PI0024509 (gene) Melon (PI 482460) v1

Overview
NamePI0024509
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionArabinogalactan protein 20
Locationchr06: 944072 .. 944734 (-)
RNA-Seq ExpressionPI0024509
SyntenyPI0024509
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCGCCCCACTACTCTGCTCTCCTTCTTCAAACCATTTGGATTTTGATCAGAGTTTCCACACAAATTCCCTTCCTTTTGGAGAAGGAGAATTCAACCATCCATCAATGGCGTCTTCCAATTCTACTTTTAGGGCTTTTAAAGCTCTCTTCACCTTCTTCTCCCTCATCTTCTTCATTCTTTCTCCACTCGTTGACGCAGCCCCTGCTCCCGCTCCTTCTAGCGACGGTATCTACCTACATTTCTTGTCTATGCATTCTCCTTCTGTTCTTTGTTGATTGACACTGGATAATCTAGGTCTTGCTTTCAAATTATTAGGGTTAGGGATTTTTGTTGTGAGAAGTAGGGAAATAATGTTGATTTTGTAATTTTGAAAACAGGGACCTCCATTGATCAGGGAATTGCGTACGTTCTGATGCTAGTGGCGTTGGTTCTCACGTATCTAATTCACCCTCTCGATGCATCTTCTTACAATTTTTTCTGAATTGAATTGAATTGAATTCTTCTTCCTAGGATTGTAGCAATGTAGGCGATGTTTGTGGATGTTTGAGAAGGAACGAGACCCAACTTTTTCTTCTCTCTTTTTGTGATAAAATCAAAGTGTATATTTGGGTTTCGCAGATTTTGAACAATTGCTCCATTTAATTCATTGTTTATTCGATTA

mRNA sequence

CTCCGCCCCACTACTCTGCTCTCCTTCTTCAAACCATTTGGATTTTGATCAGAGTTTCCACACAAATTCCCTTCCTTTTGGAGAAGGAGAATTCAACCATCCATCAATGGCGTCTTCCAATTCTACTTTTAGGGCTTTTAAAGCTCTCTTCACCTTCTTCTCCCTCATCTTCTTCATTCTTTCTCCACTCGTTGACGCAGCCCCTGCTCCCGCTCCTTCTAGCGACGGGACCTCCATTGATCAGGGAATTGCGTACGTTCTGATGCTAGTGGCGTTGGTTCTCACGTATCTAATTCACCCTCTCGATGCATCTTCTTACAATTTTTTCTGAATTGAATTGAATTGAATTCTTCTTCCTAGGATTGTAGCAATGTAGGCGATGTTTGTGGATGTTTGAGAAGGAACGAGACCCAACTTTTTCTTCTCTCTTTTTGTGATAAAATCAAAGTGTATATTTGGGTTTCGCAGATTTTGAACAATTGCTCCATTTAATTCATTGTTTATTCGATTA

Coding sequence (CDS)

ATGGCGTCTTCCAATTCTACTTTTAGGGCTTTTAAAGCTCTCTTCACCTTCTTCTCCCTCATCTTCTTCATTCTTTCTCCACTCGTTGACGCAGCCCCTGCTCCCGCTCCTTCTAGCGACGGGACCTCCATTGATCAGGGAATTGCGTACGTTCTGATGCTAGTGGCGTTGGTTCTCACGTATCTAATTCACCCTCTCGATGCATCTTCTTACAATTTTTTCTGA

Protein sequence

MASSNSTFRAFKALFTFFSLIFFILSPLVDAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF
Homology
BLAST of PI0024509 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.1e-16
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 0

Query: 1  MASSNSTFRAFKALFTFFSLIFFILSPLVDA---APAPAPSSDGTSIDQGIAYVLMLVAL 60
          MAS NS      A+   F+ +F ++SP   A   APAP+P+SDGTSIDQGIAY+LM+VAL
Sbjct: 1  MASRNSV-----AVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVAL 60

Query: 61 VLTYLIHPLDA--SSYNFF 75
          VLTYLIHPLDA  SSY FF
Sbjct: 61 VLTYLIHPLDASSSSYTFF 74

BLAST of PI0024509 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-15
Identity = 49/75 (65.33%), Postives = 56/75 (74.67%), Query Frame = 0

Query: 1  MASSNSTFRAFKALFTFFSLIFFILSPLVDAAPAPAPSSDGTSIDQGIAYVLMLVALVLT 60
          MAS NS      ALF+F   +   L+     APAPAP+SDGTSIDQGIAY+LM+VALVLT
Sbjct: 1  MASRNSV--TGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLT 60

Query: 61 YLIHPLDA-SSYNFF 75
          YLIHPLDA SSY+FF
Sbjct: 61 YLIHPLDASSSYSFF 73

BLAST of PI0024509 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-12
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 9  RAFKALFTFFSLIFFILSPLV---DAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH 65
          R F  + T  S+IF IL P+     AAPAPAP+SDGT+IDQGIAYVLMLVALVLTYLIH
Sbjct: 5  RLFFGVSTIVSIIFAILLPMAHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

BLAST of PI0024509 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-09
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 0

Query: 13 ALFTFFSLIFFILSPLVDAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH 65
          A+F   S+I   ++    ++PAPAP+SDGTSIDQGIAYVLM+VAL LTY IH
Sbjct: 12 AVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

BLAST of PI0024509 vs. ExPASy TrEMBL
Match: A0A0A0L7A0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120410 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-26
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = 0

Query: 1  MASSNSTFRAFKALFTFFSLIFFILSPLVDA--APAPAPSSDGTSIDQGIAYVLMLVALV 60
          M S NST RAFKALFTFFSLIFFILSPLVDA  APAPAPSSDGTSIDQGIAYVLML+ALV
Sbjct: 1  MESFNSTSRAFKALFTFFSLIFFILSPLVDATPAPAPAPSSDGTSIDQGIAYVLMLLALV 60

Query: 61 LTYLIHPLDASSYNFF 75
          LTYLIHPLDASSYNFF
Sbjct: 61 LTYLIHPLDASSYNFF 76

BLAST of PI0024509 vs. ExPASy TrEMBL
Match: A0A6J1E8M6 (arabinogalactan peptide 16-like OS=Cucurbita moschata OX=3662 GN=LOC111431859 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.4e-25
Identity = 67/81 (82.72%), Postives = 70/81 (86.42%), Query Frame = 0

Query: 1  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-------APAPAPSSDGTSIDQGIAYVLM 60
          MASSNST RAF  LFTFF+LI FILSPLVDA       APAPAP+SDGTSIDQG+AYVLM
Sbjct: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPAPASDGTSIDQGVAYVLM 60

Query: 61 LVALVLTYLIHPLDASSYNFF 75
          LVALVLTYLIHPLDASSYNFF
Sbjct: 61 LVALVLTYLIHPLDASSYNFF 81

BLAST of PI0024509 vs. ExPASy TrEMBL
Match: A0A6J1IQM6 (arabinogalactan peptide 20-like OS=Cucurbita maxima OX=3661 GN=LOC111479127 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.8e-25
Identity = 66/81 (81.48%), Postives = 70/81 (86.42%), Query Frame = 0

Query: 1  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-------APAPAPSSDGTSIDQGIAYVLM 60
          MASSNSTFRAF  LFTFF+LI FILSPL+DA       APAPAP+SDGTSIDQG+AYVLM
Sbjct: 1  MASSNSTFRAFSGLFTFFTLILFILSPLIDAHSSVPSPAPAPAPASDGTSIDQGVAYVLM 60

Query: 61 LVALVLTYLIHPLDASSYNFF 75
          LVALVLTYLIHPLDASS NFF
Sbjct: 61 LVALVLTYLIHPLDASSNNFF 81

BLAST of PI0024509 vs. ExPASy TrEMBL
Match: A0A6J1D1D7 (arabinogalactan peptide 20-like OS=Momordica charantia OX=3673 GN=LOC111016381 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 65/79 (82.28%), Postives = 70/79 (88.61%), Query Frame = 0

Query: 1  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-----APAPAPSSDGTSIDQGIAYVLMLV 60
          MASS ST RAF +LFT F+LIFFI+SPLVDA     APAPAP+SDGTSIDQGIAYVLML+
Sbjct: 1  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLL 60

Query: 61 ALVLTYLIHPLDASSYNFF 75
          ALVLTYLIHPLDASSYNFF
Sbjct: 61 ALVLTYLIHPLDASSYNFF 79

BLAST of PI0024509 vs. ExPASy TrEMBL
Match: A0A6J1F1F2 (arabinogalactan peptide 20-like OS=Cucurbita moschata OX=3662 GN=LOC111441255 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 60/78 (76.92%), Postives = 65/78 (83.33%), Query Frame = 0

Query: 2  ASSNSTFRAFKALFTFFSLIFFILSPLVDA-----APAPAPSSDGTSIDQGIAYVLMLVA 61
          +SS+ST  AF   FT F+LIFFILSPLV A     APAPAP+SDGTSIDQGIAYVLML+A
Sbjct: 4  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMA 63

Query: 62 LVLTYLIHPLDASSYNFF 75
          LVLTYLIHPLDASSY FF
Sbjct: 64 LVLTYLIHPLDASSYQFF 81

BLAST of PI0024509 vs. NCBI nr
Match: XP_004133836.1 (arabinogalactan protein 41 [Cucumis sativus] >KGN56462.1 hypothetical protein Csa_011333 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 2.2e-26
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = 0

Query: 1  MASSNSTFRAFKALFTFFSLIFFILSPLVDA--APAPAPSSDGTSIDQGIAYVLMLVALV 60
          M S NST RAFKALFTFFSLIFFILSPLVDA  APAPAPSSDGTSIDQGIAYVLML+ALV
Sbjct: 1  MESFNSTSRAFKALFTFFSLIFFILSPLVDATPAPAPAPSSDGTSIDQGIAYVLMLLALV 60

Query: 61 LTYLIHPLDASSYNFF 75
          LTYLIHPLDASSYNFF
Sbjct: 61 LTYLIHPLDASSYNFF 76

BLAST of PI0024509 vs. NCBI nr
Match: XP_038905636.1 (arabinogalactan protein 41-like [Benincasa hispida])

HSP 1 Score: 124.4 bits (311), Expect = 4.1e-25
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 0

Query: 1  MASSNSTFRAFKALFTFFSLIFFILSPLVDA--APAPAPSSDGTSIDQGIAYVLMLVALV 60
          M SSNST RAF  LFTFF+LIFFILSPLVDA  APAPAP+SDGTSIDQGIAYVLMLVALV
Sbjct: 1  MESSNSTSRAFSGLFTFFALIFFILSPLVDAAPAPAPAPASDGTSIDQGIAYVLMLVALV 60

Query: 61 LTYLIHPLDASSYNFF 75
          LTYLIHPLDASSY+FF
Sbjct: 61 LTYLIHPLDASSYSFF 76

BLAST of PI0024509 vs. NCBI nr
Match: XP_023528757.1 (arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo] >KAG7019041.1 Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.4 bits (311), Expect = 4.1e-25
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 0

Query: 1  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-----APAPAPSSDGTSIDQGIAYVLMLV 60
          MASSNST RAF  LFTFF+LI FILSPLVDA     APAPAP+SDGTSIDQG+AYVLMLV
Sbjct: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLV 60

Query: 61 ALVLTYLIHPLDASSYNFF 75
          ALVLTYLIHPLDASSYNFF
Sbjct: 61 ALVLTYLIHPLDASSYNFF 79

BLAST of PI0024509 vs. NCBI nr
Match: XP_022924337.1 (arabinogalactan peptide 16-like [Cucurbita moschata] >KAG6582645.1 Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 7.0e-25
Identity = 67/81 (82.72%), Postives = 70/81 (86.42%), Query Frame = 0

Query: 1  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-------APAPAPSSDGTSIDQGIAYVLM 60
          MASSNST RAF  LFTFF+LI FILSPLVDA       APAPAP+SDGTSIDQG+AYVLM
Sbjct: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPAPASDGTSIDQGVAYVLM 60

Query: 61 LVALVLTYLIHPLDASSYNFF 75
          LVALVLTYLIHPLDASSYNFF
Sbjct: 61 LVALVLTYLIHPLDASSYNFF 81

BLAST of PI0024509 vs. NCBI nr
Match: XP_022979386.1 (arabinogalactan peptide 20-like [Cucurbita maxima])

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-24
Identity = 66/81 (81.48%), Postives = 70/81 (86.42%), Query Frame = 0

Query: 1  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-------APAPAPSSDGTSIDQGIAYVLM 60
          MASSNSTFRAF  LFTFF+LI FILSPL+DA       APAPAP+SDGTSIDQG+AYVLM
Sbjct: 1  MASSNSTFRAFSGLFTFFTLILFILSPLIDAHSSVPSPAPAPAPASDGTSIDQGVAYVLM 60

Query: 61 LVALVLTYLIHPLDASSYNFF 75
          LVALVLTYLIHPLDASS NFF
Sbjct: 61 LVALVLTYLIHPLDASSNNFF 81

BLAST of PI0024509 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 84.3 bits (207), Expect = 4.4e-17
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 0

Query: 1  MASSNSTFRAFKALFTFFSLIFFILSPLVDA---APAPAPSSDGTSIDQGIAYVLMLVAL 60
          MAS NS      A+   F+ +F ++SP   A   APAP+P+SDGTSIDQGIAY+LM+VAL
Sbjct: 1  MASRNSV-----AVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVAL 60

Query: 61 VLTYLIHPLDA--SSYNFF 75
          VLTYLIHPLDA  SSY FF
Sbjct: 61 VLTYLIHPLDASSSSYTFF 74

BLAST of PI0024509 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 82.0 bits (201), Expect = 2.2e-16
Identity = 49/75 (65.33%), Postives = 56/75 (74.67%), Query Frame = 0

Query: 1  MASSNSTFRAFKALFTFFSLIFFILSPLVDAAPAPAPSSDGTSIDQGIAYVLMLVALVLT 60
          MAS NS      ALF+F   +   L+     APAPAP+SDGTSIDQGIAY+LM+VALVLT
Sbjct: 1  MASRNSV--TGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLT 60

Query: 61 YLIHPLDA-SSYNFF 75
          YLIHPLDA SSY+FF
Sbjct: 61 YLIHPLDASSSYSFF 73

BLAST of PI0024509 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-13
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 9  RAFKALFTFFSLIFFILSPLV---DAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH 65
          R F  + T  S+IF IL P+     AAPAPAP+SDGT+IDQGIAYVLMLVALVLTYLIH
Sbjct: 5  RLFFGVSTIVSIIFAILLPMAHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

BLAST of PI0024509 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-10
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 0

Query: 13 ALFTFFSLIFFILSPLVDAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH 65
          A+F   S+I   ++    ++PAPAP+SDGTSIDQGIAYVLM+VAL LTY IH
Sbjct: 12 AVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9M3736.1e-1662.03Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1[more]
O823373.0e-1565.33Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1[more]
Q8L9T82.4e-1269.49Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1[more]
Q9FK161.5e-0961.54Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L7A01.0e-2692.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120410 PE=4 SV=1[more]
A0A6J1E8M63.4e-2582.72arabinogalactan peptide 16-like OS=Cucurbita moschata OX=3662 GN=LOC111431859 PE... [more]
A0A6J1IQM65.8e-2581.48arabinogalactan peptide 20-like OS=Cucurbita maxima OX=3661 GN=LOC111479127 PE=4... [more]
A0A6J1D1D71.1e-2382.28arabinogalactan peptide 20-like OS=Momordica charantia OX=3673 GN=LOC111016381 P... [more]
A0A6J1F1F21.5e-2076.92arabinogalactan peptide 20-like OS=Cucurbita moschata OX=3662 GN=LOC111441255 PE... [more]
Match NameE-valueIdentityDescription
XP_004133836.12.2e-2692.11arabinogalactan protein 41 [Cucumis sativus] >KGN56462.1 hypothetical protein Cs... [more]
XP_038905636.14.1e-2588.16arabinogalactan protein 41-like [Benincasa hispida][more]
XP_023528757.14.1e-2584.81arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo] >KAG7019041.1 Arabi... [more]
XP_022924337.17.0e-2582.72arabinogalactan peptide 16-like [Cucurbita moschata] >KAG6582645.1 Arabinogalact... [more]
XP_022979386.11.2e-2481.48arabinogalactan peptide 20-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT3G61640.14.4e-1762.03arabinogalactan protein 20 [more]
AT2G46330.12.2e-1665.33arabinogalactan protein 16 [more]
AT5G24105.11.7e-1369.49arabinogalactan protein 41 [more]
AT5G53250.11.0e-1061.54arabinogalactan protein 22 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009424Arabinogalactan protein 16/20/22/41PFAMPF06376AGPcoord: 32..64
e-value: 2.1E-18
score: 65.9
IPR009424Arabinogalactan protein 16/20/22/41PANTHERPTHR33374ARABINOGALACTAN PROTEIN 20coord: 1..71
NoneNo IPR availablePANTHERPTHR33374:SF38ARABINOGALACTAN PROTEIN 41coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0024509.1PI0024509.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane