PI0022889 (gene) Melon (PI 482460) v1

Overview


Name	PI0022889
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	CACTA en-spm transposon protein
Location	chr02: 18000892 .. 18002185 (+)
RNA-Seq Expression	PI0022889
Synteny	PI0022889

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTCATGAGTTGGATATATCCCCTCACATGGGATCCTCAATGGGTGACACTTCAGGCTAGTTCCATGAGTTGGGTGACACTTCAGGTGAGTTCCATGAGTTCCGTGAGTTGGTACTAATACTTTTTTTTCGTCTTAGATGACTGCTCTTCATCCACTCGTAGCACACGCAAGCACTCACAAACATTGAGTTGGAGAAGTACGTCAACAAACATGGAAAAATTTCAATCTCCATCACACTAGGGGCGGATAAGCCAATTTCTCCACATGTTGTTCGATTCAGTAACACTATTGGTGTGGTGTCAGACATTATTTACCAGTTCGGTGTTGTACGTATGCAGATGTTCTACTAGAATACATCAAGATGACTAAGGGCGATTTGTTGGTAAATTTATGAGTTTTTGGTAACCACACATATGGAAACCTAATCCATTAGTTCTTTATTTTTGTAATGATAAATTTATCAAACATCAAATGTCGACCTTGTTCGAAGAATATAGAGAAAATTTGCACAAACATTTTAAGAAATGTGACGACCTTGAGTGAGCACGTGCCAAACCGCCTACCATATTGAAAATTTGTTTAAAAGATTGGAATTTTTTGTGCAACCATTTTCTAAGTTAAGGATTTCAGGTGATTTACTTCTTTTAATATATCACTATTTTATAAGTAAATTACTTAATGTATTGTTTTTGTTGTTTTCATGTAGGAGCAATCAAAGACGTTAAGCAAAATAGAGAAAAATAACCATTCCATCATATAGTAGCAAGTCGAAGTTGTTCCTCCAGAGACAATCCAAGCGTGAACTAACGAGGTCAACCAGTGGGACGTGTGGACCTATTCAAAGAAACACACTCAAATAAGAGTGACCAGTTCGTGAATCAGGCAGTTGAGGATGCACATATAAGCAATGTGGTTTATTTTCTAATTGTTTTGAGTGCATAACTTAACTGTTTGTGTGCAGAATCAAATGGTGGAATTACTGTCTACACCTATTCCAGAAGATTCTCAACCACTATTAGGAGACGAAATATGCAAGACAGTTGTGGGTAGACGACCTGGTTATTTAAAAGATCTTGGTTGGGGCCCTAAACCCAAGGCAACGAGAAGTAGTAGTTCATCGAGCTTAGTGTGTCAAGAAATGCACGATAGGAAGGTGAGGGAACTAAAAGCCAACTTTGAGATGCCACAATCAAAGATTAAAGAACTTGAAGAAGGGCAAAGACATATGGTAGAGGAGCATGCCAGAGAAATAGAAGAACAAAGAAGAATGTTTGAGATGCATGTCTGA

mRNA sequence

ATGAGTTTCATGAGTTGGATATATCCCCTCACATGGGATCCTCAATGGGTGACACTTCAGGCTAGTTCCATGAGTTGGGTGACACTTCAGAATCAAATGGTGGAATTACTGTCTACACCTATTCCAGAAGATTCTCAACCACTATTAGGAGACGAAATATGCAAGACAGTTGTGGGTAGACGACCTGGTTATTTAAAAGATCTTGGTTGGGGCCCTAAACCCAAGGCAACGAGAAGTAGTAGTTCATCGAGCTTAGTGTGTCAAGAAATGCACGATAGGAAGGTGAGGGAACTAAAAGCCAACTTTGAGATGCCACAATCAAAGATTAAAGAACTTGAAGAAGGGCAAAGACATATGGTAGAGGAGCATGCCAGAGAAATAGAAGAACAAAGAAGAATGTTTGAGATGCATGTCTGA

Coding sequence (CDS)

ATGAGTTTCATGAGTTGGATATATCCCCTCACATGGGATCCTCAATGGGTGACACTTCAGGCTAGTTCCATGAGTTGGGTGACACTTCAGAATCAAATGGTGGAATTACTGTCTACACCTATTCCAGAAGATTCTCAACCACTATTAGGAGACGAAATATGCAAGACAGTTGTGGGTAGACGACCTGGTTATTTAAAAGATCTTGGTTGGGGCCCTAAACCCAAGGCAACGAGAAGTAGTAGTTCATCGAGCTTAGTGTGTCAAGAAATGCACGATAGGAAGGTGAGGGAACTAAAAGCCAACTTTGAGATGCCACAATCAAAGATTAAAGAACTTGAAGAAGGGCAAAGACATATGGTAGAGGAGCATGCCAGAGAAATAGAAGAACAAAGAAGAATGTTTGAGATGCATGTCTGA

Protein sequence

MSFMSWIYPLTWDPQWVTLQASSMSWVTLQNQMVELLSTPIPEDSQPLLGDEICKTVVGRRPGYLKDLGWGPKPKATRSSSSSSLVCQEMHDRKVRELKANFEMPQSKIKELEEGQRHMVEEHAREIEEQRRMFEMHV

Homology

[Close]

BLAST of PI0022889 vs. ExPASy TrEMBL
Match: A0A5D3D4P3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5066G00010 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.7e-14
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 29  LQNQMVELLSTPIPEDSQPLLGDEICKTVVGRRPGYLKDLGWGPKPKA--TRSSSSSSLV 88
           +QNQM+EL S P PEDSQPL  DEIC  V+GRRPGY K LGWGPKPKA  T S+SSSS  
Sbjct: 100 VQNQMLELQSQPTPEDSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASSSSTS 159

Query: 89  CQEMHDRKVRELKA 101
           C +  ++++ EL+A
Sbjct: 160 CSQSTEKEI-ELQA 172

[Close]

BLAST of PI0022889 vs. ExPASy TrEMBL
Match: A0A5A7SNG1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00900 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.5e-13
Identity = 50/107 (46.73%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 31  NQMVELLSTPIPEDSQPLLGDEICKTVVGRRPGYLKDLGWGPKPKA--TRSSSSSSLVCQ 90
           NQM+EL S PIPE SQPL  DEIC  V+GRRPGY K LGWGPKPKA  T S+SSSS  C 
Sbjct: 253 NQMLELKSQPIPEGSQPLFEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASSSSTSCS 312

Query: 91  EMHDRKVRELKANFEMPQSKIKELEEGQRHMVEEHAREIEEQRRMFE 136
           +   +++ EL+A       +I+  +   + +    A ++E  ++M E
Sbjct: 313 QSTQKEI-ELQAKLHEALERIEVQDRNHQAL----ASQVEAMKKMIE 354

[Close]

BLAST of PI0022889 vs. ExPASy TrEMBL
Match: A0A5A7UI15 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004310 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.5e-13
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 31   NQMVELLSTPIPEDSQPLLGDEICKTVVGRRPGYLKDLGWGPKPKA--TRSSSSSSLVCQ 90
            NQM+EL S P PE SQPL  DEIC  V+GRRPGYLK LGWGPKPKA  T S+SSSS  C 
Sbjct: 1641 NQMLELQSKPTPEGSQPLSEDEICDQVLGRRPGYLKGLGWGPKPKARRTASASSSSTSCS 1700

Query: 91   EMHDRKVRELKANFEMPQSKIKELEEGQRHMVEEHAREIEEQRRMFE 136
            +  ++++ EL+A       +I+  +   + +    A ++E  ++M E
Sbjct: 1701 QSTEKEI-ELQAKLHEALEQIEVQDRNHQAL----ASQVEAMKKMIE 1742

[Close]

BLAST of PI0022889 vs. ExPASy TrEMBL
Match: A0A5A7SNU6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold500G00040 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.2e-13
Identity = 49/107 (45.79%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 31  NQMVELLSTPIPEDSQPLLGDEICKTVVGRRPGYLKDLGWGPKPKA--TRSSSSSSLVCQ 90
           NQM+EL S P PE SQPL  DEIC  V+GRRPGY K LGWGPKPKA  T S+SSSS  C 
Sbjct: 278 NQMLELQSQPTPEGSQPLSEDEICNQVLGRRPGYSKGLGWGPKPKARRTASASSSSTSCS 337

Query: 91  EMHDRKVRELKANFEMPQSKIKELEEGQRHMVEEHAREIEEQRRMFE 136
           +  ++++ EL+A  +    +I+  +   + +    A ++E  ++M E
Sbjct: 338 QSTEKEI-ELQAKLQEALERIEVQDRNHQAL----ASQVESMKKMIE 379

[Close]

BLAST of PI0022889 vs. ExPASy TrEMBL
Match: A0A5A7UG73 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G001000 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.2e-13
Identity = 50/107 (46.73%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 31  NQMVELLSTPIPEDSQPLLGDEICKTVVGRRPGYLKDLGWGPKPKA--TRSSSSSSLVCQ 90
           NQM+EL S PIPE SQPL  DEIC  V+GRRPGY K LGWGPKPKA  T S+SSSS  C 
Sbjct: 253 NQMLELQSQPIPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKARRTESASSSSTSCS 312

Query: 91  EMHDRKVRELKANFEMPQSKIKELEEGQRHMVEEHAREIEEQRRMFE 136
           +   +++ EL+A       +I+  +   + +    A ++E  ++M E
Sbjct: 313 QSTQKEI-ELQAKLHEALERIEVQDRNHQAL----ASQVEAMKKMIE 354

[Close]

BLAST of PI0022889 vs. NCBI nr
Match: XP_031737881.1 (uncharacterized protein LOC116402552 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-25
Identity = 68/115 (59.13%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 29  LQNQMVELLSTPIPEDSQPLLGDEICKTVVGRRPGYLKDLGWGPKPKATR-SSSSSSLVC 88
           + NQM+ELL  P  E SQPL GDEIC+TV+GRRPGY KDL WGPKPK+ +  SS+S+LV 
Sbjct: 54  VHNQMLELLLVPTLEGSQPLSGDEICETVLGRRPGYSKDLDWGPKPKSRKDGSSASNLVS 113

Query: 89  QEMHDRKVRELKANFEMPQSKIKELEEGQRHMVEE-------HAREIEEQRRMFE 136
           QE+HDR+V EL+   E  QS+IKEL+EGQR M+EE       HAR+IE+ ++M E
Sbjct: 114 QEIHDREVMELRNTVETSQSRIKELKEGQRRMIEEQIKTSEMHARQIEKMKKMIE 168

[Close]

BLAST of PI0022889 vs. NCBI nr
Match: XP_038896646.1 (LOW QUALITY PROTEIN: 12-oxophytodienoate reductase 1-like [Benincasa hispida])

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-15
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 38  STPIPEDSQPLLGDEICKTVVGRRPGYLKDLGWGPKPKA----TRSSSSSSLVCQEMHDR 97
           + P PEDSQPL GDEIC+TV+GRR GY K L WG KPK+     R SSSSS    +  +R
Sbjct: 181 TNPTPEDSQPLKGDEICETVLGRRLGYSKGLSWGLKPKSIRGXIRGSSSSSSSSTQGTER 240

Query: 98  KVRELKANFEMPQSKIKELEEGQRH 119
           +VREL+ANFE  QS+IKELE+   H
Sbjct: 241 EVRELRANFEQSQSRIKELEDPNSH 265

[Close]

BLAST of PI0022889 vs. NCBI nr
Match: KAA0045389.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK18504.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-14
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 29  LQNQMVELLSTPIPEDSQPLLGDEICKTVVGRRPGYLKDLGWGPKPKA--TRSSSSSSLV 88
           +QNQM+EL S P PEDSQPL  DEIC  V+GRRPGY K LGWGPKPKA  T S+SSSS  
Sbjct: 100 VQNQMLELQSQPTPEDSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASSSSTS 159

Query: 89  CQEMHDRKVRELKA 101
           C +  ++++ EL+A
Sbjct: 160 CSQSTEKEI-ELQA 172

[Close]

BLAST of PI0022889 vs. NCBI nr
Match: KAA0054628.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 5.1e-13
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 31   NQMVELLSTPIPEDSQPLLGDEICKTVVGRRPGYLKDLGWGPKPKA--TRSSSSSSLVCQ 90
            NQM+EL S P PE SQPL  DEIC  V+GRRPGYLK LGWGPKPKA  T S+SSSS  C 
Sbjct: 1641 NQMLELQSKPTPEGSQPLSEDEICDQVLGRRPGYLKGLGWGPKPKARRTASASSSSTSCS 1700

Query: 91   EMHDRKVRELKANFEMPQSKIKELEEGQRHMVEEHAREIEEQRRMFE 136
            +  ++++ EL+A       +I+  +   + +    A ++E  ++M E
Sbjct: 1701 QSTEKEI-ELQAKLHEALEQIEVQDRNHQAL----ASQVEAMKKMIE 1742

[Close]

BLAST of PI0022889 vs. NCBI nr
Match: KAA0032168.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 5.1e-13
Identity = 50/107 (46.73%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 31  NQMVELLSTPIPEDSQPLLGDEICKTVVGRRPGYLKDLGWGPKPKA--TRSSSSSSLVCQ 90
           NQM+EL S PIPE SQPL  DEIC  V+GRRPGY K LGWGPKPKA  T S+SSSS  C 
Sbjct: 253 NQMLELKSQPIPEGSQPLFEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASSSSTSCS 312

Query: 91  EMHDRKVRELKANFEMPQSKIKELEEGQRHMVEEHAREIEEQRRMFE 136
           +   +++ EL+A       +I+  +   + +    A ++E  ++M E
Sbjct: 313 QSTQKEI-ELQAKLHEALERIEVQDRNHQAL----ASQVEAMKKMIE 354

The following BLAST results are available for this feature:

BLAST of PI0022889 vs.


Match Name	E-value	Identity	Description

BLAST of PI0022889 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4P3	1.7e-14	62.16	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7SNG1	2.5e-13	46.73	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UI15	2.5e-13	46.73	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5A7SNU6	3.2e-13	45.79	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UG73	3.2e-13	46.73	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of PI0022889 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737881.1	2.6e-25	59.13	uncharacterized protein LOC116402552 [Cucumis sativus]	[more]
XP_038896646.1	1.9e-15	58.82	LOW QUALITY PROTEIN: 12-oxophytodienoate reductase 1-like [Benincasa hispida]	[more]
KAA0045389.1	3.5e-14	62.16	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK18504.1 CACTA en-...	[more]
KAA0054628.1	5.1e-13	46.73	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0032168.1	5.1e-13	46.73	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0022889 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0022889.1	PI0022889.1	mRNA