PI0023631 (gene) Melon (PI 482460) v1

Overview


Name	PI0023631
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr04: 25683177 .. 25684164 (+)
RNA-Seq Expression	PI0023631
Synteny	PI0023631

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAGTTCCTCTCGGGCCCCCAAACACATCTGGACGAAGGAGGAAGAGTCGTACCTGGTCGAGGCCTTGGTGAAGTTGGTATCTGTCGGCGGCTGGAAGTCAGACAACGGTACCTTCCGTCCTAGGTACCTGGCACAGCTATAGAAAATGCTGGCAGAGAAGATGCCAGGATGTAATATCCAGGGTTCACCAAAAATAGACTGTCAGATCAAAAACATGAAGAAAACATTTCAGGGCATTGCAAAAATGCGTGCGACGTCATGTAGTGGGTTTGATTGGAAGGATGAAGTGAAGTGCATCATCTCTAAGAAAGAGTTGTTTGATTATTGGATGAAGGTAAGTTATTCATTATGAAAATAAGATGTTCGTTTATAATAGAAAAAAACTAACAATTTATTTAAAACCTTGAACAGAGTCATCCTGCTGTGAAAGGCCTCCTAAACAAGCCATTTCCCTATTACGACGACCTGTGCTACGTATTTGGGAAGGATCGTGCGATGGAAGCTCATGCGGAGACATTTGCCGATGTCGGGTTGAATGTACCTAGAGGATTCGAGGGATTTCCCGCTGATTATGGAAACGATACCCTATGATGTACAGTCAGGGACTAGACATGTCGCCTAATGACATCGTAGGCTCACGACCCCGTCGCTCGATGGAGGGTAGGACTGGTTCAAGTAGACCGAAGAGGAAGCAAGGAGGCCAGGCAGTACAGACTGTGGAGATCATTCAGAATGCAATAGACTTCACCAACGACCAGTTGAAGGCCATTGCAGAGTGGCTGAATTTACAACATCAAGATGAATGCGTCGCTTGTGACGAAGTCGTTAACCAGATACAGGGCATCCCTGAACTAAGTACCCGCGACAAGTTGCGCCTTATGCGAATACTGCTATGTAGTGTGAACGACATGAAAGCATTCTTGAAGGTACCCAATGAGCTTAAGCTGGAATACTGCACGGTCATTCTCGAAGAGAACGTTTGA

mRNA sequence

ATGCCAAGTTCCTCTCGGGCCCCCAAACACATCTGGACGAAGGAGGAAGAGTCGTACCTGGTCGAGGCCTTGGTGAAGTTGGTATCTGTCGGCGGCTGGAAGTCAGACAACGGTACCTTCCGTCCTAGTGGGTTTGATTGGAAGGATGAAGTGAAGTGCATCATCTCTAAGAAAGAGTTGTTTGATTATTGGATGAAGAGTCATCCTGCTGTGAAAGGCCTCCTAAACAAGCCATTTCCCTATTACGACGACCTGTGCTACGTATTTGGGAAGGATCGTGCGATGGAAGCTCATGCGGAGACATTTGCCGATGTCGGGTTGAATGGACTAGACATGTCGCCTAATGACATCGTAGGCTCACGACCCCGTCGCTCGATGGAGGGTAGGACTGGTTCAAGTAGACCGAAGAGGAAGCAAGGAGGCCAGGCAGTACAGACTGTGGAGATCATTCAGAATGCAATAGACTTCACCAACGACCAGTTGAAGGCCATTGCAGAGTGGCTGAATTTACAACATCAAGATGAATGCGTCGCTTGTGACGAAGTCGTTAACCAGATACAGGGCATCCCTGAACTAAGTACCCGCGACAAGTTGCGCCTTATGCGAATACTGCTATGTAGTGTGAACGACATGAAAGCATTCTTGAAGGTACCCAATGAGCTTAAGCTGGAATACTGCACGGTCATTCTCGAAGAGAACGTTTGA

Coding sequence (CDS)

ATGCCAAGTTCCTCTCGGGCCCCCAAACACATCTGGACGAAGGAGGAAGAGTCGTACCTGGTCGAGGCCTTGGTGAAGTTGGTATCTGTCGGCGGCTGGAAGTCAGACAACGGTACCTTCCGTCCTAGTGGGTTTGATTGGAAGGATGAAGTGAAGTGCATCATCTCTAAGAAAGAGTTGTTTGATTATTGGATGAAGAGTCATCCTGCTGTGAAAGGCCTCCTAAACAAGCCATTTCCCTATTACGACGACCTGTGCTACGTATTTGGGAAGGATCGTGCGATGGAAGCTCATGCGGAGACATTTGCCGATGTCGGGTTGAATGGACTAGACATGTCGCCTAATGACATCGTAGGCTCACGACCCCGTCGCTCGATGGAGGGTAGGACTGGTTCAAGTAGACCGAAGAGGAAGCAAGGAGGCCAGGCAGTACAGACTGTGGAGATCATTCAGAATGCAATAGACTTCACCAACGACCAGTTGAAGGCCATTGCAGAGTGGCTGAATTTACAACATCAAGATGAATGCGTCGCTTGTGACGAAGTCGTTAACCAGATACAGGGCATCCCTGAACTAAGTACCCGCGACAAGTTGCGCCTTATGCGAATACTGCTATGTAGTGTGAACGACATGAAAGCATTCTTGAAGGTACCCAATGAGCTTAAGCTGGAATACTGCACGGTCATTCTCGAAGAGAACGTTTGA

Protein sequence

MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRPSGFDWKDEVKCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLNGLDMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVILEENV

Homology

[Close]

BLAST of PI0023631 vs. ExPASy TrEMBL
Match: A0A5A7TMW5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001350 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 3.2e-61
Identity = 136/303 (44.88%), Postives = 176/303 (58.09%), Query Frame = 0


Query: 1   MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP------------------ 60
           M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTFRP                  
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 61  ----------------------------SGFDWKDEVKCIISKKELFDYWMKSHPAVKGL 120
                                       SGF W DE KCII++KE+FD W  SHPA KGL
Sbjct: 61  NHASTIDSRIKLMKRMFHALAEMCGPNCSGFGWNDEKKCIIAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GL 180
           LNK F +YD+L YVFGKDRA    AE+FAD+G N                        GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGDRAESFADIGSNDPAGYDAFAADIVPDTDFPPMYSPGL 180

Query: 181 DMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNL 234
           +MSP+D++ +R  R  E R  SS  KRK+ G A+ + +I++ AI++ N+QL  IAEW  L
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHAIDSGDIVRTAIEYGNEQLHRIAEWSIL 240

[Close]

BLAST of PI0023631 vs. ExPASy TrEMBL
Match: A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 5.4e-61
Identity = 131/272 (48.16%), Postives = 174/272 (63.97%), Query Frame = 0


Query: 1   MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRPSGFD-------WKDEV-- 60
           M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTF P   +       +K  V  
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFLPGYLNQLARMMAFKIPVVL 60

Query: 61  ------KCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADV 120
                 KCII++KE+FD W+KSHPA KGLLNK F +YD+L YVFGKDRA    AE+FAD+
Sbjct: 61  GGMMKKKCIIAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADI 120

Query: 121 GLN------------------------GLDMSPNDIVGSRPRRSMEGRTGSSRPKRKQGG 180
           G N                        GL+MSP+D++ +R  R  E R  SS  KRK+ G
Sbjct: 121 GSNDPAGYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSG 180

Query: 181 QAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLM 234
            A  + +I++ A+++ N+QL  IAEW  LQ QD      E+V Q++ IPEL+  D+ RLM
Sbjct: 181 HATDSGDIVRTAMEYGNEQLHRIAEWPILQRQDATETRQEIVRQLEVIPELTLMDRCRLM 240

[Close]

BLAST of PI0023631 vs. ExPASy TrEMBL
Match: A0A5A7TS39 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00750 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 7.1e-61
Identity = 128/272 (47.06%), Postives = 172/272 (63.24%), Query Frame = 0


Query: 1   MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRPSGFDWKDEV--------- 60
           M SSSR PKH WTKEEE+ LVE LV LV+ GGW+S+NGTFRP   +    +         
Sbjct: 1   MTSSSRLPKHTWTKEEEASLVECLVGLVNAGGWRSNNGTFRPGYLNQLARMMAFKILVVL 60

Query: 61  ------KCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADV 120
                 KCI+++K++FD W+KSHPA KGLLNK F +YD+L YVFGKDRA     E+FAD+
Sbjct: 61  GGMMKKKCIVTEKQVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRVESFADI 120

Query: 121 GLN------------------------GLDMSPNDIVGSRPRRSMEGRTGSSRPKRKQGG 180
           G N                        GL+MSP+D++ +R  R  E R  SSR KRK+ G
Sbjct: 121 GSNDPARYDAFAADAAADTNFSPMYSPGLNMSPDDLMETRTARVSERRNVSSRSKRKRIG 180

Query: 181 QAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLM 234
            A  + +I++ AI++ N+QL  IAEW  LQ QD      E+V Q++ IPEL+  D+ RLM
Sbjct: 181 HATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLM 240

[Close]

BLAST of PI0023631 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.2e-60
Identity = 135/303 (44.55%), Postives = 174/303 (57.43%), Query Frame = 0


Query: 1   MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP------------------ 60
           M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTFRP                  
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ----------------------------SGFDWKDEVKCIISKKELFDYWMKSHPAVKGL 120
                                       SGF W DE KCI+++KE+FD W  SHPA KGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GL 180
           LNK F +YD+L YVFGKDRA    AE+FAD+G N                        GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNL 234
           +MSP+D++ +R  R  E R  SS  KRK+ G A  + +I++ AI++ N+QL  IAEW  L
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

[Close]

BLAST of PI0023631 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.2e-60
Identity = 135/303 (44.55%), Postives = 174/303 (57.43%), Query Frame = 0


Query: 1   MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP------------------ 60
           M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTFRP                  
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ----------------------------SGFDWKDEVKCIISKKELFDYWMKSHPAVKGL 120
                                       SGF W DE KCI+++KE+FD W  SHPA KGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GL 180
           LNK F +YD+L YVFGKDRA    AE+FAD+G N                        GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNL 234
           +MSP+D++ +R  R  E R  SS  KRK+ G A  + +I++ AI++ N+QL  IAEW  L
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

[Close]

BLAST of PI0023631 vs. NCBI nr
Match: KAA0044843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 245.0 bits (624), Expect = 6.6e-61
Identity = 136/303 (44.88%), Postives = 176/303 (58.09%), Query Frame = 0


Query: 1   MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP------------------ 60
           M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTFRP                  
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 61  ----------------------------SGFDWKDEVKCIISKKELFDYWMKSHPAVKGL 120
                                       SGF W DE KCII++KE+FD W  SHPA KGL
Sbjct: 61  NHASTIDSRIKLMKRMFHALAEMCGPNCSGFGWNDEKKCIIAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GL 180
           LNK F +YD+L YVFGKDRA    AE+FAD+G N                        GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGDRAESFADIGSNDPAGYDAFAADIVPDTDFPPMYSPGL 180

Query: 181 DMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNL 234
           +MSP+D++ +R  R  E R  SS  KRK+ G A+ + +I++ AI++ N+QL  IAEW  L
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHAIDSGDIVRTAIEYGNEQLHRIAEWSIL 240

[Close]

BLAST of PI0023631 vs. NCBI nr
Match: KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 244.2 bits (622), Expect = 1.1e-60
Identity = 131/272 (48.16%), Postives = 174/272 (63.97%), Query Frame = 0


Query: 1   MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRPSGFD-------WKDEV-- 60
           M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTF P   +       +K  V  
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFLPGYLNQLARMMAFKIPVVL 60

Query: 61  ------KCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADV 120
                 KCII++KE+FD W+KSHPA KGLLNK F +YD+L YVFGKDRA    AE+FAD+
Sbjct: 61  GGMMKKKCIIAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADI 120

Query: 121 GLN------------------------GLDMSPNDIVGSRPRRSMEGRTGSSRPKRKQGG 180
           G N                        GL+MSP+D++ +R  R  E R  SS  KRK+ G
Sbjct: 121 GSNDPAGYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSG 180

Query: 181 QAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLM 234
            A  + +I++ A+++ N+QL  IAEW  LQ QD      E+V Q++ IPEL+  D+ RLM
Sbjct: 181 HATDSGDIVRTAMEYGNEQLHRIAEWPILQRQDATETRQEIVRQLEVIPELTLMDRCRLM 240

[Close]

BLAST of PI0023631 vs. NCBI nr
Match: KAA0046363.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 243.8 bits (621), Expect = 1.5e-60
Identity = 128/272 (47.06%), Postives = 172/272 (63.24%), Query Frame = 0


Query: 1   MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRPSGFDWKDEV--------- 60
           M SSSR PKH WTKEEE+ LVE LV LV+ GGW+S+NGTFRP   +    +         
Sbjct: 1   MTSSSRLPKHTWTKEEEASLVECLVGLVNAGGWRSNNGTFRPGYLNQLARMMAFKILVVL 60

Query: 61  ------KCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADV 120
                 KCI+++K++FD W+KSHPA KGLLNK F +YD+L YVFGKDRA     E+FAD+
Sbjct: 61  GGMMKKKCIVTEKQVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRVESFADI 120

Query: 121 GLN------------------------GLDMSPNDIVGSRPRRSMEGRTGSSRPKRKQGG 180
           G N                        GL+MSP+D++ +R  R  E R  SSR KRK+ G
Sbjct: 121 GSNDPARYDAFAADAAADTNFSPMYSPGLNMSPDDLMETRTARVSERRNVSSRSKRKRIG 180

Query: 181 QAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLM 234
            A  + +I++ AI++ N+QL  IAEW  LQ QD      E+V Q++ IPEL+  D+ RLM
Sbjct: 181 HATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLM 240

[Close]

BLAST of PI0023631 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 243.0 bits (619), Expect = 2.5e-60
Identity = 135/303 (44.55%), Postives = 174/303 (57.43%), Query Frame = 0


Query: 1   MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP------------------ 60
           M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTFRP                  
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ----------------------------SGFDWKDEVKCIISKKELFDYWMKSHPAVKGL 120
                                       SGF W DE KCI+++KE+FD W  SHPA KGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GL 180
           LNK F +YD+L YVFGKDRA    AE+FAD+G N                        GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNL 234
           +MSP+D++ +R  R  E R  SS  KRK+ G A  + +I++ AI++ N+QL  IAEW  L
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

[Close]

BLAST of PI0023631 vs. NCBI nr
Match: KAA0038122.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0055248.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97185.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK00369.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 243.0 bits (619), Expect = 2.5e-60
Identity = 135/303 (44.55%), Postives = 174/303 (57.43%), Query Frame = 0


Query: 1   MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP------------------ 60
           M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTFRP                  
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ----------------------------SGFDWKDEVKCIISKKELFDYWMKSHPAVKGL 120
                                       SGF W DE KCI+++KE+FD W  SHPA KGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GL 180
           LNK F +YD+L YVFGKDRA    AE+FAD+G N                        GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNL 234
           +MSP+D++ +R  R  E R  SS  KRK+ G A  + +I++ AI++ N+QL  IAEW  L
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

[Close]

BLAST of PI0023631 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 4.6e-04
Identity = 15/50 (30.00%), Postives = 28/50 (56.00%), Query Frame = 0


Query: 41  RPSGFDWKDEVKCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFG 91
           R  GF W +E + + +   ++  ++K+H   +  + +P PYY DLC + G
Sbjct: 256 RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCG 305

[Close]

BLAST of PI0023631 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 42.7 bits (99), Expect = 4.6e-04
Identity = 15/50 (30.00%), Postives = 28/50 (56.00%), Query Frame = 0


Query: 41  RPSGFDWKDEVKCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFG 91
           R  GF W +E + + +   ++  ++K+H   +  + +P PYY DLC + G
Sbjct: 256 RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCG 305

The following BLAST results are available for this feature:

BLAST of PI0023631 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023631 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TMW5	3.2e-61	44.88	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TYQ6	5.4e-61	48.16	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TS39	7.1e-61	47.06	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UME4	1.2e-60	44.55	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DPR5	1.2e-60	44.55	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0023631 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044843.1	6.6e-61	44.88	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048280.1	1.1e-60	48.16	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0046363.1	1.5e-60	47.06	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035621.1	2.5e-60	44.55	retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon...	[more]
KAA0038122.1	2.5e-60	44.55	retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon...	[more]

BLAST of PI0023631 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02210.1	4.6e-04	30.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	4.6e-04	30.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..142
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 4..42 coord: 43..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023631.1	PI0023631.1	mRNA