PI0024298 (gene) Melon (PI 482460) v1

Overview


Name	PI0024298
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Phloem filament protein
Location	chr01: 1432712 .. 1433296 (-)
RNA-Seq Expression	PI0024298
Synteny	PI0024298

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCACAAAATTTTCAATACTATTAAATATCAACTAAAGATCACAAAAAATGACAATTGGTGGAAGAATTGGTATTGGCATTGGCCTTGGTCTTGGTAGTGCTCCCGGTTTCAATTTATCGCTCGGCGGAGGCATCGGTATCGGGGGTAGAAGGGGGTGCAGGAGTCATGATCCTTCAAAAAAATGGAGTCAAGTTCCCAATGTGCACGATCAGGTTACTATAGAAATTGCTAAGTTTGCAGTGGATGCGTTCAACCAAAAACATGGAAATAATCTTGTGTTTCAAGCCGTTTTGGAAGCTTGGGTTGTTATAGTTGATCCTTTCAAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGCAACGTCCCCTCAAGTTTCATGCTGTCGTGGTTGAAACAACTGGCATTCACAAGACTAGGAATCTTGTGTCTTTCGACCAAATCGTCTAAAACAAAGTTATATATATGTATAATCAAAGTTTATACTTATGTGTGTGATCTACACAATTAATAAATCTTCTATGATCATGTACTGCTCTACTTTCTTTCACTATCTATTATAAAATAATCGTCGCCAAA

mRNA sequence

ACCACAAAATTTTCAATACTATTAAATATCAACTAAAGATCACAAAAAATGACAATTGGTGGAAGAATTGGTATTGGCATTGGCCTTGGTCTTGGTAGTGCTCCCGGTTTCAATTTATCGCTCGGCGGAGGCATCGGTATCGGGGGTAGAAGGGGGTGCAGGAGTCATGATCCTTCAAAAAAATGGAGTCAAGTTCCCAATGTGCACGATCAGGTTACTATAGAAATTGCTAAGTTTGCAGTGGATGCGTTCAACCAAAAACATGGAAATAATCTTGTGTTTCAAGCCGTTTTGGAAGCTTGGGTTGTTATAGTTGATCCTTTCAAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGCAACGTCCCCTCAAGTTTCATGCTGTCGTGGTTGAAACAACTGGCATTCACAAGACTAGGAATCTTGTGTCTTTCGACCAAATCGTCTAAAACAAAGTTATATATATGTATAATCAAAGTTTATACTTATGTGTGTGATCTACACAATTAATAAATCTTCTATGATCATGTACTGCTCTACTTTCTTTCACTATCTATTATAAAATAATCGTCGCCAAA

Coding sequence (CDS)

ATGACAATTGGTGGAAGAATTGGTATTGGCATTGGCCTTGGTCTTGGTAGTGCTCCCGGTTTCAATTTATCGCTCGGCGGAGGCATCGGTATCGGGGGTAGAAGGGGGTGCAGGAGTCATGATCCTTCAAAAAAATGGAGTCAAGTTCCCAATGTGCACGATCAGGTTACTATAGAAATTGCTAAGTTTGCAGTGGATGCGTTCAACCAAAAACATGGAAATAATCTTGTGTTTCAAGCCGTTTTGGAAGCTTGGGTTGTTATAGTTGATCCTTTCAAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGCAACGTCCCCTCAAGTTTCATGCTGTCGTGGTTGAAACAACTGGCATTCACAAGACTAGGAATCTTGTGTCTTTCGACCAAATCGTCTAA

Protein sequence

MTIGGRIGIGIGLGLGSAPGFNLSLGGGIGIGGRRGCRSHDPSKKWSQVPNVHDQVTIEIAKFAVDAFNQKHGNNLVFQAVLEAWVVIVDPFKKEYSIELVAKDCLQRPLKFHAVVVETTGIHKTRNLVSFDQIV

Homology

[Close]

BLAST of PI0024298 vs. ExPASy TrEMBL
Match: A0A5D3C621 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001790 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.4e-39
Identity = 92/136 (67.65%), Postives = 108/136 (79.41%), Query Frame = 0


Query: 1   MTIGGRIGIGIGLGLGSAPGFNLSLGGGIGIGGRR-GCRSHDPSKKWSQVPNVHDQVTIE 60
           MT+G  IG GIG+GLG  PG N+S+GGGIGI GR+ GC+SHDPSKKW+++ +V+D   IE
Sbjct: 1   MTLG--IGGGIGIGLG-IPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIE 60

Query: 61  IAKFAVDAFNQKHGNNLVFQAVLEAWVVIVDPFKKEYSIELVAKDCLQRPLKFHAVVVET 120
           IAKFAV  FNQKHGNNL FQAVLEAWVV+    KKEYSIELVAKDCL R L++HAVV+E 
Sbjct: 61  IAKFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEI 120

Query: 121 TGIHKTRNLVSFDQIV 136
            G     NLVSF+QIV
Sbjct: 121 CGTPPGWNLVSFNQIV 133

[Close]

BLAST of PI0024298 vs. ExPASy TrEMBL
Match: A0A5A7SJV3 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001800 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.2e-38
Identity = 91/136 (66.91%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 1   MTIGGRIGIGIGLGLGSAPGFNLSLGGGIGIGGRR-GCRSHDPSKKWSQVPNVHDQVTIE 60
           MT+G  IG GI +GLG  PG N+S+GGGIGI GR+ GC+SHDPSKKW+++ +V+D   IE
Sbjct: 1   MTLG--IGGGISIGLG-IPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIE 60

Query: 61  IAKFAVDAFNQKHGNNLVFQAVLEAWVVIVDPFKKEYSIELVAKDCLQRPLKFHAVVVET 120
           IAKFAV  FNQKHGNNL FQAVLEAWVV+    KKEYSIELVAKDCL R L++HAVV+E 
Sbjct: 61  IAKFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEI 120

Query: 121 TGIHKTRNLVSFDQIV 136
            G     NLVSF+QIV
Sbjct: 121 CGTPPGWNLVSFNQIV 133

[Close]

BLAST of PI0024298 vs. ExPASy TrEMBL
Match: E5GCR5 (Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.2e-38
Identity = 91/136 (66.91%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 1   MTIGGRIGIGIGLGLGSAPGFNLSLGGGIGIGGRR-GCRSHDPSKKWSQVPNVHDQVTIE 60
           MT+G  IG GI +GLG  PG N+S+GGGIGI GR+ GC+SHDPSKKW+++ +V+D   IE
Sbjct: 1   MTLG--IGGGISIGLG-IPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIE 60

Query: 61  IAKFAVDAFNQKHGNNLVFQAVLEAWVVIVDPFKKEYSIELVAKDCLQRPLKFHAVVVET 120
           IAKFAV  FNQKHGNNL FQAVLEAWVV+    KKEYSIELVAKDCL R L++HAVV+E 
Sbjct: 61  IAKFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEI 120

Query: 121 TGIHKTRNLVSFDQIV 136
            G     NLVSF+QIV
Sbjct: 121 CGTPPGWNLVSFNQIV 133

[Close]

BLAST of PI0024298 vs. ExPASy TrEMBL
Match: A0A0A0K477 (PP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067390 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 6.3e-38
Identity = 91/136 (66.91%), Postives = 104/136 (76.47%), Query Frame = 0


Query: 1   MTIGGRIGIGIGLGLGSAPGFNLSLGGGIGIGGRR-GCRSHDPSKKWSQVPNVH-DQVTI 60
           MTIG  IG GIG+G+G  PG  +S+GGGIGIG R+ GC+SHDPSKKWSQVPN   DQV I
Sbjct: 24  MTIG--IGGGIGIGIG-VPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVII 83

Query: 61  EIAKFAVDAFNQKHGNNLVFQAVLEAWVVIVDPFKKEYSIELVAKDCLQRPLKFHAVVVE 120
            +A FAV AFNQK+GN LVF AVLEAWVV++   KKEYSIELVAKDCL R L FHA+V+E
Sbjct: 84  NVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIE 143

Query: 121 TTGIHKTRNLVSFDQI 135
             G+    NL SF QI
Sbjct: 144 IVGVPPGWNLFSFTQI 156

[Close]

BLAST of PI0024298 vs. ExPASy TrEMBL
Match: A0A5A7SQL4 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001810 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.7e-33
Identity = 86/134 (64.18%), Postives = 101/134 (75.37%), Query Frame = 0


Query: 3   IGGRIGIGIGLGLGSAPGFNLSLGGGIGIGGRR-GCRSHDPSKKWSQVPNVHDQVTIEIA 62
           IGGRIGIG GL     PGFN+S+GGGIGIGGR+ GC+SH+PSKKW Q+ NV     +E A
Sbjct: 5   IGGRIGIGFGL-----PGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAA 64

Query: 63  KFAVDAFNQKHGNNLVFQAVLEAWVVIVDPFKKEYSIELVAKDCLQRPLKFHAVVVETTG 122
           KFAVDAFN+K+ NNL FQ V EAWV  V+  +KEYSIELVAKDC  R L+FHAVV+E T 
Sbjct: 65  KFAVDAFNKKYENNLEFQYVTEAWVHEVNN-EKEYSIELVAKDCFHRLLEFHAVVIEKTV 124

Query: 123 IH-KTRNLVSFDQI 135
            H K   LVSF++I
Sbjct: 125 DHKKIWILVSFERI 132

[Close]

BLAST of PI0024298 vs. NCBI nr
Match: TYK06875.1 (phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 170.6 bits (431), Expect = 9.1e-39
Identity = 92/136 (67.65%), Postives = 108/136 (79.41%), Query Frame = 0


Query: 1   MTIGGRIGIGIGLGLGSAPGFNLSLGGGIGIGGRR-GCRSHDPSKKWSQVPNVHDQVTIE 60
           MT+G  IG GIG+GLG  PG N+S+GGGIGI GR+ GC+SHDPSKKW+++ +V+D   IE
Sbjct: 1   MTLG--IGGGIGIGLG-IPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIE 60

Query: 61  IAKFAVDAFNQKHGNNLVFQAVLEAWVVIVDPFKKEYSIELVAKDCLQRPLKFHAVVVET 120
           IAKFAV  FNQKHGNNL FQAVLEAWVV+    KKEYSIELVAKDCL R L++HAVV+E 
Sbjct: 61  IAKFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEI 120

Query: 121 TGIHKTRNLVSFDQIV 136
            G     NLVSF+QIV
Sbjct: 121 CGTPPGWNLVSFNQIV 133

[Close]

BLAST of PI0024298 vs. NCBI nr
Match: ADN34263.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031424.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 4.5e-38
Identity = 91/136 (66.91%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 1   MTIGGRIGIGIGLGLGSAPGFNLSLGGGIGIGGRR-GCRSHDPSKKWSQVPNVHDQVTIE 60
           MT+G  IG GI +GLG  PG N+S+GGGIGI GR+ GC+SHDPSKKW+++ +V+D   IE
Sbjct: 1   MTLG--IGGGISIGLG-IPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIE 60

Query: 61  IAKFAVDAFNQKHGNNLVFQAVLEAWVVIVDPFKKEYSIELVAKDCLQRPLKFHAVVVET 120
           IAKFAV  FNQKHGNNL FQAVLEAWVV+    KKEYSIELVAKDCL R L++HAVV+E 
Sbjct: 61  IAKFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEI 120

Query: 121 TGIHKTRNLVSFDQIV 136
            G     NLVSF+QIV
Sbjct: 121 CGTPPGWNLVSFNQIV 133

[Close]

BLAST of PI0024298 vs. NCBI nr
Match: XP_011658840.2 (uncharacterized protein LOC105436098 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-37
Identity = 91/136 (66.91%), Postives = 104/136 (76.47%), Query Frame = 0


Query: 1   MTIGGRIGIGIGLGLGSAPGFNLSLGGGIGIGGRR-GCRSHDPSKKWSQVPNVH-DQVTI 60
           MTIG  IG GIG+G+G  PG  +S+GGGIGIG R+ GC+SHDPSKKWSQVPN   DQV I
Sbjct: 1   MTIG--IGGGIGIGIG-VPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVII 60

Query: 61  EIAKFAVDAFNQKHGNNLVFQAVLEAWVVIVDPFKKEYSIELVAKDCLQRPLKFHAVVVE 120
            +A FAV AFNQK+GN LVF AVLEAWVV++   KKEYSIELVAKDCL R L FHA+V+E
Sbjct: 61  NVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIE 120

Query: 121 TTGIHKTRNLVSFDQI 135
             G+    NL SF QI
Sbjct: 121 IVGVPPGWNLFSFTQI 133

[Close]

BLAST of PI0024298 vs. NCBI nr
Match: KAE8645826.1 (hypothetical protein Csa_017081 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-37
Identity = 91/136 (66.91%), Postives = 104/136 (76.47%), Query Frame = 0


Query: 1   MTIGGRIGIGIGLGLGSAPGFNLSLGGGIGIGGRR-GCRSHDPSKKWSQVPNVH-DQVTI 60
           MTIG  IG GIG+G+G  PG  +S+GGGIGIG R+ GC+SHDPSKKWSQVPN   DQV I
Sbjct: 9   MTIG--IGGGIGIGIG-VPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVII 68

Query: 61  EIAKFAVDAFNQKHGNNLVFQAVLEAWVVIVDPFKKEYSIELVAKDCLQRPLKFHAVVVE 120
            +A FAV AFNQK+GN LVF AVLEAWVV++   KKEYSIELVAKDCL R L FHA+V+E
Sbjct: 69  NVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIE 128

Query: 121 TTGIHKTRNLVSFDQI 135
             G+    NL SF QI
Sbjct: 129 IVGVPPGWNLFSFTQI 141

[Close]

BLAST of PI0024298 vs. NCBI nr
Match: ADN34264.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031425.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 9.7e-33
Identity = 86/134 (64.18%), Postives = 101/134 (75.37%), Query Frame = 0


Query: 3   IGGRIGIGIGLGLGSAPGFNLSLGGGIGIGGRR-GCRSHDPSKKWSQVPNVHDQVTIEIA 62
           IGGRIGIG GL     PGFN+S+GGGIGIGGR+ GC+SH+PSKKW Q+ NV     +E A
Sbjct: 5   IGGRIGIGFGL-----PGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAA 64

Query: 63  KFAVDAFNQKHGNNLVFQAVLEAWVVIVDPFKKEYSIELVAKDCLQRPLKFHAVVVETTG 122
           KFAVDAFN+K+ NNL FQ V EAWV  V+  +KEYSIELVAKDC  R L+FHAVV+E T 
Sbjct: 65  KFAVDAFNKKYENNLEFQYVTEAWVHEVNN-EKEYSIELVAKDCFHRLLEFHAVVIEKTV 124

Query: 123 IH-KTRNLVSFDQI 135
            H K   LVSF++I
Sbjct: 125 DHKKIWILVSFERI 132

The following BLAST results are available for this feature:

BLAST of PI0024298 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024298 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C621	4.4e-39	67.65	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SJV3	2.2e-38	66.91	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
E5GCR5	2.2e-38	66.91	Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A0A0K477	6.3e-38	66.91	PP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067390 PE=4 SV...	[more]
A0A5A7SQL4	4.7e-33	64.18	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0024298 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06875.1	9.1e-39	67.65	phloem filament protein [Cucumis melo var. makuwa]	[more]
ADN34263.1	4.5e-38	66.91	phloem filament protein [Cucumis melo subsp. melo] >KAA0031424.1 phloem filament...	[more]
XP_011658840.2	1.3e-37	66.91	uncharacterized protein LOC105436098 [Cucumis sativus]	[more]
KAE8645826.1	1.3e-37	66.91	hypothetical protein Csa_017081 [Cucumis sativus]	[more]
ADN34264.1	9.7e-33	64.18	phloem filament protein [Cucumis melo subsp. melo] >KAA0031425.1 phloem filament...	[more]

BLAST of PI0024298 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.10		coord: 41..135 e-value: 1.3E-13 score: 52.9
None	No IPR available	PANTHER	PTHR47116:SF5	PHLOEM FILAMENT PROTEIN	coord: 37..134
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 44..132
IPR000010	Cystatin domain	PFAM	PF16845	SQAPI	coord: 51..133 e-value: 1.0E-11 score: 45.0
IPR027214	Cystatin	PANTHER	PTHR47116	PHLOEM FILAMENT PROTEIN	coord: 37..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024298.1	PI0024298.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010951	negative regulation of endopeptidase activity
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity