PI0023441 (gene) Melon (PI 482460) v1

Overview


Name	PI0023441
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr09: 7374264 .. 7376707 (-)
RNA-Seq Expression	PI0023441
Synteny	PI0023441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGACGATGCTTCGCCATTTTATGCCATCTACTAAGGACTACTGCTGGTTTACAGTCTACCGAAATTATCGATGTCGAAGAAATAGTGGCCATGCTCCTTCACGTACTTGTGCACGATGTGAAAAATCGTGTCATTCAACGTGACTTCCTACGGTCCGGTGACACGATTTCACGACATTTCAACCTGGTACTGCTGGCTGTTTTACGCCTTTTTGACGAGCTGTTGGCGAAACCACAACCGGTGACGAACGGTTGCACAGATGCACAATGGAGGTGGTTCGAGGTACGATTTCAATTGCCACAGTCCAAACATCAATACCGCGTATTTTTTCGGTCTCATGATCGCATTATGTACACGTTGCAGAATTACCTTAGTGCACTAGACGACACGTACATCAAGGTGAACTTGATGGCAAGTGAACGACCACGATACAGAACACGAAAGGGTGAAGTTGTAACAAGCGTGCTTGGGGTATGTGATACGAAAAGAGATTTCGTTTTCGTGTTAGCCGGCTGGGAGGGTTCCGCTGCGGACTCGCGCATCCTTCGAGATGCCATTTCTAGACCGAACGGACTGAGTGTGCCGAAGGGTAAATGCAATAACGCAATCCTTCTGAGTACGTTCTTTCCTTCTTGACTATTTGCATTAACAGTGGCGTTCGTTTCACTAGGGTATTACTACTTGTGCGACGCGGGGTACCCTAATGTAAATGGTTTTTTAGCTTCGTACCGAGGGCAACGATACCACCTACAGGAGTGGCACGGAGCGGGCAATTCACCGACAACAGCGAAAGAGTTCTTCAATATGAAGCATTCCTTCGCACGGAATGTCATTGAAAGAGCCTTCAGTCTGTTGAAGGGGCGATGTCAATCCTCCGAGGAAAGTCCTATTACCCCGTCAAAGTTCAAACTCGGACGATACTTACATGTTGTTTACTGAACAATCTCGTAAATAAGGAGATGACGAACAATGACGTACCAGATGACATTGATGAGGGTGACTCTACATACGCCACCACTGGCGGTGAAGTTATTCATTACATAGAGACCTCGAGTGCGTGGAGTCAATGGAGGGACGAGCTTGCCAAATAAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAACACCCAACCTTCAAGTCCCCTAAATTGTAATTATACACCAGTTGGCATATTGTGTGTATTTCCGTACGATGACAATTAAATATATGTATTAACATAGTGATTATTGACGTAATGCAGAATTCGCACCTGGTTTTGTTTGTTACATTAATTTATTCTTATTTTCTTTTCTAGTATGACAACTTCTTCAAGGGCCCCAAAGCACCACTGGACGAAAGAGGAGGATGCCACCCTCGTTGAATGTTTGGTAGAATTGGTATCAGTTGGTGGGCAGAGGTCGAACAACGGAACGTTTAGACCCGATTACGTTAGTCATCTACAGAAAATGATCGCTGAGAGGATGTCGGGTCATTACATAACGGCTTCGACCATAGATTGTCGAATAAAGACTATGAAAAGAGCGTTCCAAGCCATATCTGAAATGAAGGACCCATCGTGTAGTGGGTTCGGTTGGAACGATGAGCTCAAATGCATTATTGTCGAGAAAAACTTGTACGACCATTGGGTGAAGGTATGTTCTTGATTCTATCCATTACTGTTTGTTTCTAATAGTAAATTGCTGATTAGTTCCTGCAACACTTTTACAGAGTCATTCAGCCGCGAATGGCCTCCTAAACAAATCCTTTCCCCATTACGACGACCTTTGCTACGTCTTTGGAAGAGATCGTGCAACAGGAGGTCGCGCTGAAACCTTTGTCGATGTTGGGTCGAACGTGCCTGGAGGGTACGATGGATTTCCCACTTATGACGGGAACGATATGAAGTTCCCCACGATGTACAGTTAGGTACTGGATATGTCACCTGATGACATGATGACATAATGGGCACACGACCTGGTCGGTTGTCTGAGGGTAGGACGGGTTCGAGCGGTTCAAAGAGGAAATGACAAGGACAGGCGTTCGAGGCGACAGAAATTATTCGCAATGCCATGGAATATGCGAACGACCAGCTGAAGGCCATTGCAGAATGGCCCAAAGAACAACGCTAAGATGCAAGCGTGACACATGTGGAAGTCGTTAAACAACTGCAGGGAATCCCGGAGCTGAGTAGACTGGACAGGGTTCGTTGTATGCGTATAGTGATGCGCAATGTGGATGACATGAAAGCATTTCTAGAAGTCCTGGACGAGCTTAAATTGGATTACTGCACGGTCATTCTCTAAGATACCGCTTGACTGCTTCCTCACTTTATTCATATGGGTTGTTTTTGTTGCTTTTTATCATTTCCTTGAGGACATTTGCTCGACTTCACTTCGTATTGTAATTCTATTATTGTACGCTTTTTTCCCACTTTCATAATGAACTTCTGTTTGACTCA

mRNA sequence

ATGGACAGACGATGCTTCGCCATTTTATGCCATCTACTAAGGACTACTGCTGGTTTACAGTCTACCGAAATTATCGATGTCGAAGAAATAGTGGCCATGCTCCTTCACGTACTTGTGCACGATGTGAAAAATCGTGTCATTCAACGTGACTTCCTACGGTCCGGTGACACGATTTCACGACATTTCAACCTGGTACTGCTGGCTGTTTTACGCCTTTTTGACGAGCTGTTGGCGAAACCACAACCGGTGACGAACGGTTGCACAGATGCACAATGGAGTATGACAACTTCTTCAAGGGCCCCAAAGCACCACTGGACGAAAGAGGAGGATGCCACCCTCGTTGAATGTTTGGTAGAATTGGTATCAGTTGGTGGGCAGAGGTCGAACAACGGAACGTTTAGACCCGATTACGTTAGTCATCTACAGAAAATGATCGCTGAGAGGATGTCGGGTCATTACATAACGGCTTCGACCATAGATTGTCGAATAAAGACTATGAAAAGAGCGTTCCAAGCCATATCTGAAATGAAGGACCCATCGTGTAGTGGGTTCGGTTGGAACGATGAGCTCAAATGCATTATTGTCGAGAAAAACTTGTACGACCATTGGGTGAAGAGTCATTCAGCCGCGAATGGCCTCCTAAACAAATCCTTTCCCCATTACGACGACCTTTGCTACGTCTTTGGAAGAGATCGTGCAACAGGAGGTCGCGCTGAAACCTTTGTCGATGTTGGGTCGAACGTGCCTGGAGGGTACGATGGATTTCCCACTTATGACGGGAACGATATGAAGTTCCCCACGATGTACAGTTAGGTACTGGATATGTCACCTGATGACATGATGACATAATGGGCACACGACCTGGTCGGTTGTCTGAGGGTAGGACGGGTTCGAGCGGTTCAAAGAGGAAATGACAAGGACAGGCGTTCGAGGCGACAGAAATTATTCGCAATGCCATGGAATATGCGAACGACCAGCTGAAGGCCATTGCAGAATGGCCCAAAGAACAACGCTAAGATGCAAGCGTGACACATGTGGAAGTCGTTAAACAACTGCAGGGAATCCCGGAGCTGAGTAGACTGGACAGGGTTCGTTGTATGCGTATAGTGATGCGCAATGTGGATGACATGAAAGCATTTCTAGAAGTCCTGGACGAGCTTAAATTGGATTACTGCACGGTCATTCTCTAAGATACCGCTTGACTGCTTCCTCACTTTATTCATATGGGTTGTTTTTGTTGCTTTTTATCATTTCCTTGAGGACATTTGCTCGACTTCACTTCGTATTGTAATTCTATTATTGTACGCTTTTTTCCCACTTTCATAATGAACTTCTGTTTGACTCA

Coding sequence (CDS)

ATGGACAGACGATGCTTCGCCATTTTATGCCATCTACTAAGGACTACTGCTGGTTTACAGTCTACCGAAATTATCGATGTCGAAGAAATAGTGGCCATGCTCCTTCACGTACTTGTGCACGATGTGAAAAATCGTGTCATTCAACGTGACTTCCTACGGTCCGGTGACACGATTTCACGACATTTCAACCTGGTACTGCTGGCTGTTTTACGCCTTTTTGACGAGCTGTTGGCGAAACCACAACCGGTGACGAACGGTTGCACAGATGCACAATGGAGTATGACAACTTCTTCAAGGGCCCCAAAGCACCACTGGACGAAAGAGGAGGATGCCACCCTCGTTGAATGTTTGGTAGAATTGGTATCAGTTGGTGGGCAGAGGTCGAACAACGGAACGTTTAGACCCGATTACGTTAGTCATCTACAGAAAATGATCGCTGAGAGGATGTCGGGTCATTACATAACGGCTTCGACCATAGATTGTCGAATAAAGACTATGAAAAGAGCGTTCCAAGCCATATCTGAAATGAAGGACCCATCGTGTAGTGGGTTCGGTTGGAACGATGAGCTCAAATGCATTATTGTCGAGAAAAACTTGTACGACCATTGGGTGAAGAGTCATTCAGCCGCGAATGGCCTCCTAAACAAATCCTTTCCCCATTACGACGACCTTTGCTACGTCTTTGGAAGAGATCGTGCAACAGGAGGTCGCGCTGAAACCTTTGTCGATGTTGGGTCGAACGTGCCTGGAGGGTACGATGGATTTCCCACTTATGACGGGAACGATATGAAGTTCCCCACGATGTACAGTTAG

Protein sequence

MDRRCFAILCHLLRTTAGLQSTEIIDVEEIVAMLLHVLVHDVKNRVIQRDFLRSGDTISRHFNLVLLAVLRLFDELLAKPQPVTNGCTDAQWSMTTSSRAPKHHWTKEEDATLVECLVELVSVGGQRSNNGTFRPDYVSHLQKMIAERMSGHYITASTIDCRIKTMKRAFQAISEMKDPSCSGFGWNDELKCIIVEKNLYDHWVKSHSAANGLLNKSFPHYDDLCYVFGRDRATGGRAETFVDVGSNVPGGYDGFPTYDGNDMKFPTMYS

Homology

[Close]

BLAST of PI0023441 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.5e-78
Identity = 184/457 (40.26%), Postives = 215/457 (47.05%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTAGLQSTEIIDVEEIVAMLLHVLVHDVKNRVIQRDFLRSGDTISR 60
           MDRRCFAILCHLLRT AGL STE++DVEE+VAM LH+L HDVKNRVIQR+F+RSG+TISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNLVLLAVLRLFDELLAKPQPVTNGCTDAQW---------------------------- 120
           HFN+VLLAV+RL DELL KPQPV N CTD +W                            
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 187 TRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 247 YPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 306

Query: 241 ---------------------------------------SMTTSSRAPKHHWTKEEDATL 271
                                                  SMT+SSR PKH WTKEE+A  
Sbjct: 307 RGKSYHPVEVQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEEAG- 366

[Close]

BLAST of PI0023441 vs. ExPASy TrEMBL
Match: E5GBB2 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 4.8e-69
Identity = 175/482 (36.31%), Postives = 216/482 (44.81%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTAGLQSTEIIDVEEIVAMLLHVLVHDVKNRVIQRDFLRSGDTISR 60
           MDRR FAILCHLLR  AGL STEI+DVEE+VAM LHVL HDVKNRVIQ++F+RSG+T+SR
Sbjct: 15  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQQEFVRSGETVSR 74

Query: 61  HFNLVLLAVLRLFDELLAKPQPVTNGCTDAQW---------------------------- 120
           HFN+VLLAVLRL++EL+ +P PVT+ C D +W                            
Sbjct: 75  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFR 134

Query: 121 -----------------------------------------SMTTSSRAPKHHW------ 180
                                                    S     + PK ++      
Sbjct: 135 TRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGYYYLCDAG 194

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 195 YPNAEGFLAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWTIL 254

Query: 241 ------------------------------------------------TKEEDATLVE-- 271
                                                           T  ED   +E  
Sbjct: 255 RGKSYYPLQVQCRTILACTLLHNLINREMTYCNDVEDEDEGDSTYATTTASEDIQYIETT 314

[Close]

BLAST of PI0023441 vs. ExPASy TrEMBL
Match: A0A5D3C620 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003010 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 6.2e-69
Identity = 141/273 (51.65%), Postives = 178/273 (65.20%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTAGLQSTEIIDVEEIVAMLLHVLVHDVKNRVIQRDFLRSGDTISR 60
           MDRR FAILCHLL+T +GL STEI+DVEE+VAM LHVL HD+KN VIQR+F+RS +T+SR
Sbjct: 40  MDRRTFAILCHLLQTVSGLSSTEIVDVEEMVAMFLHVLAHDMKNSVIQREFVRSDETVSR 99

Query: 61  HFNLVLLAVLRLFDELLAKPQPVTNGCTDAQWSMTTSSRAPKHHWTKEEDATLVECLVEL 120
           HFNLVLL V+RL++EL+ +P PVTN C D +W    +            D T ++  V  
Sbjct: 100 HFNLVLLTVVRLYEELIKRPVPVTNNCKDQRWQCFENCLGAL-------DGTYIKVNVPA 159

Query: 121 VSVGGQRSNNGTFRPDYVS---HLQKMIAERMSGHYITASTIDCRIKTMKRAFQAISEMK 180
                 R+  G    +YV+   + +  + E   GH       +  +        AI+EM 
Sbjct: 160 TDRPTFRTRKGEIATNYVNLKPYPETCLDEGGGGHSCGVFN-EVGVNGGGNWIMAITEMW 219

Query: 181 DPSCSGFGWNDELKCIIVEKNLYDHWVKSHSAANGLLNKSFPHYDDLCYVFGRDRATGGR 240
            P+CSGFGWNDE KCII EK L+D+WV+SH A  GLLNK FP+YD+L YVFGRDRATG  
Sbjct: 220 GPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQF 279

Query: 241 AETFVDVGSNVPGGYDGFPTYDGNDMKFPTMYS 271
            ETFV+VGSN P GYD F   DGN+ +FP +YS
Sbjct: 280 VETFVNVGSNEPVGYDRFDMGDGNE-EFPPVYS 303

[Close]

BLAST of PI0023441 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 4.0e-68
Identity = 170/476 (35.71%), Postives = 204/476 (42.86%), Query Frame = 0


Query: 15  TTAGLQSTEIIDVEEIVAMLLHVLVHDVKNRVIQRDFLRSGDTISRHFNLVLLAVLRLFD 74
           T AGL STE++DVEE+VAM LH+L HDVK+RVI+R+F+RSG+TISRHFN+VLLAV+RL +
Sbjct: 57  TIAGLTSTEVVDVEEMVAMFLHILAHDVKSRVIKREFMRSGETISRHFNMVLLAVIRLHE 116

Query: 75  ELLAKPQPVTNGCTDAQWS----------------------------------------- 134
           ELL KPQPV N CTD +W                                          
Sbjct: 117 ELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVC 176

Query: 135 ------------------------------------------------------------ 194
                                                                       
Sbjct: 177 DTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDVGYPNAEGFLAPYRGQ 236

Query: 195 ------------------------------------------------------------ 254
                                                                       
Sbjct: 237 RYHLQEWRGPENAPSTSKEFFNMKHYSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRT 296

Query: 255 -----------------------------------------------------------M 271
                                                                      M
Sbjct: 297 ILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEIM 356

[Close]

BLAST of PI0023441 vs. ExPASy TrEMBL
Match: A0A5A7SWU2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00190 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 7.6e-67
Identity = 152/288 (52.78%), Postives = 185/288 (64.24%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTAGLQSTEIIDVEEIVAMLLHVLVHDVKNRVIQRDFLRSGDTISR 60
           MDR+ FAI CHLLR  AGL STEI+DVEE+V                  D     D ISR
Sbjct: 15  MDRQTFAIPCHLLRNVAGLSSTEIVDVEEMV------------------DSWILRDAISR 74

Query: 61  HFNLVL-----LAVLRLFDELLAKPQPVTNGCTDAQ--WSMTTSSR---------APKHH 120
              L +     LA  R     L + + V N  T+A   ++M  SS            K  
Sbjct: 75  ENGLQVPKEGFLAPYRGQRYHLQEWRGVANAPTNANEYFNMKHSSARNVIERAFGVLKGP 134

Query: 121 WTKEEDATLVECLVELVSVGGQRSNNGTFRPDYVSHLQKMIAERMSGHYITAST-IDCRI 180
           WTKEE+ TLVECL+ELVS+GG +S+NGTFRP Y++ L +M+AE++ G  + A+T IDCRI
Sbjct: 135 WTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRI 194

Query: 181 KTMKRAFQAISEMKDPSCSGFGWNDELKCIIVEKNLYDHWVKSHSAANGLLNKSFPHYDD 240
           KT+KR FQAI+EM+ P+CSGFGWNDE KCII EK L+D+WV+SH  A GLLNK FP+YD+
Sbjct: 195 KTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPVAKGLLNKPFPYYDE 254

Query: 241 LCYVFGRDRATGGRAETFVDVGSNVP-GGYDGFPTYDGNDMKFPTMYS 271
           L YVFGRDRATG  AETF D+GSN P GGYD F   DG +  FP MYS
Sbjct: 255 LTYVFGRDRATGRFAETFADMGSNEPGGGYDRFDMGDGKE-DFPPMYS 283

[Close]

BLAST of PI0023441 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 302.8 bits (774), Expect = 3.1e-78
Identity = 184/457 (40.26%), Postives = 215/457 (47.05%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTAGLQSTEIIDVEEIVAMLLHVLVHDVKNRVIQRDFLRSGDTISR 60
           MDRRCFAILCHLLRT AGL STE++DVEE+VAM LH+L HDVKNRVIQR+F+RSG+TISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNLVLLAVLRLFDELLAKPQPVTNGCTDAQW---------------------------- 120
           HFN+VLLAV+RL DELL KPQPV N CTD +W                            
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 187 TRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 247 YPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 306

Query: 241 ---------------------------------------SMTTSSRAPKHHWTKEEDATL 271
                                                  SMT+SSR PKH WTKEE+A  
Sbjct: 307 RGKSYHPVEVQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEEAG- 366

[Close]

BLAST of PI0023441 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 271.2 bits (692), Expect = 9.9e-69
Identity = 175/482 (36.31%), Postives = 216/482 (44.81%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTAGLQSTEIIDVEEIVAMLLHVLVHDVKNRVIQRDFLRSGDTISR 60
           MDRR FAILCHLLR  AGL STEI+DVEE+VAM LHVL HDVKNRVIQ++F+RSG+T+SR
Sbjct: 15  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQQEFVRSGETVSR 74

Query: 61  HFNLVLLAVLRLFDELLAKPQPVTNGCTDAQW---------------------------- 120
           HFN+VLLAVLRL++EL+ +P PVT+ C D +W                            
Sbjct: 75  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFR 134

Query: 121 -----------------------------------------SMTTSSRAPKHHW------ 180
                                                    S     + PK ++      
Sbjct: 135 TRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGYYYLCDAG 194

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 195 YPNAEGFLAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWTIL 254

Query: 241 ------------------------------------------------TKEEDATLVE-- 271
                                                           T  ED   +E  
Sbjct: 255 RGKSYYPLQVQCRTILACTLLHNLINREMTYCNDVEDEDEGDSTYATTTASEDIQYIETT 314

[Close]

BLAST of PI0023441 vs. NCBI nr
Match: TYK05796.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 270.8 bits (691), Expect = 1.3e-68
Identity = 141/273 (51.65%), Postives = 178/273 (65.20%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTAGLQSTEIIDVEEIVAMLLHVLVHDVKNRVIQRDFLRSGDTISR 60
           MDRR FAILCHLL+T +GL STEI+DVEE+VAM LHVL HD+KN VIQR+F+RS +T+SR
Sbjct: 40  MDRRTFAILCHLLQTVSGLSSTEIVDVEEMVAMFLHVLAHDMKNSVIQREFVRSDETVSR 99

Query: 61  HFNLVLLAVLRLFDELLAKPQPVTNGCTDAQWSMTTSSRAPKHHWTKEEDATLVECLVEL 120
           HFNLVLL V+RL++EL+ +P PVTN C D +W    +            D T ++  V  
Sbjct: 100 HFNLVLLTVVRLYEELIKRPVPVTNNCKDQRWQCFENCLGAL-------DGTYIKVNVPA 159

Query: 121 VSVGGQRSNNGTFRPDYVS---HLQKMIAERMSGHYITASTIDCRIKTMKRAFQAISEMK 180
                 R+  G    +YV+   + +  + E   GH       +  +        AI+EM 
Sbjct: 160 TDRPTFRTRKGEIATNYVNLKPYPETCLDEGGGGHSCGVFN-EVGVNGGGNWIMAITEMW 219

Query: 181 DPSCSGFGWNDELKCIIVEKNLYDHWVKSHSAANGLLNKSFPHYDDLCYVFGRDRATGGR 240
            P+CSGFGWNDE KCII EK L+D+WV+SH A  GLLNK FP+YD+L YVFGRDRATG  
Sbjct: 220 GPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQF 279

Query: 241 AETFVDVGSNVPGGYDGFPTYDGNDMKFPTMYS 271
            ETFV+VGSN P GYD F   DGN+ +FP +YS
Sbjct: 280 VETFVNVGSNEPVGYDRFDMGDGNE-EFPPVYS 303

[Close]

BLAST of PI0023441 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 268.1 bits (684), Expect = 8.3e-68
Identity = 170/476 (35.71%), Postives = 204/476 (42.86%), Query Frame = 0


Query: 15  TTAGLQSTEIIDVEEIVAMLLHVLVHDVKNRVIQRDFLRSGDTISRHFNLVLLAVLRLFD 74
           T AGL STE++DVEE+VAM LH+L HDVK+RVI+R+F+RSG+TISRHFN+VLLAV+RL +
Sbjct: 57  TIAGLTSTEVVDVEEMVAMFLHILAHDVKSRVIKREFMRSGETISRHFNMVLLAVIRLHE 116

Query: 75  ELLAKPQPVTNGCTDAQWS----------------------------------------- 134
           ELL KPQPV N CTD +W                                          
Sbjct: 117 ELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVC 176

Query: 135 ------------------------------------------------------------ 194
                                                                       
Sbjct: 177 DTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDVGYPNAEGFLAPYRGQ 236

Query: 195 ------------------------------------------------------------ 254
                                                                       
Sbjct: 237 RYHLQEWRGPENAPSTSKEFFNMKHYSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRT 296

Query: 255 -----------------------------------------------------------M 271
                                                                      M
Sbjct: 297 ILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEIM 356

[Close]

BLAST of PI0023441 vs. NCBI nr
Match: KAA0035078.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK03601.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 263.8 bits (673), Expect = 1.6e-66
Identity = 152/288 (52.78%), Postives = 185/288 (64.24%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTAGLQSTEIIDVEEIVAMLLHVLVHDVKNRVIQRDFLRSGDTISR 60
           MDR+ FAI CHLLR  AGL STEI+DVEE+V                  D     D ISR
Sbjct: 15  MDRQTFAIPCHLLRNVAGLSSTEIVDVEEMV------------------DSWILRDAISR 74

Query: 61  HFNLVL-----LAVLRLFDELLAKPQPVTNGCTDAQ--WSMTTSSR---------APKHH 120
              L +     LA  R     L + + V N  T+A   ++M  SS            K  
Sbjct: 75  ENGLQVPKEGFLAPYRGQRYHLQEWRGVANAPTNANEYFNMKHSSARNVIERAFGVLKGP 134

Query: 121 WTKEEDATLVECLVELVSVGGQRSNNGTFRPDYVSHLQKMIAERMSGHYITAST-IDCRI 180
           WTKEE+ TLVECL+ELVS+GG +S+NGTFRP Y++ L +M+AE++ G  + A+T IDCRI
Sbjct: 135 WTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRI 194

Query: 181 KTMKRAFQAISEMKDPSCSGFGWNDELKCIIVEKNLYDHWVKSHSAANGLLNKSFPHYDD 240
           KT+KR FQAI+EM+ P+CSGFGWNDE KCII EK L+D+WV+SH  A GLLNK FP+YD+
Sbjct: 195 KTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPVAKGLLNKPFPYYDE 254

Query: 241 LCYVFGRDRATGGRAETFVDVGSNVP-GGYDGFPTYDGNDMKFPTMYS 271
           L YVFGRDRATG  AETF D+GSN P GGYD F   DG +  FP MYS
Sbjct: 255 LTYVFGRDRATGRFAETFADMGSNEPGGGYDRFDMGDGKE-DFPPMYS 283

[Close]

BLAST of PI0023441 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 3.2e-09
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTAGLQSTEIIDVEEIVAMLLHVLVHDVKNRVIQRDFLRSGDTISR 60
           MD+  F  LC LL+T   L+ T  I +E  +A+ L ++ H+++ R +Q  F  SG+TISR
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  HFNLVLLAVLRLFDELLAKPQPVTNGCT 89
           HFN VL AV+ +  +     QP +N  T
Sbjct: 108 HFNNVLNAVIAISKDFF---QPNSNSDT 132

[Close]

BLAST of PI0023441 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-08
Identity = 27/125 (21.60%), Postives = 57/125 (45.60%), Query Frame = 0


Query: 105 WTKEEDATLVECLVELVSVGGQRSNNGTFRPDYVSHLQKMIAERMSGHYITASTIDCRIK 164
           W    D   ++ +++    G Q    G FR    + +  +   +   ++     +  R K
Sbjct: 186 WHPPMDRYFIDLMLDQARRGNQ--IEGVFRKQAWTEMVNLFNAKFESNF-DVDVLKNRYK 245

Query: 165 TMKRAFQAISEMKDPSCSGFGWNDELKCIIVEKNLYDHWVKSHSAANGLLNKSFPHYDDL 224
           +++R F AI  +      GF W++E + +  + N++  ++K+H  A   + +  P+Y DL
Sbjct: 246 SLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDL 305

Query: 225 CYVFG 230
           C + G
Sbjct: 306 CVLCG 305

[Close]

BLAST of PI0023441 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-08
Identity = 27/125 (21.60%), Postives = 57/125 (45.60%), Query Frame = 0


Query: 105 WTKEEDATLVECLVELVSVGGQRSNNGTFRPDYVSHLQKMIAERMSGHYITASTIDCRIK 164
           W    D   ++ +++    G Q    G FR    + +  +   +   ++     +  R K
Sbjct: 186 WHPPMDRYFIDLMLDQARRGNQ--IEGVFRKQAWTEMVNLFNAKFESNF-DVDVLKNRYK 245

Query: 165 TMKRAFQAISEMKDPSCSGFGWNDELKCIIVEKNLYDHWVKSHSAANGLLNKSFPHYDDL 224
           +++R F AI  +      GF W++E + +  + N++  ++K+H  A   + +  P+Y DL
Sbjct: 246 SLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDL 305

Query: 225 CYVFG 230
           C + G
Sbjct: 306 CVLCG 305

[Close]

BLAST of PI0023441 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 1.7e-05
Identity = 29/80 (36.25%), Postives = 41/80 (51.25%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTTAGLQSTEIIDVEEIVAMLLHVLVHDVKNRVIQRDFLRSGDTISR 60
           M   CF  LC++L+T   LQ T  I +EE VAM L +  H+   R +   F R+ +T+ R
Sbjct: 72  MSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQR 131

Query: 61  HFNLVLLAVLRLFDELLAKP 81
            F  VL A   L  + +  P
Sbjct: 132 KFREVLTATELLACDYIRTP 151

[Close]

BLAST of PI0023441 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 2.4e-04
Identity = 41/202 (20.30%), Postives = 78/202 (38.61%), Query Frame = 0


Query: 88  TDAQWSMTTSSRAPKHHWTKEEDATLVECLVELVSVGGQRSNNGTFRPDYVSHLQKMIAE 147
           ++ + S   +S   +  WT   D  L++ LVE V+ G +     TF     + +      
Sbjct: 310 SETKASQEQNSDRTRIFWTPPMDYHLIDLLVEQVNNGNRVGQ--TFITSAWNEMVTAFNA 369

Query: 148 RMSGHYITASTIDCRIKTMKRAFQAISEMKDPSCSGFGWNDELKCIIVEKNLYDHW---- 207
           +    +     +  R K ++R +  I  + +   +GF W+     +I + ++++ +    
Sbjct: 370 KFGSQH-NKDVLKNRYKHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAC 429

Query: 208 -------------------VKSHSAANGLLNKSFPHYDDLCYVFGRDRATG--------- 256
                              V++H  A     K+ P Y +LC++FG++ + G         
Sbjct: 430 HILFLFKISVICLCLQMKHVQAHPEARSYRVKTIPSYPNLCFIFGKETSDGRYTRLAQAF 489

The following BLAST results are available for this feature:

BLAST of PI0023441 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWD8	1.5e-78	40.26	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
E5GBB2	4.8e-69	36.31	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5D3C620	6.2e-69	51.65	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCB5	4.0e-68	35.71	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5A7SWU2	7.6e-67	52.78	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0023441 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034843.1	3.1e-78	40.26	retrotransposon protein [Cucumis melo var. makuwa]	[more]
ADN33754.1	9.9e-69	36.31	retrotransposon protein [Cucumis melo subsp. melo]	[more]
TYK05796.1	1.3e-68	51.65	retrotransposon protein [Cucumis melo var. makuwa]	[more]
ADN34114.1	8.3e-68	35.71	retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0035078.1	1.6e-66	52.78	retrotransposon protein [Cucumis melo var. makuwa] >TYK03601.1 retrotransposon p...	[more]

BLAST of PI0023441 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	3.2e-09	39.77	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT4G02210.1	3.6e-08	21.60	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	3.6e-08	21.60	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G43722.1	1.7e-05	36.25	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.1	2.4e-04	20.30	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 104..198 e-value: 1.3E-8 score: 35.7
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 96..244
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 96..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023441.1	PI0023441.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane