PI0024572 (gene) Melon (PI 482460) v1

Overview


Name	PI0024572
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	SKP1-like protein
Location	chr08: 837584 .. 838653 (+)
RNA-Seq Expression	PI0024572
Synteny	PI0024572

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTGGCCGGAAAATCACCTTGAAGAGCTCCGACGGCGAGATCTTCGAGGTCGACGAAGCGGTCGCCTTGGAGTCACAAACGATCAAGCACATGATCGAAGACGAGTGCGCCGATAGTGGAATCCCCCTTCCTAATGTCAACAGCAAGATCTTGCCCAAGGTTATCGAGTACTGCAAGAAGCACGTCGAGTCCCCTAAGCCCGAGATCGTACTGGCTCCGTCGACGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAGCCACCTTATTTGATCTCATTCTGGTTTGTTCATTCTACTTTTTTTGAGTTCTCTCGCTTTTTTCGTTGCGGGTTTGTCTTTTTGCTTCTCTCTATCTTTGCCCTCTTTTCGATTGCGTATGCATTCGATTGTTTGGTTAAATTTGGGGGTCTAGGGTTTCGATGCTTCTTAGATTGGGGTTAGGGTTTTTGGTACTTACTCTGTGTTTGCATAAACCGTTTTCTGTTTTGTTCTGATGCCTGAATGAGATATCACAATTTTTAAATGGGTATTGCAAAATTACTGAAACGTGAATGCTCCTCCAGTTTTGTTGTCGAATTGGAGTCGATAGAGGAGCTCATTTATTGATTTATAAGGGTTATAAAGATTTTTTCATTGGGTCATTAGGCACTTGTTATGCAGTTTTAATAGCATTCATTTGACTAAGTATATTTTCATTTCCATTTATGTCTTAAGTTGATCCCAATGAAATATGTTGCCGTTCTTTCTAAGTGTTCTTACTTTTCTCCATATTTCTTGTGTCTATTACGAAAAAAATGTTGGATTCATCATATCTGGAAAAAAGATTCTTACAAATGCCCATGTCGTCGCTGATCACACCTTCGTCCTGGTAAGGAAGCATGGTTCACCAACAAAGTATAGGGCAGAAGTTCAAGCTGTGGTCACGAATGTGACCTGGCTATTCTGGTCGTTGATAGTGAAGAATTCTGGGTAGACACCAACTGTTCGGTTTGGGAAATATTCCTATCTTGCAGAAATACCACCAGAGTATCTCTCATATTCAGAGAAACATGA

mRNA sequence

ATGTCTTCTGGCCGGAAAATCACCTTGAAGAGCTCCGACGGCGAGATCTTCGAGGTCGACGAAGCGGTCGCCTTGGAGTCACAAACGATCAAGCACATGATCGAAGACGAGTGCGCCGATAGTGGAATCCCCCTTCCTAATGTCAACAGCAAGATCTTGCCCAAGGTTATCGAGTACTGCAAGAAGCACGTCGAGTCCCCTAAGCCCGAGATCGTACTGGCTCCGTCGACGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAACTGTGGTCACGAATGTGACCTGGCTATTCTGGTCGTTGATAGTGAAGAATTCTGGGTAGACACCAACTGTTCGGTTTGGGAAATATTCCTATCTTGCAGAAATACCACCAGAGTATCTCTCATATTCAGAGAAACATGA

Coding sequence (CDS)

ATGTCTTCTGGCCGGAAAATCACCTTGAAGAGCTCCGACGGCGAGATCTTCGAGGTCGACGAAGCGGTCGCCTTGGAGTCACAAACGATCAAGCACATGATCGAAGACGAGTGCGCCGATAGTGGAATCCCCCTTCCTAATGTCAACAGCAAGATCTTGCCCAAGGTTATCGAGTACTGCAAGAAGCACGTCGAGTCCCCTAAGCCCGAGATCGTACTGGCTCCGTCGACGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAACTGTGGTCACGAATGTGACCTGGCTATTCTGGTCGTTGATAGTGAAGAATTCTGGGTAGACACCAACTGTTCGGTTTGGGAAATATTCCTATCTTGCAGAAATACCACCAGAGTATCTCTCATATTCAGAGAAACATGA

Protein sequence

MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEIVLAPSTTTSRLGTANSSNCGHECDLAILVVDSEEFWVDTNCSVWEIFLSCRNTTRVSLIFRET

Homology

[Close]

BLAST of PI0024572 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-25
Identity = 65/105 (61.90%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYC 60
           MS+ RKITLKSSDGE FE+DEAVALESQTIKHMIED+C D+GIPLPNV SKIL KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVE-SPKPEIV--LAPSTTTSRLGTANSSNCGHECDLAILVVD 103
           K+HVE + K E     A +TTT+ + + +S       D   + VD
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVD 105

[Close]

BLAST of PI0024572 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.7e-22
Identity = 51/78 (65.38%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 3  SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKK 62
          S +KI LKSSDGE FEV+EAVALESQTI HM+ED+C D+G+PLPNV SKIL KVIEYCK+
Sbjct: 2  SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63 HVESPKPEIVLAPSTTTS 81
          HVE+   +        TS
Sbjct: 62 HVEAAASKAEAVEGAATS 79

[Close]

BLAST of PI0024572 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.7e-22
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 5  RKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHV 64
          + ITLKSSDGE FEV+EAVA+ESQTI+HMIED+CAD+GIPLPNVNSKIL KVIEYC KHV
Sbjct: 8  KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 65 ES 67
           +
Sbjct: 68 HA 69

[Close]

BLAST of PI0024572 vs. ExPASy Swiss-Prot
Match: Q9SL93 (SKP1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=ASK3 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.8e-21
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 5  RKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHV 64
          + I LKSSDGE FEV+EAVA+ESQTIKHMIED+C D+GIPLPNV   IL KVIEYCKKHV
Sbjct: 6  KMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHV 65

Query: 65 ES 67
          E+
Sbjct: 66 EA 67

[Close]

BLAST of PI0024572 vs. ExPASy Swiss-Prot
Match: Q9LNT9 (SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-20
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 5  RKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHV 64
          + I LKSSDGE FE++EAVA++SQTIKHMIED+CAD+GIPLPNV   IL KVIEYCKKHV
Sbjct: 6  KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHV 65

Query: 65 ES 67
          E+
Sbjct: 66 EA 67

[Close]

BLAST of PI0024572 vs. ExPASy TrEMBL
Match: A0A6J1KLK5 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111496349 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-29
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYC 60
          MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYC
Sbjct: 1  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60

Query: 61 KKHVESPKPE 71
          KKHVESPKPE
Sbjct: 61 KKHVESPKPE 70

[Close]

BLAST of PI0024572 vs. ExPASy TrEMBL
Match: A0A6J1K9X2 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111491993 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-29
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYC 60
          MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYC
Sbjct: 1  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60

Query: 61 KKHVESPKPE 71
          KKHVESPKPE
Sbjct: 61 KKHVESPKPE 70

[Close]

BLAST of PI0024572 vs. ExPASy TrEMBL
Match: A0A0A0LMK0 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G346050 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-29
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYC 60
          MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYC
Sbjct: 1  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60

Query: 61 KKHVESPKPE 71
          KKHVESPKPE
Sbjct: 61 KKHVESPKPE 70

[Close]

BLAST of PI0024572 vs. ExPASy TrEMBL
Match: A0A6J1GJP4 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111454489 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-29
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYC 60
          MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYC
Sbjct: 1  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60

Query: 61 KKHVESPKPE 71
          KKHVESPKPE
Sbjct: 61 KKHVESPKPE 70

[Close]

BLAST of PI0024572 vs. ExPASy TrEMBL
Match: A0A6J1HGN0 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111462785 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-29
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYC 60
          MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYC
Sbjct: 1  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60

Query: 61 KKHVESPKPE 71
          KKHVESPKPE
Sbjct: 61 KKHVESPKPE 70

[Close]

BLAST of PI0024572 vs. NCBI nr
Match: KAG6585523.1 (SKP1-like protein 1B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.3 bits (347), Expect = 4.9e-29
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYC
Sbjct: 431 MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 490

Query: 61  KKHVESPKPE 71
           KKHVESPKPE
Sbjct: 491 KKHVESPKPE 500

[Close]

BLAST of PI0024572 vs. NCBI nr
Match: XP_022951749.1 (SKP1-like protein 1B [Cucurbita moschata] >XP_023002536.1 SKP1-like protein 1B [Cucurbita maxima] >XP_023538234.1 SKP1-like protein 1B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.3 bits (347), Expect = 4.9e-29
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYC 60
          MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYC
Sbjct: 1  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60

Query: 61 KKHVESPKPE 71
          KKHVESPKPE
Sbjct: 61 KKHVESPKPE 70

[Close]

BLAST of PI0024572 vs. NCBI nr
Match: XP_004143010.1 (SKP1-like protein 1B [Cucumis sativus] >XP_022962289.1 SKP1-like protein 1B [Cucurbita moschata] >XP_022996879.1 SKP1-like protein 1B [Cucurbita maxima] >XP_023546968.1 SKP1-like protein 1B [Cucurbita pepo subsp. pepo] >XP_038886225.1 SKP1-like protein 1B [Benincasa hispida] >KGN62264.1 hypothetical protein Csa_018747 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 4.9e-29
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYC 60
          MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYC
Sbjct: 1  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 60

Query: 61 KKHVESPKPE 71
          KKHVESPKPE
Sbjct: 61 KKHVESPKPE 70

[Close]

BLAST of PI0024572 vs. NCBI nr
Match: KAG7020437.1 (SKP1-like protein 1B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.3 bits (347), Expect = 4.9e-29
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYC 60
           MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYC
Sbjct: 45  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 104

Query: 61  KKHVESPKPE 71
           KKHVESPKPE
Sbjct: 105 KKHVESPKPE 114

[Close]

BLAST of PI0024572 vs. NCBI nr
Match: KAG7029453.1 (SKP1-like protein 1B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-28
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYC 60
           MS+GRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYC
Sbjct: 450 MSAGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYC 509

Query: 61  KKHVESPKPE 71
           KKHVESPKPE
Sbjct: 510 KKHVESPKPE 519

[Close]

BLAST of PI0024572 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 117.5 bits (293), Expect = 8.4e-27
Identity = 65/105 (61.90%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 1   MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYC 60
           MS+ RKITLKSSDGE FE+DEAVALESQTIKHMIED+C D+GIPLPNV SKIL KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVE-SPKPEIV--LAPSTTTSRLGTANSSNCGHECDLAILVVD 103
           K+HVE + K E     A +TTT+ + + +S       D   + VD
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVD 105

[Close]

BLAST of PI0024572 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-23
Identity = 51/78 (65.38%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 3  SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKK 62
          S +KI LKSSDGE FEV+EAVALESQTI HM+ED+C D+G+PLPNV SKIL KVIEYCK+
Sbjct: 2  SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63 HVESPKPEIVLAPSTTTS 81
          HVE+   +        TS
Sbjct: 62 HVEAAASKAEAVEGAATS 79

[Close]

BLAST of PI0024572 vs. TAIR 10
Match: AT2G25700.1 (SKP1-like 3 )

HSP 1 Score: 101.3 bits (251), Expect = 6.2e-22
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 5  RKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHV 64
          + I LKSSDGE FEV+EAVA+ESQTIKHMIED+C D+GIPLPNV   IL KVIEYCKKHV
Sbjct: 6  KMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHV 65

Query: 65 ES 67
          E+
Sbjct: 66 EA 67

[Close]

BLAST of PI0024572 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 100.9 bits (250), Expect = 8.2e-22
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 5  RKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHV 64
          + I LKSSDGE FE++EAVA++SQTIKHMIED+CAD+GIPLPNV   IL KVIEYCKKHV
Sbjct: 6  KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHV 65

Query: 65 ES 67
          E+
Sbjct: 66 EA 67

[Close]

BLAST of PI0024572 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 89.4 bits (220), Expect = 2.5e-18
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 3  SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKK 62
          S + I L SSDG+ FEV+EAVA++SQTI HM+ED+C   GIPL NV SKIL KVIEYCKK
Sbjct: 2  SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63 H 64
          H
Sbjct: 62 H 62

The following BLAST results are available for this feature:

BLAST of PI0024572 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHW7	1.2e-25	61.90	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q39255	2.7e-22	65.38	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q6PL11	2.7e-22	80.65	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q9SL93	8.8e-21	77.42	SKP1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=ASK3 PE=1 SV=1	[more]
Q9LNT9	1.1e-20	75.81	SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1	[more]

BLAST of PI0024572 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLK5	2.4e-29	97.14	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111496349 PE=3 SV=1	[more]
A0A6J1K9X2	2.4e-29	97.14	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111491993 PE=3 SV=1	[more]
A0A0A0LMK0	2.4e-29	97.14	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G346050 PE=3 SV=1	[more]
A0A6J1GJP4	2.4e-29	97.14	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111454489 PE=3 SV=1	[more]
A0A6J1HGN0	2.4e-29	97.14	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111462785 PE=3 SV=1	[more]

BLAST of PI0024572 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585523.1	4.9e-29	97.14	SKP1-like protein 1B, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022951749.1	4.9e-29	97.14	SKP1-like protein 1B [Cucurbita moschata] >XP_023002536.1 SKP1-like protein 1B [...	[more]
XP_004143010.1	4.9e-29	97.14	SKP1-like protein 1B [Cucumis sativus] >XP_022962289.1 SKP1-like protein 1B [Cuc...	[more]
KAG7020437.1	4.9e-29	97.14	SKP1-like protein 1B, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7029453.1	1.1e-28	95.71	SKP1-like protein 1B [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of PI0024572 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42190.1	8.4e-27	61.90	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT1G75950.1	1.9e-23	65.38	S phase kinase-associated protein 1	[more]
AT2G25700.1	6.2e-22	77.42	SKP1-like 3	[more]
AT1G20140.1	8.2e-22	75.81	SKP1-like 4	[more]
AT4G34210.1	2.5e-18	68.85	SKP1-like 11	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..90 e-value: 2.0E-22 score: 90.5
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 6..64 e-value: 5.6E-30 score: 103.3
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 3..115 e-value: 1.2E-26 score: 95.6
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 5..67
None	No IPR available	PANTHER	PTHR11165:SF137	OS02G0101600 PROTEIN	coord: 6..76
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 6..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024572.1	PI0024572.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding