PI0024368 (gene) Melon (PI 482460) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGAGAAATTGCCCGGCACTAACATCCAAGGACCATCGACTATTGATTGTCGTGTGAAATCCCTTAAGAAAACTTATCAGGCAATTGCAGAAATGAGGGGGCCATCCTGTAGTGGGTTCGGGTGGAATGAAGAATATCAGTGCATCATCGCGAAACACGACTTGTTTGATAATTGGGTCAAGGTTCAGTTTATTTAACGCGAATTTTACATAATTTTGAAATCACAACCATCTACTAATTGTTTGTTTCATGTCTGTACAGAGTCATCCTGGGGTGAAAGGGCTGTTACACAAATCATTTCCATATTATGACGATTTGTCGTACGTGTTCGGCAGAGATCAGGCAATAGAAGCACGTGCGGAGACGTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTCAATGACAGTGTTCCACTTGATGATCTACATGACAAAGACATCTCGACGATGTATAGCCAAGGGTGGATATGTCCCCAAATAACATGGTAG ATGGCGGAGAAATTGCCCGGCACTAACATCCAAGGACCATCGACTATTGATTGTCGTGTGAAATCCCTTAAGAAAACTTATCAGGCAATTGCAGAAATGAGGGGGCCATCCTGTAGTGGGTTCGGGTGGAATGAAGAATATCAGTGCATCATCGCGAAACACGACTTGTTTGATAATTGGGTCAAGAGTCATCCTGGGGTGAAAGGGCTGTTACACAAATCATTTCCATATTATGACGATTTGTCGTACGTGTTCGGCAGAGATCAGGCAATAGAAGCACGTGCGGAGACGTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTCAATGACAGTGTTCCACTTGATGATCTACATGACAAAGACATCTCGACGATGTATAGCCAAGGGTGGATATGTCCCCAAATAACATGGTAG ATGGCGGAGAAATTGCCCGGCACTAACATCCAAGGACCATCGACTATTGATTGTCGTGTGAAATCCCTTAAGAAAACTTATCAGGCAATTGCAGAAATGAGGGGGCCATCCTGTAGTGGGTTCGGGTGGAATGAAGAATATCAGTGCATCATCGCGAAACACGACTTGTTTGATAATTGGGTCAAGAGTCATCCTGGGGTGAAAGGGCTGTTACACAAATCATTTCCATATTATGACGATTTGTCGTACGTGTTCGGCAGAGATCAGGCAATAGAAGCACGTGCGGAGACGTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTCAATGACAGTGTTCCACTTGATGATCTACATGACAAAGACATCTCGACGATGTATAGCCAAGGGTGGATATGTCCCCAAATAACATGGTAG MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSNVPNSFNDSVPLDDLHDKDISTMYSQGWICPQITW Homology
BLAST of PI0024368 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1) HSP 1 Score: 231.1 bits (588), Expect = 2.8e-57 Identity = 104/130 (80.00%), Postives = 115/130 (88.46%), Query Frame = 0
BLAST of PI0024368 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1) HSP 1 Score: 231.1 bits (588), Expect = 2.8e-57 Identity = 104/130 (80.00%), Postives = 115/130 (88.46%), Query Frame = 0
BLAST of PI0024368 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 4.8e-49 Identity = 94/130 (72.31%), Postives = 105/130 (80.77%), Query Frame = 0
BLAST of PI0024368 vs. ExPASy TrEMBL
Match: A0A5D3D8J6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00030 PE=4 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 1.1e-48 Identity = 94/132 (71.21%), Postives = 106/132 (80.30%), Query Frame = 0
BLAST of PI0024368 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 3.0e-43 Identity = 80/99 (80.81%), Postives = 89/99 (89.90%), Query Frame = 0
BLAST of PI0024368 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 231.1 bits (588), Expect = 5.8e-57 Identity = 104/130 (80.00%), Postives = 115/130 (88.46%), Query Frame = 0
BLAST of PI0024368 vs. NCBI nr
Match: KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 203.8 bits (517), Expect = 9.9e-49 Identity = 94/130 (72.31%), Postives = 105/130 (80.77%), Query Frame = 0
BLAST of PI0024368 vs. NCBI nr
Match: TYK19779.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 202.6 bits (514), Expect = 2.2e-48 Identity = 94/132 (71.21%), Postives = 106/132 (80.30%), Query Frame = 0
BLAST of PI0024368 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 184.5 bits (467), Expect = 6.2e-43 Identity = 80/99 (80.81%), Postives = 89/99 (89.90%), Query Frame = 0
BLAST of PI0024368 vs. NCBI nr
Match: KAA0062588.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 181.8 bits (460), Expect = 4.0e-42 Identity = 81/130 (62.31%), Postives = 104/130 (80.00%), Query Frame = 0
BLAST of PI0024368 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). ) HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05 Identity = 25/95 (26.32%), Postives = 47/95 (49.47%), Query Frame = 0
BLAST of PI0024368 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). ) HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05 Identity = 25/95 (26.32%), Postives = 47/95 (49.47%), Query Frame = 0
BLAST of PI0024368 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05 Identity = 19/70 (27.14%), Postives = 39/70 (55.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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