PI0024368 (gene) Melon (PI 482460) v1

Overview
NamePI0024368
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr02: 13076797 .. 13077292 (-)
RNA-Seq ExpressionPI0024368
SyntenyPI0024368
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGAAATTGCCCGGCACTAACATCCAAGGACCATCGACTATTGATTGTCGTGTGAAATCCCTTAAGAAAACTTATCAGGCAATTGCAGAAATGAGGGGGCCATCCTGTAGTGGGTTCGGGTGGAATGAAGAATATCAGTGCATCATCGCGAAACACGACTTGTTTGATAATTGGGTCAAGGTTCAGTTTATTTAACGCGAATTTTACATAATTTTGAAATCACAACCATCTACTAATTGTTTGTTTCATGTCTGTACAGAGTCATCCTGGGGTGAAAGGGCTGTTACACAAATCATTTCCATATTATGACGATTTGTCGTACGTGTTCGGCAGAGATCAGGCAATAGAAGCACGTGCGGAGACGTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTCAATGACAGTGTTCCACTTGATGATCTACATGACAAAGACATCTCGACGATGTATAGCCAAGGGTGGATATGTCCCCAAATAACATGGTAG

mRNA sequence

ATGGCGGAGAAATTGCCCGGCACTAACATCCAAGGACCATCGACTATTGATTGTCGTGTGAAATCCCTTAAGAAAACTTATCAGGCAATTGCAGAAATGAGGGGGCCATCCTGTAGTGGGTTCGGGTGGAATGAAGAATATCAGTGCATCATCGCGAAACACGACTTGTTTGATAATTGGGTCAAGAGTCATCCTGGGGTGAAAGGGCTGTTACACAAATCATTTCCATATTATGACGATTTGTCGTACGTGTTCGGCAGAGATCAGGCAATAGAAGCACGTGCGGAGACGTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTCAATGACAGTGTTCCACTTGATGATCTACATGACAAAGACATCTCGACGATGTATAGCCAAGGGTGGATATGTCCCCAAATAACATGGTAG

Coding sequence (CDS)

ATGGCGGAGAAATTGCCCGGCACTAACATCCAAGGACCATCGACTATTGATTGTCGTGTGAAATCCCTTAAGAAAACTTATCAGGCAATTGCAGAAATGAGGGGGCCATCCTGTAGTGGGTTCGGGTGGAATGAAGAATATCAGTGCATCATCGCGAAACACGACTTGTTTGATAATTGGGTCAAGAGTCATCCTGGGGTGAAAGGGCTGTTACACAAATCATTTCCATATTATGACGATTTGTCGTACGTGTTCGGCAGAGATCAGGCAATAGAAGCACGTGCGGAGACGTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTCAATGACAGTGTTCCACTTGATGATCTACATGACAAAGACATCTCGACGATGTATAGCCAAGGGTGGATATGTCCCCAAATAACATGGTAG

Protein sequence

MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSNVPNSFNDSVPLDDLHDKDISTMYSQGWICPQITW
Homology
BLAST of PI0024368 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.8e-57
Identity = 104/130 (80.00%), Postives = 115/130 (88.46%), Query Frame = 0

Query: 1   MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNW 60
           MAEKLPGTNIQ  STIDC VKSLKKTY AIAEMRGPSCSGFGWNEE+QCIIA+ DLFD+W
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSW 111

Query: 61  VKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSNVPNSFNDSVPLDDLHD 120
           +KSHP  KGLLHKSFPYYDDLSYVFG+D+A  AR+ETF +VGSNV N FND++PL D HD
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 121 KDISTMYSQG 131
           +DI TMYSQG
Sbjct: 172 EDIPTMYSQG 181

BLAST of PI0024368 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.8e-57
Identity = 104/130 (80.00%), Postives = 115/130 (88.46%), Query Frame = 0

Query: 1   MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNW 60
           MAEKLPGTNIQ  STIDC VKSLKKTY AIAEMRGPSCSGFGWNEE+QCIIA+ DLFD+W
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSW 111

Query: 61  VKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSNVPNSFNDSVPLDDLHD 120
           +KSHP  KGLLHKSFPYYDDLSYVFG+D+A  AR+ETF +VGSNV N FND++PL D HD
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 121 KDISTMYSQG 131
           +DI TMYSQG
Sbjct: 172 EDIPTMYSQG 181

BLAST of PI0024368 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.8e-49
Identity = 94/130 (72.31%), Postives = 105/130 (80.77%), Query Frame = 0

Query: 1   MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNW 60
           M +KL  TNIQG   +DCRVKSLKK   +   MRGPSCSGFGWNE++QCIIA+ DLFDNW
Sbjct: 223 MVKKLSDTNIQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNW 282

Query: 61  VKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSNVPNSFNDSVPLDDLHD 120
           VKSHP  +GLLHKSFPYYDDLSYVF +D+A EAR ETFADVGSNV N FND VPL D +D
Sbjct: 283 VKSHPTAEGLLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYD 342

Query: 121 KDISTMYSQG 131
           +DI  MYSQG
Sbjct: 343 QDIPAMYSQG 352

BLAST of PI0024368 vs. ExPASy TrEMBL
Match: A0A5D3D8J6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00030 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.1e-48
Identity = 94/132 (71.21%), Postives = 106/132 (80.30%), Query Frame = 0

Query: 1   MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNW 60
           M +KL  TNIQG   +DCRVKSLKK   +   +RGPSCSGFGWNE++QCIIA+ DLFDNW
Sbjct: 223 MVKKLSDTNIQGSLPMDCRVKSLKKHLPSNFRIRGPSCSGFGWNEKFQCIIAERDLFDNW 282

Query: 61  VKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSNVPNSFNDSVPLDDLHD 120
           VKSHP  +GLLHKSFPYYDDLSYVF +D+A EAR ETFADVGSNV N FND VPL D +D
Sbjct: 283 VKSHPTAEGLLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYD 342

Query: 121 KDISTMYSQGWI 133
           +DI  MYSQG I
Sbjct: 343 QDIPAMYSQGAI 354

BLAST of PI0024368 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.0e-43
Identity = 80/99 (80.81%), Postives = 89/99 (89.90%), Query Frame = 0

Query: 32  EMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAI 91
           EMRGPSCSGFGWNEE+QCIIA+ DLFD+WVKSHP  KGLLHKSFPYYDDLSYVFG+D+A 
Sbjct: 365 EMRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRAT 424

Query: 92  EARAETFADVGSNVPNSFNDSVPLDDLHDKDISTMYSQG 131
            AR+ETF DVGSNVPN FND++PL D HD+DI TMYSQG
Sbjct: 425 GARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQG 463

BLAST of PI0024368 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 231.1 bits (588), Expect = 5.8e-57
Identity = 104/130 (80.00%), Postives = 115/130 (88.46%), Query Frame = 0

Query: 1   MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNW 60
           MAEKLPGTNIQ  STIDC VKSLKKTY AIAEMRGPSCSGFGWNEE+QCIIA+ DLFD+W
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSW 111

Query: 61  VKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSNVPNSFNDSVPLDDLHD 120
           +KSHP  KGLLHKSFPYYDDLSYVFG+D+A  AR+ETF +VGSNV N FND++PL D HD
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 121 KDISTMYSQG 131
           +DI TMYSQG
Sbjct: 172 EDIPTMYSQG 181

BLAST of PI0024368 vs. NCBI nr
Match: KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 9.9e-49
Identity = 94/130 (72.31%), Postives = 105/130 (80.77%), Query Frame = 0

Query: 1   MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNW 60
           M +KL  TNIQG   +DCRVKSLKK   +   MRGPSCSGFGWNE++QCIIA+ DLFDNW
Sbjct: 223 MVKKLSDTNIQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNW 282

Query: 61  VKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSNVPNSFNDSVPLDDLHD 120
           VKSHP  +GLLHKSFPYYDDLSYVF +D+A EAR ETFADVGSNV N FND VPL D +D
Sbjct: 283 VKSHPTAEGLLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYD 342

Query: 121 KDISTMYSQG 131
           +DI  MYSQG
Sbjct: 343 QDIPAMYSQG 352

BLAST of PI0024368 vs. NCBI nr
Match: TYK19779.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 2.2e-48
Identity = 94/132 (71.21%), Postives = 106/132 (80.30%), Query Frame = 0

Query: 1   MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNW 60
           M +KL  TNIQG   +DCRVKSLKK   +   +RGPSCSGFGWNE++QCIIA+ DLFDNW
Sbjct: 223 MVKKLSDTNIQGSLPMDCRVKSLKKHLPSNFRIRGPSCSGFGWNEKFQCIIAERDLFDNW 282

Query: 61  VKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSNVPNSFNDSVPLDDLHD 120
           VKSHP  +GLLHKSFPYYDDLSYVF +D+A EAR ETFADVGSNV N FND VPL D +D
Sbjct: 283 VKSHPTAEGLLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYD 342

Query: 121 KDISTMYSQGWI 133
           +DI  MYSQG I
Sbjct: 343 QDIPAMYSQGAI 354

BLAST of PI0024368 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 6.2e-43
Identity = 80/99 (80.81%), Postives = 89/99 (89.90%), Query Frame = 0

Query: 32  EMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAI 91
           EMRGPSCSGFGWNEE+QCIIA+ DLFD+WVKSHP  KGLLHKSFPYYDDLSYVFG+D+A 
Sbjct: 365 EMRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRAT 424

Query: 92  EARAETFADVGSNVPNSFNDSVPLDDLHDKDISTMYSQG 131
            AR+ETF DVGSNVPN FND++PL D HD+DI TMYSQG
Sbjct: 425 GARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQG 463

BLAST of PI0024368 vs. NCBI nr
Match: KAA0062588.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.8 bits (460), Expect = 4.0e-42
Identity = 81/130 (62.31%), Postives = 104/130 (80.00%), Query Frame = 0

Query: 1   MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNW 60
           MAEKLPG  ++  + IDCR+K+LK+T+QAIAEMRGP+CSGFGWN+E +CI+A+ +LFDNW
Sbjct: 28  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW 87

Query: 61  VKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSNVPNSFNDSVPLDDLHD 120
           V+SHP VKGLL+K FPYYD+L+YVFGRD+A    AETFADVGSN P    D   + D  +
Sbjct: 88  VRSHPAVKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGD-GN 147

Query: 121 KDISTMYSQG 131
           +D  ++YSQG
Sbjct: 148 EDFPSVYSQG 156

BLAST of PI0024368 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05
Identity = 25/95 (26.32%), Postives = 47/95 (49.47%), Query Frame = 0

Query: 10  IQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKG 69
           + G   +  R K+L+  ++++  +      GF W++  Q ++A + ++D ++K HP  + 
Sbjct: 60  LYGKDVLKNRHKTLRNLFKSVNNLLIE--DGFSWDDTRQMVVADNCVWDEYLKIHPDSRS 119

Query: 70  LLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSN 105
              KS P Y DL  V+  D   E +AE     G +
Sbjct: 120 FRIKSIPCYKDLCLVYS-DGMSEHKAEESISEGES 151

BLAST of PI0024368 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05
Identity = 25/95 (26.32%), Postives = 47/95 (49.47%), Query Frame = 0

Query: 10  IQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKG 69
           + G   +  R K+L+  ++++  +      GF W++  Q ++A + ++D ++K HP  + 
Sbjct: 60  LYGKDVLKNRHKTLRNLFKSVNNLLIE--DGFSWDDTRQMVVADNCVWDEYLKIHPDSRS 119

Query: 70  LLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSN 105
              KS P Y DL  V+  D   E +AE     G +
Sbjct: 120 FRIKSIPCYKDLCLVYS-DGMSEHKAEESISEGES 151

BLAST of PI0024368 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05
Identity = 19/70 (27.14%), Postives = 39/70 (55.71%), Query Frame = 0

Query: 19  RVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYY 78
           R K L++ Y  I  +     +GF W+     +IA  D+++ ++++HP  +    K+ P Y
Sbjct: 381 RYKHLRRLYNDIKFLL--EQNGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSY 440

Query: 79  DDLSYVFGRD 89
            +L ++FG++
Sbjct: 441 PNLCFIFGKE 448

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U0H72.8e-5780.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L32.8e-5780.00uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A5A7TJS24.8e-4972.31Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D8J61.1e-4871.21Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DG223.0e-4380.81Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
XP_008441954.15.8e-5780.00PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
KAA0043564.19.9e-4972.31retrotransposon protein [Cucumis melo var. makuwa][more]
TYK19779.12.2e-4871.21retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0062747.16.2e-4380.81retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p... [more]
KAA0062588.14.0e-4262.31retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT4G02210.11.1e-0526.32unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.21.1e-0526.32unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G24960.21.4e-0527.14unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..109
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0024368.1PI0024368.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0046872 metal ion binding