PI0023280 (gene) Melon (PI 482460) v1

Overview


Name	PI0023280
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	NAC domain-containing protein 83-like
Location	chr02: 15295269 .. 15296024 (-)
RNA-Seq Expression	PI0023280
Synteny	PI0023280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCTGAGAGGATCTACAACTCGGATGTCATGCCTGATATGACCACTCCTCAAGATACTAGTGTTGTGGACCACGTGTTCAATATGGTCATTAATCAAGATAATGTTGATACACTCGATACACCTTTAATGATCACAAAGCAAAGCACTAGTTTGGGTACTAAATATGTACCTTGCATGCTCACTGACGGCGAATGGAAAGATCATAGTCTAAATTTAGGTGATTTGAACGGCTTTAAGCAAAGAGTAATGTTATCTAAGACAATCTGCAACTTGGATCTCATGTTTGATATGACCACTAATTTGGACAGTGGTGTTGTGGCTCACACTATCGATATGACCACTAATCAAGATAATGATAATATGTTTGACAAGCCTTCAATGTTCACAAATGAAAGTGTTAGTTTTGGTATTGAATACGTACCTTATGTGAGCACCAACGATGAATGGATAGATGGTCTAAATTTAGGCGAATTCAACGACGATGACTTTCCATTTTATATTCAGAGCAGCTTCGACAAGACATCATGTATTTTCAAAGATTGATTGAATATAGTTATTCATTGTAAAGATGTTATATGGAACATATTATTAATAATGAAGTATCATTTATTTCTTTTTTTAATACAATGAATATCATTCTTTGTAGGGGTGATCAATGGTCAATCGGGGTCGGTTTTTCGACCCAACCGACCTCGACGGACCACTATGCGAGATGGAAATGGCCGGACCGACTTCGACCGTCCTTCTTAA

mRNA sequence

ATGACTTCTGAGAGGATCTACAACTCGGATGTCATGCCTGATATGACCACTCCTCAAGATACTAGTGTTGTGGACCACGTGTTCAATATGGTCATTAATCAAGATAATGTTGATACACTCGATACACCTTTAATGATCACAAAGCAAAGCACTAGTTTGGGTACTAAATATGTACCTTGCATGCTCACTGACGGCGAATGGAAAGATCATAGTCTAAATTTAGGTGATTTGAACGGCTTTAAGCAAAGAGTAATGTTATCTAAGACAATCTGCAACTTGGATCTCATGTTTGATATGACCACTAATTTGGACAGTGGTGTTGTGGCTCACACTATCGATATGACCACTAATCAAGATAATGATAATATGTTTGACAAGCCTTCAATGTTCACAAATGAAAGTGTTAGTTTTGGTATTGAATACGTACCTTATGTGAGCACCAACGATGAATGGATAGATGGTCTAAATTTAGGCGAATTCAACGACGATGACTTTCCATTTTATATTCAGAGCAGCTTCGACAAGACATCATGGGTGATCAATGGTCAATCGGGGTCGGTTTTTCGACCCAACCGACCTCGACGGACCACTATGCGAGATGGAAATGGCCGGACCGACTTCGACCGTCCTTCTTAA

Coding sequence (CDS)

ATGACTTCTGAGAGGATCTACAACTCGGATGTCATGCCTGATATGACCACTCCTCAAGATACTAGTGTTGTGGACCACGTGTTCAATATGGTCATTAATCAAGATAATGTTGATACACTCGATACACCTTTAATGATCACAAAGCAAAGCACTAGTTTGGGTACTAAATATGTACCTTGCATGCTCACTGACGGCGAATGGAAAGATCATAGTCTAAATTTAGGTGATTTGAACGGCTTTAAGCAAAGAGTAATGTTATCTAAGACAATCTGCAACTTGGATCTCATGTTTGATATGACCACTAATTTGGACAGTGGTGTTGTGGCTCACACTATCGATATGACCACTAATCAAGATAATGATAATATGTTTGACAAGCCTTCAATGTTCACAAATGAAAGTGTTAGTTTTGGTATTGAATACGTACCTTATGTGAGCACCAACGATGAATGGATAGATGGTCTAAATTTAGGCGAATTCAACGACGATGACTTTCCATTTTATATTCAGAGCAGCTTCGACAAGACATCATGGGTGATCAATGGTCAATCGGGGTCGGTTTTTCGACCCAACCGACCTCGACGGACCACTATGCGAGATGGAAATGGCCGGACCGACTTCGACCGTCCTTCTTAA

Protein sequence

MTSERIYNSDVMPDMTTPQDTSVVDHVFNMVINQDNVDTLDTPLMITKQSTSLGTKYVPCMLTDGEWKDHSLNLGDLNGFKQRVMLSKTICNLDLMFDMTTNLDSGVVAHTIDMTTNQDNDNMFDKPSMFTNESVSFGIEYVPYVSTNDEWIDGLNLGEFNDDDFPFYIQSSFDKTSWVINGQSGSVFRPNRPRRTTMRDGNGRTDFDRPS

Homology

[Close]

BLAST of PI0023280 vs. ExPASy TrEMBL
Match: A0A1S3B941 (protein SOMBRERO-like OS=Cucumis melo OX=3656 GN=LOC103487114 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 41/93 (44.09%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 84  VMLSKTICNLDLMFDMTTNLDSGVVAHTIDMTTNQDNDNMFDKPSMFTNESVSFGIEYVP 143
           V+  +TI N ++M DMTT+ D+ VV H  +MTTNQDN          TN S S G   + 
Sbjct: 205 VITRETIYNSNIMHDMTTHQDTSVVDHVTNMTTNQDN----------TNASTSLGALCLT 264

Query: 144 YVSTNDEWIDGLNLGEFNDDDFPFYIQSSFDKT 177
              TNDEW D +NL E +D DF  Y+ ++FD+T
Sbjct: 265 CTPTNDEWKDIINLDELDDIDFSSYVPNNFDET 287

[Close]

BLAST of PI0023280 vs. ExPASy TrEMBL
Match: A0A5D3BNU6 (Protein SOMBRERO-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00160 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 84  VMLSKTICNLDLMFDMTTNLDSGVVAHTIDMTTNQDNDNMFDKPSMFTNESVSFGIEYVP 143
           V+  +TI N ++M DMTT+ D+ VV H  +MTTNQ+N          TN S S G   + 
Sbjct: 205 VITRETIYNSNIMHDMTTHQDTSVVDHVTNMTTNQNN----------TNASTSLGALCLT 264

Query: 144 YVSTNDEWIDGLNLGEFNDDDFPFYIQSSFDKT 177
            + TNDEW D +NL E +D DF  Y+ ++F++T
Sbjct: 265 CMPTNDEWKDIINLDELDDIDFSSYVPNNFNET 287

[Close]

BLAST of PI0023280 vs. ExPASy TrEMBL
Match: A0A0A0KXM1 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G296900 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 4   ERIYNSDVMPDMTTPQDTSVVDHVFNMVINQDNVDTLDTPLMITKQSTSLGTK-YVPCML 63
           E IYNSD+  D+ T QD +VVDHV NM  NQDN++          ++TSLGTK YVPCM 
Sbjct: 226 ETIYNSDIRHDVNTHQDITVVDHVPNMTTNQDNIN----------ENTSLGTKEYVPCMS 285

Query: 64  TDGEWKDHSLNL 75
           TD E +D   N+
Sbjct: 286 TDNELRDEFNNV 287

[Close]

BLAST of PI0023280 vs. ExPASy TrEMBL
Match: A0A5D3CL63 (NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00650 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-07
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1   MTSERIYNSDVMPDMTTPQDTSVVDHVFNMVINQDNVDTLDTPLMITK-QSTSLGTKYVP 60
           M  E IYNS+++PD TT +D SVVDHV NM+ NQDNV    TPLM T  +S +LGT    
Sbjct: 222 MIRETIYNSNIIPDKTTCEDISVVDHVPNMIANQDNV---YTPLMATNIESNNLGTGLNL 281

Query: 61  CMLTDGEWKDHSLNLGDLN 79
             L D EW  + +NL +LN
Sbjct: 282 GNLNDDEWM-NCINLDELN 296

[Close]

BLAST of PI0023280 vs. ExPASy TrEMBL
Match: A0A5A7TC54 (NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold477G00130 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1   MTSERIYNSDVMPDMTTPQDTSVVDHVFNMVINQDNVDTLDTPLMITK-QSTSLGTKYVP 60
           M  E IYNS+++PD TT +D SVVDHV NM+ NQDNV    TPLM T  +S +LGT    
Sbjct: 222 MIRETIYNSNIIPDKTTCEDISVVDHVPNMIANQDNV---YTPLMATNIESNNLGTGLNL 281

Query: 61  CMLTDGEWKDHSLNLGDLN 79
             L D EW  + +NL +LN
Sbjct: 282 GDLNDDEWM-NCINLDELN 296

[Close]

BLAST of PI0023280 vs. NCBI nr
Match: XP_008443554.1 (PREDICTED: protein SOMBRERO-like [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-09
Identity = 41/93 (44.09%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 84  VMLSKTICNLDLMFDMTTNLDSGVVAHTIDMTTNQDNDNMFDKPSMFTNESVSFGIEYVP 143
           V+  +TI N ++M DMTT+ D+ VV H  +MTTNQDN          TN S S G   + 
Sbjct: 205 VITRETIYNSNIMHDMTTHQDTSVVDHVTNMTTNQDN----------TNASTSLGALCLT 264

Query: 144 YVSTNDEWIDGLNLGEFNDDDFPFYIQSSFDKT 177
              TNDEW D +NL E +D DF  Y+ ++FD+T
Sbjct: 265 CTPTNDEWKDIINLDELDDIDFSSYVPNNFDET 287

[Close]

BLAST of PI0023280 vs. NCBI nr
Match: KAA0053644.1 (protein SOMBRERO-like [Cucumis melo var. makuwa] >TYK00815.1 protein SOMBRERO-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-08
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 84  VMLSKTICNLDLMFDMTTNLDSGVVAHTIDMTTNQDNDNMFDKPSMFTNESVSFGIEYVP 143
           V+  +TI N ++M DMTT+ D+ VV H  +MTTNQ+N          TN S S G   + 
Sbjct: 205 VITRETIYNSNIMHDMTTHQDTSVVDHVTNMTTNQNN----------TNASTSLGALCLT 264

Query: 144 YVSTNDEWIDGLNLGEFNDDDFPFYIQSSFDKT 177
            + TNDEW D +NL E +D DF  Y+ ++F++T
Sbjct: 265 CMPTNDEWKDIINLDELDDIDFSSYVPNNFNET 287

[Close]

BLAST of PI0023280 vs. NCBI nr
Match: XP_004142192.1 (NAC domain-containing protein 83 [Cucumis sativus] >KGN54288.1 hypothetical protein Csa_017977 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-07
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 4   ERIYNSDVMPDMTTPQDTSVVDHVFNMVINQDNVDTLDTPLMITKQSTSLGTK-YVPCML 63
           E IYNSD+  D+ T QD +VVDHV NM  NQDN++          ++TSLGTK YVPCM 
Sbjct: 226 ETIYNSDIRHDVNTHQDITVVDHVPNMTTNQDNIN----------ENTSLGTKEYVPCMS 285

Query: 64  TDGEWKDHSLNL 75
           TD E +D   N+
Sbjct: 286 TDNELRDEFNNV 287

[Close]

BLAST of PI0023280 vs. NCBI nr
Match: TYK12052.1 (NAC domain-containing protein 83-like [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-07
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1   MTSERIYNSDVMPDMTTPQDTSVVDHVFNMVINQDNVDTLDTPLMITK-QSTSLGTKYVP 60
           M  E IYNS+++PD TT +D SVVDHV NM+ NQDNV    TPLM T  +S +LGT    
Sbjct: 222 MIRETIYNSNIIPDKTTCEDISVVDHVPNMIANQDNV---YTPLMATNIESNNLGTGLNL 281

Query: 61  CMLTDGEWKDHSLNLGDLN 79
             L D EW  + +NL +LN
Sbjct: 282 GNLNDDEWM-NCINLDELN 296

[Close]

BLAST of PI0023280 vs. NCBI nr
Match: XP_008465646.1 (PREDICTED: NAC domain-containing protein 83-like [Cucumis melo] >KAA0041044.1 NAC domain-containing protein 83-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 4.9e-07
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1   MTSERIYNSDVMPDMTTPQDTSVVDHVFNMVINQDNVDTLDTPLMITK-QSTSLGTKYVP 60
           M  E IYNS+++PD TT +D SVVDHV NM+ NQDNV    TPLM T  +S +LGT    
Sbjct: 222 MIRETIYNSNIIPDKTTCEDISVVDHVPNMIANQDNV---YTPLMATNIESNNLGTGLNL 281

Query: 61  CMLTDGEWKDHSLNLGDLN 79
             L D EW  + +NL +LN
Sbjct: 282 GDLNDDEWM-NCINLDELN 296

The following BLAST results are available for this feature:

BLAST of PI0023280 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B941	1.1e-09	44.09	protein SOMBRERO-like OS=Cucumis melo OX=3656 GN=LOC103487114 PE=4 SV=1	[more]
A0A5D3BNU6	1.3e-08	41.94	Protein SOMBRERO-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15...	[more]
A0A0A0KXM1	1.1e-07	51.39	NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G296900 PE=4 SV...	[more]
A0A5D3CL63	1.8e-07	51.90	NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7TC54	2.4e-07	51.90	NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of PI0023280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443554.1	2.4e-09	44.09	PREDICTED: protein SOMBRERO-like [Cucumis melo]	[more]
KAA0053644.1	2.6e-08	41.94	protein SOMBRERO-like [Cucumis melo var. makuwa] >TYK00815.1 protein SOMBRERO-li...	[more]
XP_004142192.1	2.2e-07	51.39	NAC domain-containing protein 83 [Cucumis sativus] >KGN54288.1 hypothetical prot...	[more]
TYK12052.1	3.8e-07	51.90	NAC domain-containing protein 83-like [Cucumis melo var. makuwa]	[more]
XP_008465646.1	4.9e-07	51.90	PREDICTED: NAC domain-containing protein 83-like [Cucumis melo] >KAA0041044.1 NA...	[more]

BLAST of PI0023280 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023280.1	PI0023280.1	mRNA