PI0024124 (gene) Melon (PI 482460) v1

Overview


Name	PI0024124
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr01: 6833921 .. 6834160 (-)
RNA-Seq Expression	PI0024124
Synteny	PI0024124

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCAGAAGCCTCTGTAAACCAACACTTGCAGTTGGTGGAACAAGCCATTGAAAAAATTCGAAAGGGACAATTGGATATGCAACAGTCGATAGTAGATTTGACTAACCTTATCACTCGAATTCATGTGCAACCTTTAGAAGAAGCAAATCGAGAACGACAAGAAGTACCAAGAAACCAAGCTGCAACAAATCAAGAACGTCCAAGAAACCAAGTTGTTTACTTCCATAACAATTAA

mRNA sequence

ATGGACGCAGAAGCCTCTGTAAACCAACACTTGCAGTTGGTGGAACAAGCCATTGAAAAAATTCGAAAGGGACAATTGGATATGCAACAGTCGATAGTAGATTTGACTAACCTTATCACTCGAATTCATGTGCAACCTTTAGAAGAAGCAAATCGAGAACGACAAGAAGTACCAAGAAACCAAGCTGCAACAAATCAAGAACGTCCAAGAAACCAAGTTGTTTACTTCCATAACAATTAA

Coding sequence (CDS)

ATGGACGCAGAAGCCTCTGTAAACCAACACTTGCAGTTGGTGGAACAAGCCATTGAAAAAATTCGAAAGGGACAATTGGATATGCAACAGTCGATAGTAGATTTGACTAACCTTATCACTCGAATTCATGTGCAACCTTTAGAAGAAGCAAATCGAGAACGACAAGAAGTACCAAGAAACCAAGCTGCAACAAATCAAGAACGTCCAAGAAACCAAGTTGTTTACTTCCATAACAATTAA

Protein sequence

MDAEASVNQHLQLVEQAIEKIRKGQLDMQQSIVDLTNLITRIHVQPLEEANRERQEVPRNQAATNQERPRNQVVYFHNN

Homology

[Close]

BLAST of PI0024124 vs. ExPASy TrEMBL
Match: A0A5D3DIZ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001160 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.0e-08
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 28 MQQSIVDLTNLITRIHVQPLEEANRERQEVPRNQAATNQERPRNQVVYFHNN 80
          MQQSIVDLTNL TRIHVQPL EA     + PRNQAA NQE PR+Q V+ HNN
Sbjct: 1  MQQSIVDLTNLFTRIHVQPLGEA----IQPPRNQAAANQEHPRDQAVHIHNN 48

[Close]

BLAST of PI0024124 vs. NCBI nr
Match: KAA0045133.1 (hypothetical protein E6C27_scaffold30G001320 [Cucumis melo var. makuwa] >TYK23604.1 hypothetical protein E5676_scaffold500G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 8.3e-08
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 28 MQQSIVDLTNLITRIHVQPLEEANRERQEVPRNQAATNQERPRNQVVYFHNN 80
          MQQSIVDLTNL TRIHVQPL EA     + PRNQAA NQE PR+Q V+ HNN
Sbjct: 1  MQQSIVDLTNLFTRIHVQPLGEA----IQPPRNQAAANQEHPRDQAVHIHNN 48

The following BLAST results are available for this feature:

BLAST of PI0024124 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024124 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DIZ0	4.0e-08	71.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0024124 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045133.1	8.3e-08	71.15	hypothetical protein E6C27_scaffold30G001320 [Cucumis melo var. makuwa] >TYK2360...	[more]

BLAST of PI0024124 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024124.1	PI0024124.1	mRNA