Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAACAGGGATATTAAGGATGTTCTTGTCAAACGCTTTTTTCAAGAAATGTCCTTCATGTCAAATTGCAAAGCAATGTTGCATGCAGGAAGTTATGATCCAGAAGCAATAATTGATTCCAACATACAACCTATGATTTTCCCGTTGCACGTATCATATAATGGTGATACAGTGATATGTGGAATGGAAGGCATGGCAAAAACTGCAGTAGCCACTCTGTATGCAACAGATTTAATTGGTCATATGACAATGATTGGAGACAACCTTTAGATAATCCTACAAGCTTTTACTTGGTCCAAGAAAGACAGTACCGTTTCATGAGCTATTGGGGCCTCAACAAGCGTGGAGGTGGTGAAAAAGGGACCAATATTATGAGAAACCATAGTACAATTCTACCCTCCAAAAGGTATTACATATCCTTTGAAAATTTGGATGATAGAGTATATAGATTTGTAACTGCATGGGCTATAGCAAAGCCTCGTTGGATTGAGATTTACAGATTTGAAGATCATGATGTTGCAAAAAATTATCATTTTGTTATTAGAAGGGTTGATCCATCCTTATGGCATCCCTGGGGTTGA
mRNA sequence
ATGGCAAACAGGGATATTAAGGATGTTCTTGTCAAACGCTTTTTTCAAGAAATGTCCTTCATGTCAAATTGCAAAGCAATGTTGCATGCAGGAAGTTATGATCCAGAAGCAATAATTGATTCCAACATACAACCTATGATTTTCCCGTTGCACGTATCATATAATGGTGATACAGTGATATGTGGAATGGAAGGCATGGCAAAAACTGCAGTAGCCACTCTACAACCTTTAGATAATCCTACAAGCTTTTACTTGGTCCAAGAAAGACAGTACCGTTTCATGAGCTATTGGGGCCTCAACAAGCGTGGAGGTGGTGAAAAAGGGACCAATATTATGAGAAACCATAGTACAATTCTACCCTCCAAAAGGTATTACATATCCTTTGAAAATTTGGATGATAGAGTATATAGATTTGTAACTGCATGGGCTATAGCAAAGCCTCGTTGGATTGAGATTTACAGATTTGAAGATCATGATGTTGCAAAAAATTATCATTTTGTTATTAGAAGGGTTGATCCATCCTTATGGCATCCCTGGGGTTGA
Coding sequence (CDS)
ATGGCAAACAGGGATATTAAGGATGTTCTTGTCAAACGCTTTTTTCAAGAAATGTCCTTCATGTCAAATTGCAAAGCAATGTTGCATGCAGGAAGTTATGATCCAGAAGCAATAATTGATTCCAACATACAACCTATGATTTTCCCGTTGCACGTATCATATAATGGTGATACAGTGATATGTGGAATGGAAGGCATGGCAAAAACTGCAGTAGCCACTCTACAACCTTTAGATAATCCTACAAGCTTTTACTTGGTCCAAGAAAGACAGTACCGTTTCATGAGCTATTGGGGCCTCAACAAGCGTGGAGGTGGTGAAAAAGGGACCAATATTATGAGAAACCATAGTACAATTCTACCCTCCAAAAGGTATTACATATCCTTTGAAAATTTGGATGATAGAGTATATAGATTTGTAACTGCATGGGCTATAGCAAAGCCTCGTTGGATTGAGATTTACAGATTTGAAGATCATGATGTTGCAAAAAATTATCATTTTGTTATTAGAAGGGTTGATCCATCCTTATGGCATCCCTGGGGTTGA
Protein sequence
MANRDIKDVLVKRFFQEMSFMSNCKAMLHAGSYDPEAIIDSNIQPMIFPLHVSYNGDTVICGMEGMAKTAVATLQPLDNPTSFYLVQERQYRFMSYWGLNKRGGGEKGTNIMRNHSTILPSKRYYISFENLDDRVYRFVTAWAIAKPRWIEIYRFEDHDVAKNYHFVIRRVDPSLWHPWG
Homology
BLAST of PI0024413 vs. ExPASy TrEMBL
Match:
A0A0A0LGC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G022770 PE=4 SV=1)
HSP 1 Score: 313.9 bits (803), Expect = 4.3e-82
Identity = 148/193 (76.68%), Postives = 164/193 (84.97%), Query Frame = 0
Query: 1 MANRDIKDVLVKRFFQEMSFMSNCKAMLHAGSYDPEAIIDSNIQPMIFPLHVSYNGDTVI 60
MA+RDI+D+LVKRFF+EMS +SNCKAMLHAGSY PEAII SN+QPM+FPLHVSYNGDTVI
Sbjct: 1 MAHRDIEDLLVKRFFEEMSSLSNCKAMLHAGSYAPEAIIGSNVQPMVFPLHVSYNGDTVI 60
Query: 61 CGMEGMAKTAVAT--------------LQPLDNPTSFYLVQERQYRFMSYWGLNKRGGGE 120
CGMEGMAKTA+A QPLDNPTSFYLV+E QYRFM Y GL+KRGG +
Sbjct: 61 CGMEGMAKTALANSVCNKFNWSYDNDWRQPLDNPTSFYLVEESQYRFMRYSGLDKRGGCK 120
Query: 121 KGTNIMRNHSTILPSKRYYISFENLDDRVYRFVTAWAIAKPRWIEIYRFEDHDVAKNYHF 180
KGTNI+ NHSTI SK YYI FENLDDRVYRFV+AWAIAKPRWIEIYRFEDHDVA+N+HF
Sbjct: 121 KGTNIIANHSTITSSKMYYIYFENLDDRVYRFVSAWAIAKPRWIEIYRFEDHDVARNHHF 180
BLAST of PI0024413 vs. ExPASy TrEMBL
Match:
E5GB33 (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 204.9 bits (520), Expect = 2.8e-49
Identity = 109/178 (61.24%), Postives = 125/178 (70.22%), Query Frame = 0
Query: 5 DIKDVLVKRFFQEMSFMSNCKA-MLHAGSYDPEAIIDSNIQPMIFPLHVSYNGDTVICGM 64
DI+ +L+KRFF+EMS SNCKA M HA +YDPE +C
Sbjct: 1237 DIEHLLLKRFFEEMSCWSNCKAIMFHAANYDPET--------------------NSVCHR 1296
Query: 65 EGMAKTAVATLQPLDNPTSFYLVQERQYRFMSYWGLNKRGGGEKGTNIM-RNHSTILPSK 124
+ + QPLD+P SFY VQERQYRFMSY GL+ RGGGEK TNI+ NHSTIL SK
Sbjct: 1297 FNWSDD-IDWRQPLDDPISFYWVQERQYRFMSYSGLDNRGGGEKVTNIITNNHSTILSSK 1356
Query: 125 RYYI-SFENLDDRVYRFVTAWAIAKPRWIEIYRFEDHDVAKNYHFVIRRVDPSLWHPW 180
RYYI F+NLDDRVYRF+TAWAIAKPRWIEIYR+ DHDVA+N HFVI+RVDPSLW PW
Sbjct: 1357 RYYILYFKNLDDRVYRFLTAWAIAKPRWIEIYRY-DHDVARNCHFVIKRVDPSLWQPW 1392
BLAST of PI0024413 vs. ExPASy TrEMBL
Match:
A0A1S3BZ02 (LOW QUALITY PROTEIN: disease resistance protein RPP4-like OS=Cucumis melo OX=3656 GN=LOC103494972 PE=4 SV=1)
HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42
Identity = 98/191 (51.31%), Postives = 124/191 (64.92%), Query Frame = 0
Query: 1 MANRDIKDVLVKRFFQEMSFMSNCKAMLHAGSYDPEAIIDSNIQPMIFPLHVSYNGDTVI 60
+ N DI+DVLVKRFFQE+S +SN +AMLHA SYDPEA++DSNIQPM+FPLH++YNGDTVI
Sbjct: 777 LQNLDIEDVLVKRFFQELSCLSNSQAMLHAASYDPEAVVDSNIQPMVFPLHLTYNGDTVI 836
Query: 61 CGMEGMAKTAVATL--------------QPLDNPTSFYLVQERQYRFMSYWGLNKRGGGE 120
GMEGM +T VA + LDN TS +LV+ R+ ++SY K
Sbjct: 837 RGMEGMGETTVANCLCNKFNWIKGHPYREALDNSTSCFLVRGRKLHYLSYLSPRKH---- 896
Query: 121 KGTNIMRNHSTILPSKRYYISFENLDDRVYRFVTAWAIAKPRWIEIYRFEDHD-VAKNYH 177
GTNI + + SK YYI+FENLD R +R + AW A+ RWI + HD V YH
Sbjct: 897 -GTNITTH---TVSSKSYYITFENLDYREFRNLRAWVKAQRRWIR-FDVGSHDFVVNKYH 956
BLAST of PI0024413 vs. ExPASy TrEMBL
Match:
A0A1S3BZ32 (TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494963 PE=4 SV=1)
HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33
Identity = 92/195 (47.18%), Postives = 114/195 (58.46%), Query Frame = 0
Query: 1 MANRDIKDVLVKRFFQEMSFMSNCKAMLHAGSYDPEAIIDSNIQPMIFPLHVSYNGDTVI 60
+ N DI+D+LVKR F E+S++SNCKA+LHAGSYDP I DSNIQPMIFPLHV+Y+G TVI
Sbjct: 960 LQNLDIEDILVKRLFDELSYLSNCKAVLHAGSYDPIVITDSNIQPMIFPLHVTYSGYTVI 1019
Query: 61 CGMEGMAKTAVATL--------------QPLDNPTSFYLVQERQYR-FMSYWGLNKRGGG 120
GMEGM KTA+A Q L++ + FYL+Q R+ R F Y +KR
Sbjct: 1020 SGMEGMGKTALANSLRNKFKRKDNSNWGQCLNDSSRFYLLQGRKSRIFSGYANPSKR--- 1079
Query: 121 EKGTNIMRNHSTILPSKRYYISFENLDDRVYRFVTAWAIAKPRWIEIYRFEDHDVAKNYH 180
I + YYI+F NLD + V AW A+ RWI I + + H
Sbjct: 1080 -----------RISSKRYYYITFVNLDVIEAQNVNAWFTAQ-RWI-ICCSPLESLRRCSH 1138
BLAST of PI0024413 vs. ExPASy TrEMBL
Match:
A0A1S3BZQ4 (TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494963 PE=4 SV=1)
HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33
Identity = 92/195 (47.18%), Postives = 114/195 (58.46%), Query Frame = 0
Query: 1 MANRDIKDVLVKRFFQEMSFMSNCKAMLHAGSYDPEAIIDSNIQPMIFPLHVSYNGDTVI 60
+ N DI+D+LVKR F E+S++SNCKA+LHAGSYDP I DSNIQPMIFPLHV+Y+G TVI
Sbjct: 1113 LQNLDIEDILVKRLFDELSYLSNCKAVLHAGSYDPIVITDSNIQPMIFPLHVTYSGYTVI 1172
Query: 61 CGMEGMAKTAVATL--------------QPLDNPTSFYLVQERQYR-FMSYWGLNKRGGG 120
GMEGM KTA+A Q L++ + FYL+Q R+ R F Y +KR
Sbjct: 1173 SGMEGMGKTALANSLRNKFKRKDNSNWGQCLNDSSRFYLLQGRKSRIFSGYANPSKR--- 1232
Query: 121 EKGTNIMRNHSTILPSKRYYISFENLDDRVYRFVTAWAIAKPRWIEIYRFEDHDVAKNYH 180
I + YYI+F NLD + V AW A+ RWI I + + H
Sbjct: 1233 -----------RISSKRYYYITFVNLDVIEAQNVNAWFTAQ-RWI-ICCSPLESLRRCSH 1291
BLAST of PI0024413 vs. NCBI nr
Match:
XP_011650108.2 (TMV resistance protein N [Cucumis sativus])
HSP 1 Score: 310.1 bits (793), Expect = 1.3e-80
Identity = 146/193 (75.65%), Postives = 162/193 (83.94%), Query Frame = 0
Query: 1 MANRDIKDVLVKRFFQEMSFMSNCKAMLHAGSYDPEAIIDSNIQPMIFPLHVSYNGDTVI 60
+ N DI+D+LVKRFF+EMS +SNCKAMLHAGSY PEAII SN+QPM+FPLHVSYNGDTVI
Sbjct: 1044 LQNLDIEDLLVKRFFEEMSSLSNCKAMLHAGSYAPEAIIGSNVQPMVFPLHVSYNGDTVI 1103
Query: 61 CGMEGMAKTAVAT--------------LQPLDNPTSFYLVQERQYRFMSYWGLNKRGGGE 120
CGMEGMAKTA+A QPLDNPTSFYLV+E QYRFM Y GL+KRGG +
Sbjct: 1104 CGMEGMAKTALANSVCNKFNWSYDNDWRQPLDNPTSFYLVEESQYRFMRYSGLDKRGGCK 1163
Query: 121 KGTNIMRNHSTILPSKRYYISFENLDDRVYRFVTAWAIAKPRWIEIYRFEDHDVAKNYHF 180
KGTNI+ NHSTI SK YYI FENLDDRVYRFV+AWAIAKPRWIEIYRFEDHDVA+N+HF
Sbjct: 1164 KGTNIIANHSTITSSKMYYIYFENLDDRVYRFVSAWAIAKPRWIEIYRFEDHDVARNHHF 1223
BLAST of PI0024413 vs. NCBI nr
Match:
KAE8651600.1 (hypothetical protein Csa_023480 [Cucumis sativus])
HSP 1 Score: 292.4 bits (747), Expect = 2.8e-75
Identity = 140/184 (76.09%), Postives = 156/184 (84.78%), Query Frame = 0
Query: 1 MANRDIKDVLVKRFFQEMSFMSNCKAMLHAGSYDPEAIIDSNIQPMIFPLHVSYNGDTVI 60
MA+RDI+D+LVKRFF+EMS +SNCKAMLHAGSY PEAII SN+QPM+FPLHVSYNGDTVI
Sbjct: 1 MAHRDIEDLLVKRFFEEMSSLSNCKAMLHAGSYAPEAIIGSNVQPMVFPLHVSYNGDTVI 60
Query: 61 CGMEGMAKTAVAT--------------LQPLDNPTSFYLVQERQYRFMSYWGLNKRGGGE 120
CGMEGMAKTA+A QPLDNPTSFYLV+E QYRFM Y GL+KRGG +
Sbjct: 61 CGMEGMAKTALANSVCNKFNWSYDNDWRQPLDNPTSFYLVEESQYRFMRYSGLDKRGGCK 120
Query: 121 KGTNIMRNHSTILPSKRYYISFENLDDRVYRFVTAWAIAKPRWIEIYRFEDHDVAKNYHF 171
KGTNI+ NHSTI SK YYI FENLDDRVYRFV+AWAIAKPRWIEIYRFEDHDVA+N+HF
Sbjct: 121 KGTNIIANHSTITSSKMYYIYFENLDDRVYRFVSAWAIAKPRWIEIYRFEDHDVARNHHF 180
BLAST of PI0024413 vs. NCBI nr
Match:
ADN33675.1 (TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo])
HSP 1 Score: 204.9 bits (520), Expect = 5.8e-49
Identity = 109/178 (61.24%), Postives = 125/178 (70.22%), Query Frame = 0
Query: 5 DIKDVLVKRFFQEMSFMSNCKA-MLHAGSYDPEAIIDSNIQPMIFPLHVSYNGDTVICGM 64
DI+ +L+KRFF+EMS SNCKA M HA +YDPE +C
Sbjct: 1237 DIEHLLLKRFFEEMSCWSNCKAIMFHAANYDPET--------------------NSVCHR 1296
Query: 65 EGMAKTAVATLQPLDNPTSFYLVQERQYRFMSYWGLNKRGGGEKGTNIM-RNHSTILPSK 124
+ + QPLD+P SFY VQERQYRFMSY GL+ RGGGEK TNI+ NHSTIL SK
Sbjct: 1297 FNWSDD-IDWRQPLDDPISFYWVQERQYRFMSYSGLDNRGGGEKVTNIITNNHSTILSSK 1356
Query: 125 RYYI-SFENLDDRVYRFVTAWAIAKPRWIEIYRFEDHDVAKNYHFVIRRVDPSLWHPW 180
RYYI F+NLDDRVYRF+TAWAIAKPRWIEIYR+ DHDVA+N HFVI+RVDPSLW PW
Sbjct: 1357 RYYILYFKNLDDRVYRFLTAWAIAKPRWIEIYRY-DHDVARNCHFVIKRVDPSLWQPW 1392
BLAST of PI0024413 vs. NCBI nr
Match:
XP_038877835.1 (LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida])
HSP 1 Score: 184.5 bits (467), Expect = 8.1e-43
Identity = 101/191 (52.88%), Postives = 124/191 (64.92%), Query Frame = 0
Query: 1 MANRDIKDVLVKRFFQEMSFMSNCKAMLHAGSYDPEAIIDSNIQPMIFPLHVSYNGDTVI 60
+ N DI+DVLVKRFFQE+S +CKAMLHAGSYDPEAIIDSNIQPMIFPLHV+YNG T I
Sbjct: 1162 LQNLDIEDVLVKRFFQEISCKLSCKAMLHAGSYDPEAIIDSNIQPMIFPLHVTYNGATAI 1221
Query: 61 CGMEGMAKTAVAT--------------LQPLDNPTSFYLVQERQYRFMSYWGLNKRGGGE 120
CGMEGM TA+A + LD PTSF+ V+ R + + +KRG GE
Sbjct: 1222 CGMEGMGDTALANSLCNKFKWLKDHPYREALDIPTSFFEVKGGDPRSLFWSFPHKRGDGE 1281
Query: 121 KGTNIMRNHSTILPSKRYYISFENLDDRVYRFVTAWAI-AKPRWIEIYRFEDHDVAKNYH 177
+GT+ +++H+ + SKRY I+F NLDDR W I AK WI I+ +NY
Sbjct: 1282 RGTS-LKSHT--ISSKRYLITFRNLDDRECSDAYEWVITAKRSWISIHLAGSDSFGRNYS 1341
BLAST of PI0024413 vs. NCBI nr
Match:
XP_008454602.1 (PREDICTED: LOW QUALITY PROTEIN: disease resistance protein RPP4-like [Cucumis melo])
HSP 1 Score: 182.2 bits (461), Expect = 4.0e-42
Identity = 98/191 (51.31%), Postives = 124/191 (64.92%), Query Frame = 0
Query: 1 MANRDIKDVLVKRFFQEMSFMSNCKAMLHAGSYDPEAIIDSNIQPMIFPLHVSYNGDTVI 60
+ N DI+DVLVKRFFQE+S +SN +AMLHA SYDPEA++DSNIQPM+FPLH++YNGDTVI
Sbjct: 777 LQNLDIEDVLVKRFFQELSCLSNSQAMLHAASYDPEAVVDSNIQPMVFPLHLTYNGDTVI 836
Query: 61 CGMEGMAKTAVATL--------------QPLDNPTSFYLVQERQYRFMSYWGLNKRGGGE 120
GMEGM +T VA + LDN TS +LV+ R+ ++SY K
Sbjct: 837 RGMEGMGETTVANCLCNKFNWIKGHPYREALDNSTSCFLVRGRKLHYLSYLSPRKH---- 896
Query: 121 KGTNIMRNHSTILPSKRYYISFENLDDRVYRFVTAWAIAKPRWIEIYRFEDHD-VAKNYH 177
GTNI + + SK YYI+FENLD R +R + AW A+ RWI + HD V YH
Sbjct: 897 -GTNITTH---TVSSKSYYITFENLDYREFRNLRAWVKAQRRWIR-FDVGSHDFVVNKYH 956
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LGC6 | 4.3e-82 | 76.68 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G022770 PE=4 SV=1 | [more] |
| E5GB33 | 2.8e-49 | 61.24 | TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=... | [more] |
| A0A1S3BZ02 | 1.9e-42 | 51.31 | LOW QUALITY PROTEIN: disease resistance protein RPP4-like OS=Cucumis melo OX=365... | [more] |
| A0A1S3BZ32 | 1.6e-33 | 47.18 | TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494963... | [more] |
| A0A1S3BZQ4 | 1.6e-33 | 47.18 | TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494963... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_011650108.2 | 1.3e-80 | 75.65 | TMV resistance protein N [Cucumis sativus] | [more] |
| KAE8651600.1 | 2.8e-75 | 76.09 | hypothetical protein Csa_023480 [Cucumis sativus] | [more] |
| ADN33675.1 | 5.8e-49 | 61.24 | TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo] | [more] |
| XP_038877835.1 | 8.1e-43 | 52.88 | LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida] | [more] |
| XP_008454602.1 | 4.0e-42 | 51.31 | PREDICTED: LOW QUALITY PROTEIN: disease resistance protein RPP4-like [Cucumis me... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
