PI0023974 (gene) Melon (PI 482460) v1

Overview


Name	PI0023974
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	LITAF domain-containing protein
Location	chr11: 1471904 .. 1474750 (+)
RNA-Seq Expression	PI0023974
Synteny	PI0023974

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCCGTGTGGGGCCAGTGCAAACCAATCACAACTAAGAATATATATTTCTTTGTAAGTAAAATATGGGGGAAAAATATAGTGTTTTGACTTCGTAATTATCATTTGAATTCCGTTTTCTATCAACTGCTTCAACAAAATTTCATTGACTTCCATTCCAATATCTTTCTCAATTGCGACCGCACAGAGAGAAGATAGCCAGATACGAAGCTTACCCACCGAAAATGTCCAAGAACGACGAGCCCGTCGTTGGAGTTCCACTCTATGTCGGCAACAACCCCTATCAGGCCGGCCAGATCCCTCCCAACGCCATTTTTGGCCATCCCCAGGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTTTACTGTGTTTATTGTGGAAATTCTGGCCTCACCACCATCAGGTCCCTCTTCTACCTTCTCTCTTCCCCTATATCTACCTTCTTTTCATCTGATTTTCAAATTCTGTGTCTGATTATTCTCTTAATTCTCTTTTCCCTTTTTGTCCGATGGCTCGGTATCCCTTTGTTTGTTGTTAATTGATTTGTGAAATTCAGGTACGGTCATTTTGGATTTCGTTTGTTAAAACATGTATTTGATTGATCAATCATCAATGGGCCTTCCCCTCCTCTTTTTTTTTTTTTGTCTTTGACCTAATTTTCTTCTTTAGGATTAGAATCACTTGTACGCCATCAAATTTCTTGGGCAATGAAACCTTGCTTACAAGATAAGGCAGGAATTTTCTTTGCTCTAACAATGGATTGAAATGAAATGATTTGGAGTGACGTTTACCCAATTTACTCGAAATGTCTTTTATATTGGATTCATAATCGTCTGCATTCAAACTCTTGTGTTGTCCAATTATGTTTACTTTGCTGCTTGTGTTTGGTATCTTGCATAAAACTTAATGGATCCACGGCTGTTACTTTGTTTTGGAATTTTTGTAAACACTAAGTCAGAATACATGTGGAAGGTAGATAGAATTCAAGGACTCCCAAATGGTGTACACCATACAAAGTTCTGTTTGGATGTAAAAAATTCAAATTGTTTACTTTTACATAAGATGCTCTCCCTTCTTTACAAATAGAATTTATGAGCAATTTGAAAACTTTATCATGTTGGGCTTGTCAATTAAATCTAATCTGTTGGTGTCGCATTGAAATTTATTTTCTGTTCATCAACAAAAACTAAGAAAATTTCAATAGTAGCATAAATAATAGGTTATGATGTTACAATGTTAGTTTTTAGTGAGAACTTCATTTTAAATATATACCCAAATAGTAGGACTGTATACACTCAGACAAGAATGTCTTGCTTATAAGCTCAAGACTTGTTGTAGCAGGGTATCGGTATGATTTATCATGGTTAGGCAGCAAAAGTTTTTATATAATTGTTTGTTTAAACAGTTGAATAATTGTGCGTCCTCTTCATCTGATTTTGATGCTTTTCTGATCTCCCAGATCAAAGATAAGTTCAGCTGCTGTCGTCGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTATGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTATAGCTATTTCCGGTGCTTGTTCATTCTTTCAGTTGCTTCTTGTAATCAGCATTTTGATTATTTGAAACTTTGCTCTATTATAGATAATTGGAGTAATTGACTGTACAATCCATTATCCATCTTTTGTTTAGGTTGGTGATTTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACATTGGACACAGCCAAGCTACGCGTTGCCTGGTTGATTTTGAGGAGCTGCTATTTTCCCGTGTGGATATTTAGCATCATCTGCATTCAGTACTTGCGATACTCTTGTGCTATTTTTGTGATGTTCTTGTTACACTTAGGGATAGACACAGTTTGGATATCTTTCCATATATACAATTGTGATAGAACCAAGTACATGTTTTGTTTTTTATATCTTACCGCTTGTGAATACCTTGTTCTTACATTGGCATTGCTGTTTATGTACAATACTGCTAGCCTAATTTGGACCAATCTTTCCATAGACCTCTTGATCTTGATCATTCATCTCACTACTGGAAATGGTATGCATTTGTCCAATTCATTTCCTTGAATCATATCCACGGGGTTTCTTTTTCTTCTTGATTTGATTATTGAAACAAATTCAAAAGCAAAGATGGGTTGCCATGGTCTGCTTGAATTCTGATCAATAATGTTACCATCTGGTTCCACACAAGTAAACAATGAAGAAACATCTTGGAAAAGATAATATACCTGACTTCAATGGGGTCTTGAACAGATACAGGGAAAAAGAATTGAAGTCGGATACCGAGGTTTGCAATGTGGAAGTGAAGGTTCAACATGAGAAATAAGAGCTGGTCTCGATAGCCAAAGAGACTGCCTGCATGGATATGACACAACGGAGTTTGATGGCAGCCTTTTGTAGATAATCCCTTCATGACGAAGTTGCAATCTGCAGGCAAGTCATCCTTGGCTACAATACACGACTCTCCATTCCCATGTTGAACCTTCCTTCCTCATAAATCAGGTAAAGAATTAAAGCGTCCTGTTGTATGTTGAATGCAAAAGTTGTGTCCTTTAAGAACCAAAAGGGGATTCTATGTATATATGTATGTATATATGTTTGTATGTGTGCGTTGGAGTTTGGTTTTTATAAGTTAAAATTATTAGCTGCAGCTCAAGAAGAACAATAGACTGCAATCTACACTCATCGAGGTGTTTCTGTCTTCGAATATATTCTGTATAATTGGAGTTGTAAAATTTTCTCTTGGCTATTTCTATAGATCAAC

mRNA sequence

TTTCCGTGTGGGGCCAGTGCAAACCAATCACAACTAAGAATATATATTTCTTTGTAAGTAAAATATGGGGGAAAAATATAGTGTTTTGACTTCGTAATTATCATTTGAATTCCGTTTTCTATCAACTGCTTCAACAAAATTTCATTGACTTCCATTCCAATATCTTTCTCAATTGCGACCGCACAGAGAGAAGATAGCCAGATACGAAGCTTACCCACCGAAAATGTCCAAGAACGACGAGCCCGTCGTTGGAGTTCCACTCTATGTCGGCAACAACCCCTATCAGGCCGGCCAGATCCCTCCCAACGCCATTTTTGGCCATCCCCAGGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTTTACTGTGTTTATTGTGGAAATTCTGGCCTCACCACCATCAGATCAAAGATAAGTTCAGCTGCTGTCGTCGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTATGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACATTGGACACAGCCAAGCTACGCGTTGCCTGGTTGATTTTGAGGAGCTGCTATTTTCCCGTGTGGATATTTAGCATCATCTGCATTCAGTACTTGCGATACTCTTGTGCTATTTTTGTGATGTTCTTGTTACACTTAGGGATAGACACAGTTTGGATATCTTTCCATATATACAATTGTGATAGAACCAAGTACATGTTTTGTTTTTTATATCTTACCGCTTGTGAATACCTTGTTCTTACATTGGCATTGCTGTTTATGTACAATACTGCTAGCCTAATTTGGACCAATCTTTCCATAGACCTCTTGATCTTGATCATTCATCTCACTACTGGAAATGGTATGCATTTGTCCAATTCATTTCCTTGAATCATATCCACGGGGTTTCTTTTTCTTCTTGATTTGATTATTGAAACAAATTCAAAAGCAAAGATGGGTTGCCATGGTCTGCTTGAATTCTGATCAATAATGTTACCATCTGGTTCCACACAAGTAAACAATGAAGAAACATCTTGGAAAAGATAATATACCTGACTTCAATGGGGTCTTGAACAGATACAGGGAAAAAGAATTGAAGTCGGATACCGAGGTTTGCAATGTGGAAGTGAAGGTTCAACATGAGAAATAAGAGCTGGTCTCGATAGCCAAAGAGACTGCCTGCATGGATATGACACAACGGAGTTTGATGGCAGCCTTTTGTAGATAATCCCTTCATGACGAAGTTGCAATCTGCAGGCAAGTCATCCTTGGCTACAATACACGACTCTCCATTCCCATGTTGAACCTTCCTTCCTCATAAATCAGGTAAAGAATTAAAGCGTCCTGTTGTATGTTGAATGCAAAAGTTGTGTCCTTTAAGAACCAAAAGGGGATTCTATGTATATATGTATGTATATATGTTTGTATGTGTGCGTTGGAGTTTGGTTTTTATAAGTTAAAATTATTAGCTGCAGCTCAAGAAGAACAATAGACTGCAATCTACACTCATCGAGGTGTTTCTGTCTTCGAATATATTCTGTATAATTGGAGTTGTAAAATTTTCTCTTGGCTATTTCTATAGATCAAC

Coding sequence (CDS)

ATGTCCAAGAACGACGAGCCCGTCGTTGGAGTTCCACTCTATGTCGGCAACAACCCCTATCAGGCCGGCCAGATCCCTCCCAACGCCATTTTTGGCCATCCCCAGGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTTTACTGTGTTTATTGTGGAAATTCTGGCCTCACCACCATCAGATCAAAGATAAGTTCAGCTGCTGTCGTCGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTATGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACATTGGACACAGCCAAGCTACGCGTTGCCTGGTTGA

Protein sequence

MSKNDEPVVGVPLYVGNNPYQAGQIPPNAIFGHPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

Homology

[Close]

BLAST of PI0023974 vs. ExPASy Swiss-Prot
Match: Q94CD4 (GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-55
Identity = 94/133 (70.68%), Postives = 105/133 (78.95%), Query Frame = 0


Query: 1   MSKNDEPVVGVPLYVGNNPYQAGQIPPNAIFGHPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           M+K    V+GVP Y G NPYQAG +PPNAI+G P G PIQQT+YRDTPAPF C+YCGN+G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT +RSK   AAVV CMMPFMLG CFLCPSMDCLW+K H+CP C  KV DFEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPPHWTQPSYALP 134
           DPP W QPS+ALP
Sbjct: 121 DPPQWKQPSFALP 133

[Close]

BLAST of PI0023974 vs. ExPASy TrEMBL
Match: A0A0A0KDG7 (LITAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091950 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 8.4e-75
Identity = 130/134 (97.01%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MSKNDEPVVGVPLYVGNNPYQAGQIPPNAIFGHPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKN EPVVGVPLYVGNNPYQAGQIPPNAIFG P GVPIQQTMYRDTPAPF CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of PI0023974 vs. ExPASy TrEMBL
Match: A0A5D3DMB0 (Zf-LITAF-like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002020 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.1e-74
Identity = 130/134 (97.01%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MSKNDEPVVGVPLYVGNNPYQAGQIPPNAIFGHPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKN EPVVGVPLYVGNNPYQAGQIPPNAIFG PQGVPIQQTMYRDTPAPF CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of PI0023974 vs. ExPASy TrEMBL
Match: A0A1S3CCH3 (uncharacterized protein LOC103498881 OS=Cucumis melo OX=3656 GN=LOC103498881 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.2e-74
Identity = 129/134 (96.27%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MSKNDEPVVGVPLYVGNNPYQAGQIPPNAIFGHPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKN EPVVGVPLYVGNNPYQAGQIPPN IFG PQGVPIQQTMYRDTPAPF CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNPIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of PI0023974 vs. ExPASy TrEMBL
Match: A0A6J1JVN9 (GSH-induced LITAF domain protein OS=Cucurbita maxima OX=3661 GN=LOC111488277 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 5.6e-71
Identity = 122/133 (91.73%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MSKNDEPVVGVPLYVGNNPYQAGQIPPNAIFGHPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKNDEPVVG+P YVGNN YQAGQIPPNAIFGHPQGVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNDEPVVGIPFYVGNNSYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDACAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSFALP 133

[Close]

BLAST of PI0023974 vs. ExPASy TrEMBL
Match: A0A6J1GS01 (GSH-induced LITAF domain protein OS=Cucurbita moschata OX=3662 GN=LOC111456579 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.6e-71
Identity = 122/133 (91.73%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MSKNDEPVVGVPLYVGNNPYQAGQIPPNAIFGHPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKNDEPVVG+P YVGNN YQAGQIPPNAIFGHPQGVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSFALP 133

[Close]

BLAST of PI0023974 vs. NCBI nr
Match: XP_004140553.1 (GSH-induced LITAF domain protein [Cucumis sativus] >KGN46422.1 hypothetical protein Csa_005550 [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 1.7e-74
Identity = 130/134 (97.01%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MSKNDEPVVGVPLYVGNNPYQAGQIPPNAIFGHPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKN EPVVGVPLYVGNNPYQAGQIPPNAIFG P GVPIQQTMYRDTPAPF CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of PI0023974 vs. NCBI nr
Match: KAA0039847.1 (zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa] >TYK24652.1 zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 288.9 bits (738), Expect = 2.3e-74
Identity = 130/134 (97.01%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MSKNDEPVVGVPLYVGNNPYQAGQIPPNAIFGHPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKN EPVVGVPLYVGNNPYQAGQIPPNAIFG PQGVPIQQTMYRDTPAPF CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of PI0023974 vs. NCBI nr
Match: XP_008459901.1 (PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 8.6e-74
Identity = 129/134 (96.27%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MSKNDEPVVGVPLYVGNNPYQAGQIPPNAIFGHPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKN EPVVGVPLYVGNNPYQAGQIPPN IFG PQGVPIQQTMYRDTPAPF CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNPIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of PI0023974 vs. NCBI nr
Match: XP_022991744.1 (GSH-induced LITAF domain protein [Cucurbita maxima])

HSP 1 Score: 276.6 bits (706), Expect = 1.2e-70
Identity = 122/133 (91.73%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MSKNDEPVVGVPLYVGNNPYQAGQIPPNAIFGHPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKNDEPVVG+P YVGNN YQAGQIPPNAIFGHPQGVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNDEPVVGIPFYVGNNSYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDACAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSFALP 133

[Close]

BLAST of PI0023974 vs. NCBI nr
Match: XP_022954275.1 (GSH-induced LITAF domain protein [Cucurbita moschata] >XP_023547364.1 GSH-induced LITAF domain protein [Cucurbita pepo subsp. pepo] >KAG6576107.1 GSH-induced LITAF domain protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014627.1 GSH-induced LITAF domain protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.8 bits (704), Expect = 2.0e-70
Identity = 122/133 (91.73%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MSKNDEPVVGVPLYVGNNPYQAGQIPPNAIFGHPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKNDEPVVG+P YVGNN YQAGQIPPNAIFGHPQGVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSFALP 133

[Close]

BLAST of PI0023974 vs. TAIR 10
Match: AT5G13190.1 (CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 217.2 bits (552), Expect = 7.8e-57
Identity = 94/133 (70.68%), Postives = 105/133 (78.95%), Query Frame = 0


Query: 1   MSKNDEPVVGVPLYVGNNPYQAGQIPPNAIFGHPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           M+K    V+GVP Y G NPYQAG +PPNAI+G P G PIQQT+YRDTPAPF C+YCGN+G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT +RSK   AAVV CMMPFMLG CFLCPSMDCLW+K H+CP C  KV DFEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPPHWTQPSYALP 134
           DPP W QPS+ALP
Sbjct: 121 DPPQWKQPSFALP 133

The following BLAST results are available for this feature:

BLAST of PI0023974 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CD4	1.1e-55	70.68	GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV...	[more]

BLAST of PI0023974 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDG7	8.4e-75	97.01	LITAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091950 PE=3 ...	[more]
A0A5D3DMB0	1.1e-74	97.01	Zf-LITAF-like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3CCH3	4.2e-74	96.27	uncharacterized protein LOC103498881 OS=Cucumis melo OX=3656 GN=LOC103498881 PE=...	[more]
A0A6J1JVN9	5.6e-71	91.73	GSH-induced LITAF domain protein OS=Cucurbita maxima OX=3661 GN=LOC111488277 PE=...	[more]
A0A6J1GS01	9.6e-71	91.73	GSH-induced LITAF domain protein OS=Cucurbita moschata OX=3662 GN=LOC111456579 P...	[more]

BLAST of PI0023974 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140553.1	1.7e-74	97.01	GSH-induced LITAF domain protein [Cucumis sativus] >KGN46422.1 hypothetical prot...	[more]
KAA0039847.1	2.3e-74	97.01	zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa] >TYK24652.1 z...	[more]
XP_008459901.1	8.6e-74	96.27	PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]	[more]
XP_022991744.1	1.2e-70	91.73	GSH-induced LITAF domain protein [Cucurbita maxima]	[more]
XP_022954275.1	2.0e-70	91.73	GSH-induced LITAF domain protein [Cucurbita moschata] >XP_023547364.1 GSH-induce...	[more]

BLAST of PI0023974 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13190.1	7.8e-57	70.68	CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (Inte...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006629	LPS-induced tumour necrosis factor alpha factor	SMART	SM00714	litaf	coord: 48..113 e-value: 2.6E-13 score: 60.2
IPR006629	LPS-induced tumour necrosis factor alpha factor	PFAM	PF10601	zf-LITAF-like	coord: 46..110 e-value: 7.7E-13 score: 48.5
IPR006629	LPS-induced tumour necrosis factor alpha factor	PROSITE	PS51837	LITAF	coord: 33..113 score: 11.367635
None	No IPR available	PANTHER	PTHR23292:SF37	BNAC09G43880D PROTEIN	coord: 3..126
IPR037519	LITAF domain containing protein	PANTHER	PTHR23292	LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR	coord: 3..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023974.1	PI0023974.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding