PI0024346 (gene) Melon (PI 482460) v1

Overview


Name	PI0024346
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 2-like
Location	chr01: 11594419 .. 11594586 (-)
RNA-Seq Expression	PI0024346
Synteny	PI0024346

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGTAGTAGTGGACAACACAGTGAAACTAGTCCTAGCACTAATCTTAGTCCTAGTCCTGCTCCTTCCACTAATAAGACAACAGAAATTGTGAGTTCAAGTAAACCACCACTACCCAATAAGAAGAGAGCTAGAGCAACTAAGAAGACAACTTTCACTATATGA

mRNA sequence

ATGGAAAGTAGTAGTGGACAACACAGTGAAACTAGTCCTAGCACTAATCTTAGTCCTAGTCCTGCTCCTTCCACTAATAAGACAACAGAAATTGTGAGTTCAAGTAAACCACCACTACCCAATAAGAAGAGAGCTAGAGCAACTAAGAAGACAACTTTCACTATATGA

Coding sequence (CDS)

ATGGAAAGTAGTAGTGGACAACACAGTGAAACTAGTCCTAGCACTAATCTTAGTCCTAGTCCTGCTCCTTCCACTAATAAGACAACAGAAATTGTGAGTTCAAGTAAACCACCACTACCCAATAAGAAGAGAGCTAGAGCAACTAAGAAGACAACTTTCACTATATGA

Protein sequence

MESSSGQHSETSPSTNLSPSPAPSTNKTTEIVSSSKPPLPNKKRARATKKTTFTI

Homology

[Close]

BLAST of PI0024346 vs. ExPASy TrEMBL
Match: A0A5D3C4Z8 (Zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001630 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  MESSSGQHSETSPSTNLSPSPAPSTNKTTEIVSSSKPPLPNKKRARATKKTTFTI 56
          ME+SSGQHSETSP  NLSPSPAPSTN  TE VSSSKPPLP+KK+A+ATKK T T+
Sbjct: 1  METSSGQHSETSP--NLSPSPAPSTNNATETVSSSKPPLPDKKKAKATKKITSTV 53

[Close]

BLAST of PI0024346 vs. ExPASy TrEMBL
Match: A0A5D3D2K8 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00240 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  MESSSGQHSETSPSTNLSPSPAPSTNKTTEIVSSSKPPLPNKKRARATKKTTFTI 56
          ME+SSGQHSETSPS  LSPSPAPSTN TT  VSSSKPPLP+KK+ RATKKTT T+
Sbjct: 1  METSSGQHSETSPS--LSPSPAPSTNNTTGTVSSSKPPLPDKKKVRATKKTTSTV 53

[Close]

BLAST of PI0024346 vs. ExPASy TrEMBL
Match: A0A5A7SRD2 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00270 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  MESSSGQHSETSPSTNLSPSPAPSTNKTTEIVSSSKPPLPNKKRARATKKTTFTI 56
          ME+SSGQHSETSPS  LSPSPAPSTN TT  VSSSKPPLP+KK+ RATKKTT T+
Sbjct: 1  METSSGQHSETSPS--LSPSPAPSTNNTTGTVSSSKPPLPDKKKVRATKKTTSTV 53

[Close]

BLAST of PI0024346 vs. ExPASy TrEMBL
Match: A0A5D3C9B8 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001200 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.6e-10
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  MESSSGQHSETSPSTNLSPSPAPSTNKTTEIVSSSKPPLPNKKRARATKKTTFTI 56
          ME+SSGQHSETSPS  LSPSPAPSTN  T  VSSSKPPLP+KK+ RATKKTT T+
Sbjct: 1  METSSGQHSETSPS--LSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTV 53

[Close]

BLAST of PI0024346 vs. ExPASy TrEMBL
Match: A0A5A7VIJ7 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00070 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.6e-10
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  MESSSGQHSETSPSTNLSPSPAPSTNKTTEIVSSSKPPLPNKKRARATKKTTFTI 56
          ME+SSGQHSETSPS  LSPSPAPSTN  T  VSSSKPPLP+KK+ RATKKTT T+
Sbjct: 1  METSSGQHSETSPS--LSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTV 53

[Close]

BLAST of PI0024346 vs. NCBI nr
Match: TYK16769.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 3.6e-10
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  MESSSGQHSETSPSTNLSPSPAPSTNKTTEIVSSSKPPLPNKKRARATKKTTFTI 56
          ME+SSGQHSETSPS  LSPSPAPSTN TT  VSSSKPPLP+KK+ RATKKTT T+
Sbjct: 1  METSSGQHSETSPS--LSPSPAPSTNNTTGTVSSSKPPLPDKKKVRATKKTTSTV 53

[Close]

BLAST of PI0024346 vs. NCBI nr
Match: TYK05459.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 3.6e-10
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  MESSSGQHSETSPSTNLSPSPAPSTNKTTEIVSSSKPPLPNKKRARATKKTTFTI 56
          ME+SSGQHSETSP  NLSPSPAPSTN  TE VSSSKPPLP+KK+A+ATKK T T+
Sbjct: 1  METSSGQHSETSP--NLSPSPAPSTNNATETVSSSKPPLPDKKKAKATKKITSTV 53

[Close]

BLAST of PI0024346 vs. NCBI nr
Match: KAA0031947.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 3.6e-10
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  MESSSGQHSETSPSTNLSPSPAPSTNKTTEIVSSSKPPLPNKKRARATKKTTFTI 56
          ME+SSGQHSETSPS  LSPSPAPSTN TT  VSSSKPPLP+KK+ RATKKTT T+
Sbjct: 1  METSSGQHSETSPS--LSPSPAPSTNNTTGTVSSSKPPLPDKKKVRATKKTTSTV 53

[Close]

BLAST of PI0024346 vs. NCBI nr
Match: KAA0067548.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  MESSSGQHSETSPSTNLSPSPAPSTNKTTEIVSSSKPPLPNKKRARATKKTTFTI 56
          ME+SSGQHSETSPS  LSPSPAPSTN  T  VSSSKPPLP+KK+ RATKKTT T+
Sbjct: 1  METSSGQHSETSPS--LSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTV 53

[Close]

BLAST of PI0024346 vs. NCBI nr
Match: KAA0051113.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   MESSSGQHSETSPSTNLSPSPAPSTNKTTEIVSSSKPPLPNKKRARATKKTTFTI 56
           ME+SSGQHSETSPS  LSPSPAPSTN  T  VSSSKPPLP+KK+ RATKKTT T+
Sbjct: 159 METSSGQHSETSPS--LSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTV 211

The following BLAST results are available for this feature:

BLAST of PI0024346 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024346 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C4Z8	1.7e-10	78.18	Zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo var...	[more]
A0A5D3D2K8	1.7e-10	80.00	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7SRD2	1.7e-10	80.00	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5D3C9B8	6.6e-10	78.18	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7VIJ7	6.6e-10	78.18	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]

BLAST of PI0024346 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16769.1	3.6e-10	80.00	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
TYK05459.1	3.6e-10	78.18	zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis melo var. ...	[more]
KAA0031947.1	3.6e-10	80.00	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0067548.1	1.4e-09	78.18	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0051113.1	1.4e-09	78.18	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of PI0024346 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 55..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024346.1	PI0024346.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009791	post-embryonic development
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046983	protein dimerization activity