PI0023540 (gene) Melon (PI 482460) v1

Overview


Name	PI0023540
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr05: 10529456 .. 10529667 (-)
RNA-Seq Expression	PI0023540
Synteny	PI0023540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAACGTTTAGAGGGTACTGAGAAAGAAGTTTTGGGCCTTAAGGAGACGATGCTCGAACTCAAGAAAGCAGTGGAAAGAATAGTTGAGGACATGAGGAAAAATAGCTCGTACCGAAGAAGAGAAGAATCGGGCACTTTCAATGGTTCAGTGATGAAACTCAAAAGAAAAATGGGGGATCCAAAAACTCCAATGGACAACACGACTAG

mRNA sequence

ATGGAGGAACGTTTAGAGGGTACTGAGAAAGAAGTTTTGGGCCTTAAGGAGACGATGCTCGAACTCAAGAAAGCAGTGGAAAGAATAAAGAGAAGAATCGGGCACTTTCAATGGTTCAGTGATGAAACTCAAAAGAAAAATGGGGGATCCAAAAACTCCAATGGACAACACGACTAG

Coding sequence (CDS)

ATGGAGGAACGTTTAGAGGGTACTGAGAAAGAAGTTTTGGGCCTTAAGGAGACGATGCTCGAACTCAAGAAAGCAGTGGAAAGAATAAAGAGAAGAATCGGGCACTTTCAATGGTTCAGTGATGAAACTCAAAAGAAAAATGGGGGATCCAAAAACTCCAATGGACAACACGACTAG

Protein sequence

MEERLEGTEKEVLGLKETMLELKKAVERIKRRIGHFQWFSDETQKKNGGSKNSNGQHD

Homology

[Close]

BLAST of PI0023540 vs. ExPASy TrEMBL
Match: A0A5D3DR62 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00360 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.7e-06
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 1  MEERLEGTEKEVLGLKETMLELKKAVERI-----KRRIG-----HFQWFSDETQKKN 48
          MEERLEGTEKEVLGLKE MLELKKAV+++     K  IG     +F+W SDETQ KN
Sbjct: 1  MEERLEGTEKEVLGLKEVMLELKKAVDQMANDMRKVFIGGEMSQYFRWVSDETQGKN 57

[Close]

BLAST of PI0023540 vs. NCBI nr
Match: TYK25829.1 (uncharacterized protein E5676_scaffold436G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 9.7e-06
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 1  MEERLEGTEKEVLGLKETMLELKKAVERI-----KRRIG-----HFQWFSDETQKKN 48
          MEERLEGTEKEVLGLKE MLELKKAV+++     K  IG     +F+W SDETQ KN
Sbjct: 1  MEERLEGTEKEVLGLKEVMLELKKAVDQMANDMRKVFIGGEMSQYFRWVSDETQGKN 57

The following BLAST results are available for this feature:

BLAST of PI0023540 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DR62	4.7e-06	64.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0023540 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK25829.1	9.7e-06	64.91	uncharacterized protein E5676_scaffold436G00360 [Cucumis melo var. makuwa]	[more]

BLAST of PI0023540 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023540.1	PI0023540.1	mRNA