATCAGAAAACAGAGATCTAATTGTGGCTTTGACAACTCTGTCCTTTCCGGGTGGCTGGAGAAGGACAGTGACAGCTTCTTCAGCTTGCAAGAAAGTGGATTTTCAGATGACGGTTGATGATCAGTAA

Protein sequence

MDFNTLSRREQQAICKRNKIPSNITKAVIADTLATLPSVEEIKEFFNKARGTGESENRDLIVALTTLSFPGGWRRTVTASSACKKVDFQMTVDDQ

Homology

[Close]

BLAST of PI0024722 vs. ExPASy TrEMBL
Match: A0A0A0LG18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825120 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.5e-35
Identity = 79/95 (83.16%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1  MDFNTLSRREQQAICKRNKIPSNITKAVIADTLATLPSVEEIKEFFNKARGTGESENRDL 60
          MDFNTLSRRE QA+CKRNKIP+NIT  ++AD   TLPSVE IKEFFNKAR T ESENRDL
Sbjct: 1  MDFNTLSRREHQALCKRNKIPANITNVIMAD---TLPSVERIKEFFNKARDTRESENRDL 60

Query: 61 IVALTTLSFPGGWRRTVTASSACKKVDFQMTVDDQ 96
          IVA TTLSFPGGWRRTV ASSACKKVDFQM VDDQ
Sbjct: 61 IVASTTLSFPGGWRRTVAASSACKKVDFQMMVDDQ 92

[Close]

BLAST of PI0024722 vs. ExPASy TrEMBL
Match: A0A5A7UN97 (Putative beta-tubulin polyglutamylase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00410 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.0e-23
Identity = 70/142 (49.30%), Postives = 77/142 (54.23%), Query Frame = 0


Query: 1   MDFNTLSRREQQAICKRNKIPSNITKAVIADTLATLPSVEEIKEFFN------------- 60
           MDF+TLSRRE QA+CKRNKIP+NIT   +AD LA L SVE I+EF N             
Sbjct: 1   MDFHTLSRRELQALCKRNKIPANITNVAMADALAALQSVEGIEEFLNGDRSGVPESPMKV 60

Query: 61  ----------------------------------KARGTGESENRDLIVALTTLSFPGGW 96
                                              ARGT ESENRDL +ALTT S PG  
Sbjct: 61  EVISLEIPRTALRTSTRRKAVKDETITIRSRRGAVARGTEESENRDLNMALTTPSLPGSR 120

[Close]

BLAST of PI0024722 vs. ExPASy TrEMBL
Match: A0A1S3CT90 (probable beta-tubulin polyglutamylase OS=Cucumis melo OX=3656 GN=LOC103504683 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.0e-22
Identity = 70/142 (49.30%), Postives = 76/142 (53.52%), Query Frame = 0


Query: 1   MDFNTLSRREQQAICKRNKIPSNITKAVIADTLATLPSVEEIKEFFN------------- 60
           MDF+TLSRRE QA+CKRNKIP+NIT   +AD LA L SVE I+EF N             
Sbjct: 1   MDFHTLSRRELQALCKRNKIPANITNVAMADALAALQSVEGIEEFLNGDRSGVSESPMKV 60

Query: 61  ----------------------------------KARGTGESENRDLIVALTTLSFPGGW 96
                                              ARGT ESENRD  +ALTT S PG  
Sbjct: 61  EVISLEIPRTALRTSTRRKAVKDETITTRSRRGAVARGTEESENRDFNMALTTPSLPGSR 120

[Close]

BLAST of PI0024722 vs. ExPASy TrEMBL
Match: A0A0A0KKZ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G169010 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 68/143 (47.55%), Postives = 74/143 (51.75%), Query Frame = 0


Query: 1   MDFNTLSRREQQAICKRNKIPSNITKAVIADTLATLPSVEEIKEFFN------------- 60
           MDF TLSRRE QA+CKRNKIP+NIT   +AD LA L SVE I+EF +             
Sbjct: 1   MDFYTLSRRELQALCKRNKIPANITNVAMADALAALQSVEGIEEFLDGDRSGVPESPMKG 60

Query: 61  -----------------------------------KARGTGESENRDLIVALTTLSFPGG 96
                                               AR T ESENRDL +A TT S PG 
Sbjct: 61  EEVVSSEIARTALRTSTRRKAVKDETITTRSRRGAAARDTEESENRDLNMAFTTPSLPGS 120

[Close]

BLAST of PI0024722 vs. ExPASy TrEMBL
Match: A0A6J1I214 (uncharacterized protein LOC111469129 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469129 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.5e-20
Identity = 66/142 (46.48%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 1   MDFNTLSRREQQAICKRNKIPSNITKAVIADTLATLPSVEEIKEFFNK------------ 60
           MDF++LSRRE Q +CKRNKIP+NIT   +AD LA LP VE I+EF +             
Sbjct: 1   MDFHSLSRRELQTLCKRNKIPANITNVAMADALAALPLVEGIEEFLSSERSGVPESPMKG 60

Query: 61  -----------------------------------ARGTGESENRDLIVALTTLSFPGGW 96
                                              ARGT ESENRDL VALTT S   G 
Sbjct: 61  EVVSFEIPRTELRTSTRRKTVKDDPITTLTRRAAAARGTEESENRDLNVALTTPSLRSGR 120

[Close]

BLAST of PI0024722 vs. NCBI nr
Match: KAA0055115.1 (putative beta-tubulin polyglutamylase [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 70/142 (49.30%), Postives = 77/142 (54.23%), Query Frame = 0


Query: 1   MDFNTLSRREQQAICKRNKIPSNITKAVIADTLATLPSVEEIKEFFN------------- 60
           MDF+TLSRRE QA+CKRNKIP+NIT   +AD LA L SVE I+EF N             
Sbjct: 1   MDFHTLSRRELQALCKRNKIPANITNVAMADALAALQSVEGIEEFLNGDRSGVPESPMKV 60

Query: 61  ----------------------------------KARGTGESENRDLIVALTTLSFPGGW 96
                                              ARGT ESENRDL +ALTT S PG  
Sbjct: 61  EVISLEIPRTALRTSTRRKAVKDETITIRSRRGAVARGTEESENRDLNMALTTPSLPGSR 120

[Close]

BLAST of PI0024722 vs. NCBI nr
Match: XP_038906922.1 (interaptin-like isoform X1 [Benincasa hispida])

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 71/142 (50.00%), Postives = 76/142 (53.52%), Query Frame = 0


Query: 1   MDFNTLSRREQQAICKRNKIPSNITKAVIADTLATLPSVEEIKEFFN------------- 60
           MDF TLSR+E QA+CKRNKIP+NIT   +AD LA L SVE I+EFFN             
Sbjct: 1   MDFRTLSRKELQALCKRNKIPANITNVAMADALAALSSVEGIEEFFNGERSGVPESPMKP 60

Query: 61  ----------------------------------KARGTGESENRDLIVALTTLSFPGGW 96
                                              AR T ESENRDL VALTT S PG  
Sbjct: 61  EVISSEIPRTALRTSTRRKAVKDEAITTRTRRAAAARDTEESENRDLNVALTTPSLPGSR 120

[Close]

BLAST of PI0024722 vs. NCBI nr
Match: XP_038906923.1 (interaptin-like isoform X2 [Benincasa hispida])

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 71/142 (50.00%), Postives = 76/142 (53.52%), Query Frame = 0


Query: 1   MDFNTLSRREQQAICKRNKIPSNITKAVIADTLATLPSVEEIKEFFN------------- 60
           MDF TLSR+E QA+CKRNKIP+NIT   +AD LA L SVE I+EFFN             
Sbjct: 1   MDFRTLSRKELQALCKRNKIPANITNVAMADALAALSSVEGIEEFFNGERSGVPESPMKP 60

Query: 61  ----------------------------------KARGTGESENRDLIVALTTLSFPGGW 96
                                              AR T ESENRDL VALTT S PG  
Sbjct: 61  EVISSEIPRTALRTSTRRKAVKDEAITTRTRRAAAARDTEESENRDLNVALTTPSLPGSR 120

[Close]

BLAST of PI0024722 vs. NCBI nr
Match: XP_008467303.1 (PREDICTED: probable beta-tubulin polyglutamylase [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-22
Identity = 70/142 (49.30%), Postives = 76/142 (53.52%), Query Frame = 0


Query: 1   MDFNTLSRREQQAICKRNKIPSNITKAVIADTLATLPSVEEIKEFFN------------- 60
           MDF+TLSRRE QA+CKRNKIP+NIT   +AD LA L SVE I+EF N             
Sbjct: 1   MDFHTLSRRELQALCKRNKIPANITNVAMADALAALQSVEGIEEFLNGDRSGVSESPMKV 60

Query: 61  ----------------------------------KARGTGESENRDLIVALTTLSFPGGW 96
                                              ARGT ESENRD  +ALTT S PG  
Sbjct: 61  EVISLEIPRTALRTSTRRKAVKDETITTRSRRGAVARGTEESENRDFNMALTTPSLPGSR 120

[Close]

BLAST of PI0024722 vs. NCBI nr
Match: XP_031742149.1 (probable serine/threonine-protein kinase kinX isoform X1 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 70/142 (49.30%), Postives = 75/142 (52.82%), Query Frame = 0


Query: 1   MDFNTLSRREQQAICKRNKIPSNITKAVIADTLATLPSVEEIKEFFN------------- 60
           MDF TLSRRE QA+CKRNKIP+NIT   +AD LA L SVE I+EF N             
Sbjct: 1   MDFYTLSRRELQALCKRNKIPANITNVAMADALAALQSVEGIEEFLNGDRSGVPESPMKG 60

Query: 61  ----------------------------------KARGTGESENRDLIVALTTLSFPGGW 96
                                              AR T ESENRDL +ALTT S PG  
Sbjct: 61  EVISSEIPRTALRTSTRRKAVKDETITTRSRRGAAARDTEESENRDLNMALTTPSLPGSR 120

[Close]

BLAST of PI0024722 vs. TAIR 10
Match: AT5G17160.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03130.1); Has 14330 Blast hits to 10381 proteins in 896 species: Archae - 94; Bacteria - 2881; Metazoa - 4019; Fungi - 1576; Plants - 515; Viruses - 110; Other Eukaryotes - 5135 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 23/52 (44.23%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 1  MDFNTLSRREQQAICKRNKIPSNITKAVIADTLATLPSVEEIKEFFNKARGT 53
          MDF++L RR+ Q +CKRNKIP+N+T   +AD L +L  V+ + E+ N++  +
Sbjct: 1  MDFHSLLRRDLQFLCKRNKIPANMTNIAMADALKSLEIVDGLDEYMNQSESS 52

[Close]

BLAST of PI0024722 vs. TAIR 10
Match: AT3G03130.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17160.1); Has 7130 Blast hits to 3690 proteins in 504 species: Archae - 22; Bacteria - 2666; Metazoa - 1654; Fungi - 721; Plants - 246; Viruses - 56; Other Eukaryotes - 1765 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.4e-07
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 1  MDFNTLSRREQQAICKRNKIPSNITKAVIADTLATLPSVEEIKEFFNKAR 51
          MDF++L RR+ Q  CKRNKIP+N+T   +AD L  L  VE + EF + +R
Sbjct: 1  MDFHSLPRRDLQFFCKRNKIPANMTNIAMADALRDLEIVEGMDEFMDPSR 50

The following BLAST results are available for this feature:

BLAST of PI0024722 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024722 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG18	3.5e-35	83.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825120 PE=4 SV=1	[more]
A0A5A7UN97	9.0e-23	49.30	Putative beta-tubulin polyglutamylase OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CT90	2.0e-22	49.30	probable beta-tubulin polyglutamylase OS=Cucumis melo OX=3656 GN=LOC103504683 PE...	[more]
A0A0A0KKZ3	1.1e-20	47.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G169010 PE=4 SV=1	[more]
A0A6J1I214	5.5e-20	46.48	uncharacterized protein LOC111469129 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of PI0024722 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055115.1	1.9e-22	49.30	putative beta-tubulin polyglutamylase [Cucumis melo var. makuwa]	[more]
XP_038906922.1	1.9e-22	50.00	interaptin-like isoform X1 [Benincasa hispida]	[more]
XP_038906923.1	1.9e-22	50.00	interaptin-like isoform X2 [Benincasa hispida]	[more]
XP_008467303.1	4.2e-22	49.30	PREDICTED: probable beta-tubulin polyglutamylase [Cucumis melo]	[more]
XP_031742149.1	1.6e-21	49.30	probable serine/threonine-protein kinase kinX isoform X1 [Cucumis sativus]	[more]

BLAST of PI0024722 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17160.1	1.1e-07	44.23	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G03130.1	1.4e-07	50.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33621:SF2	ASPARTIC/GLUTAMIC ACID-RICH PROTEIN	coord: 1..55
None	No IPR available	PANTHER	PTHR33621	ASPARTIC/GLUTAMIC ACID-RICH PROTEIN	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024722.1	PI0024722.1	mRNA