PI0023060 (gene) Melon (PI 482460) v1

Overview
NamePI0023060
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr03: 21760236 .. 21760607 (+)
RNA-Seq ExpressionPI0023060
SyntenyPI0023060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACATCCTCATCTTCCTTTCCCACTCCGACTAATGTCTCTCTTCCACCTATTTCTTCTATCATTGCACCCACCCCCAAGGACCATAATGAAGTTTTGCACAACTCTATTCCAGTTACTACTAATTCTAAGAATCCAAATTCTACTAATGTGTATCCTTTAGATACAGGTTCTCATGTAGTTTTGCAGGACCAAGACTATCCTTCTTCCCCTATGCCAACTATCTCATTGATGGGGAATTATGAATCTTCATCCTCTATGGTTCATTCCCCTATTGATGCTCTTCATGCTATCAATGCTCATCCTATGATGACTCGTGGTAAGTGTGACATTTTTAAATCTAAGGCATACTTAGTTGATTATACCTAA

mRNA sequence

ATGTCTACATCCTCATCTTCCTTTCCCACTCCGACTAATGTCTCTCTTCCACCTATTTCTTCTATCATTGCACCCACCCCCAAGGACCATAATGAAGTTTTGCACAACTCTATTCCAGTTACTACTAATTCTAAGAATCCAAATTCTACTAATGTGTATCCTTTAGATACAGGTTCTCATGTAGTTTTGCAGGACCAAGACTATCCTTCTTCCCCTATGCCAACTATCTCATTGATGGGGAATTATGAATCTTCATCCTCTATGGTTCATTCCCCTATTGATGCTCTTCATGCTATCAATGCTCATCCTATGATGACTCGTGGTAAGTGTGACATTTTTAAATCTAAGGCATACTTAGTTGATTATACCTAA

Coding sequence (CDS)

ATGTCTACATCCTCATCTTCCTTTCCCACTCCGACTAATGTCTCTCTTCCACCTATTTCTTCTATCATTGCACCCACCCCCAAGGACCATAATGAAGTTTTGCACAACTCTATTCCAGTTACTACTAATTCTAAGAATCCAAATTCTACTAATGTGTATCCTTTAGATACAGGTTCTCATGTAGTTTTGCAGGACCAAGACTATCCTTCTTCCCCTATGCCAACTATCTCATTGATGGGGAATTATGAATCTTCATCCTCTATGGTTCATTCCCCTATTGATGCTCTTCATGCTATCAATGCTCATCCTATGATGACTCGTGGTAAGTGTGACATTTTTAAATCTAAGGCATACTTAGTTGATTATACCTAA

Protein sequence

MSTSSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHPMMTRGKCDIFKSKAYLVDYT
Homology
BLAST of PI0023060 vs. ExPASy TrEMBL
Match: A0A5D3CTU1 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00670 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.4e-22
Identity = 67/95 (70.53%), Postives = 73/95 (76.84%), Query Frame = 0

Query: 1  MSTSSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSH 60
          M+T SSS  TPT VSLPPISSIIAPTPKDHNEVL NSI +  NSKNPNSTNVYPLDTGS+
Sbjct: 1  MNTPSSSSITPTIVSLPPISSIIAPTPKDHNEVLPNSILIPNNSKNPNSTNVYPLDTGSN 60

Query: 61 VVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDA 96
           VLQD D P       S MGNY++SSSM  S ID+
Sbjct: 61 EVLQDHDDPP------STMGNYKTSSSMASSLIDS 89

BLAST of PI0023060 vs. ExPASy TrEMBL
Match: A0A0A0KYW3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432470 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.4e-20
Identity = 63/95 (66.32%), Postives = 70/95 (73.68%), Query Frame = 0

Query: 5   SSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQ 64
           SSS P PT VS PPISSIIAPTPKD NEVLHNS+PV  NS+N  STNVYPLDT S+ +LQ
Sbjct: 6   SSSLP-PTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSNAILQ 65

Query: 65  DQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAI 100
           + D P       S MG YE+SSSM  S +DALHAI
Sbjct: 66  EYDDPP------STMGIYETSSSMAPSLVDALHAI 93

BLAST of PI0023060 vs. ExPASy TrEMBL
Match: A0A5A7VFQ6 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00150 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 0

Query: 4   SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVL 63
           S SS P   NV  PP+ SII  +  +HNE   ++  V+ N+   NST VYPL+TG+    
Sbjct: 385 SHSSIPKSKNVLSPPLHSIIPSSLMNHNEDRRHTDTVSDNTDYLNSTIVYPLETGTQESS 444

Query: 64  QDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHPMMTRGKCDIFKSKAYLVDYT 123
           +D         + S M     + S +++    L + + HPM+T+ K DIFK KA+L+DYT
Sbjct: 445 RDDGNSGGITQSPSPMEPPHQTDSGMNT---QLQSTSIHPMITQSKHDIFKPKAFLIDYT 501

BLAST of PI0023060 vs. ExPASy TrEMBL
Match: A0A5D3D5W0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001310 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.9e-07
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 0

Query: 4   SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVL 63
           S SS P   NV  PP+ SII  +  +HNE   ++  V+ N+   N T VYPL+TG+    
Sbjct: 123 SHSSIPKSKNVLSPPLHSIIPSSLMNHNEDRRHTDTVSDNTDYLNPTIVYPLETGTQESS 182

Query: 64  QDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHPMMTRGKCDIFKSKAYLVDYT 123
           +D         + S M     + S +++    L + + HPM+T+ K DIFK KA+L+DYT
Sbjct: 183 RDDGNSGGITQSPSPMEPPHQTDSGMNT---QLQSTSIHPMITQSKHDIFKPKAFLIDYT 239

BLAST of PI0023060 vs. ExPASy TrEMBL
Match: A0A5D3DJG8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001450 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.8e-05
Identity = 45/120 (37.50%), Postives = 61/120 (50.83%), Query Frame = 0

Query: 4   SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVL 63
           S S   +P+ V  PP  SI+   P +HN V H   P T N+   N+  +YPL+TG     
Sbjct: 123 SHSITSSPSTVFNPPFQSILHTPPLNHNAVRHEIEPFTDNA--DNTAIMYPLETGISAQT 182

Query: 64  QDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHPMMTRGKCDIFKSKAYLVDYT 123
           +++   S    TI L      +++   SP   L   N HPM+TR K  IFK KA L+DYT
Sbjct: 183 REES-TSEGCDTIPLQTEEPVNNA---SPASTL---NTHPMVTRSKNGIFKPKALLIDYT 233

BLAST of PI0023060 vs. NCBI nr
Match: KAA0032169.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK14414.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 9.2e-22
Identity = 67/95 (70.53%), Postives = 73/95 (76.84%), Query Frame = 0

Query: 1  MSTSSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSH 60
          M+T SSS  TPT VSLPPISSIIAPTPKDHNEVL NSI +  NSKNPNSTNVYPLDTGS+
Sbjct: 1  MNTPSSSSITPTIVSLPPISSIIAPTPKDHNEVLPNSILIPNNSKNPNSTNVYPLDTGSN 60

Query: 61 VVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDA 96
           VLQD D P       S MGNY++SSSM  S ID+
Sbjct: 61 EVLQDHDDPP------STMGNYKTSSSMASSLIDS 89

BLAST of PI0023060 vs. NCBI nr
Match: KGN54718.1 (hypothetical protein Csa_012961 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 63/95 (66.32%), Postives = 70/95 (73.68%), Query Frame = 0

Query: 5   SSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQ 64
           SSS P PT VS PPISSIIAPTPKD NEVLHNS+PV  NS+N  STNVYPLDT S+ +LQ
Sbjct: 6   SSSLP-PTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSNAILQ 65

Query: 65  DQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAI 100
           + D P       S MG YE+SSSM  S +DALHAI
Sbjct: 66  EYDDPP------STMGIYETSSSMAPSLVDALHAI 93

BLAST of PI0023060 vs. NCBI nr
Match: KAA0067212.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-07
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 0

Query: 4   SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVL 63
           S SS P   NV  PP+ SII  +  +HNE   ++  V+ N+   NST VYPL+TG+    
Sbjct: 385 SHSSIPKSKNVLSPPLHSIIPSSLMNHNEDRRHTDTVSDNTDYLNSTIVYPLETGTQESS 444

Query: 64  QDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHPMMTRGKCDIFKSKAYLVDYT 123
           +D         + S M     + S +++    L + + HPM+T+ K DIFK KA+L+DYT
Sbjct: 445 RDDGNSGGITQSPSPMEPPHQTDSGMNT---QLQSTSIHPMITQSKHDIFKPKAFLIDYT 501

BLAST of PI0023060 vs. NCBI nr
Match: TYK18915.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-06
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 0

Query: 4   SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVL 63
           S SS P   NV  PP+ SII  +  +HNE   ++  V+ N+   N T VYPL+TG+    
Sbjct: 123 SHSSIPKSKNVLSPPLHSIIPSSLMNHNEDRRHTDTVSDNTDYLNPTIVYPLETGTQESS 182

Query: 64  QDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHPMMTRGKCDIFKSKAYLVDYT 123
           +D         + S M     + S +++    L + + HPM+T+ K DIFK KA+L+DYT
Sbjct: 183 RDDGNSGGITQSPSPMEPPHQTDSGMNT---QLQSTSIHPMITQSKHDIFKPKAFLIDYT 239

BLAST of PI0023060 vs. NCBI nr
Match: KAA0045110.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK23628.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 7.8e-05
Identity = 45/120 (37.50%), Postives = 61/120 (50.83%), Query Frame = 0

Query: 4   SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVL 63
           S S   +P+ V  PP  SI+   P +HN V H   P T N+   N+  +YPL+TG     
Sbjct: 123 SHSITSSPSTVFNPPFQSILHTPPLNHNAVRHEIEPFTDNA--DNTAIMYPLETGISAQT 182

Query: 64  QDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHPMMTRGKCDIFKSKAYLVDYT 123
           +++   S    TI L      +++   SP   L   N HPM+TR K  IFK KA L+DYT
Sbjct: 183 REES-TSEGCDTIPLQTEEPVNNA---SPASTL---NTHPMVTRSKNGIFKPKALLIDYT 233

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CTU14.4e-2270.53Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0KYW35.4e-2066.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432470 PE=4 SV=1[more]
A0A5A7VFQ61.8e-0737.50Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw... [more]
A0A5D3D5W06.9e-0736.67Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3DJG83.8e-0537.50Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
KAA0032169.19.2e-2270.53putative mitochondrial protein [Cucumis melo var. makuwa] >TYK14414.1 putative m... [more]
KGN54718.11.1e-1966.32hypothetical protein Csa_012961 [Cucumis sativus][more]
KAA0067212.13.7e-0737.50retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa][more]
TYK18915.11.4e-0636.67Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0045110.17.8e-0537.50Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..52

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0023060.1PI0023060.1mRNA