Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATAGCGAAACAGATGGGCAAGGCCCACGCAGATCGATTGATAGAGATCGAAGAGCAGATGCTCTACCTGCTAGAAATTCTGGACACCGTCCGCTTCTTGGAAGGTCGGATTGAGGAAGTGTCCGAGAAAGCTGATGCTATTGATGCGGTGACCGGTCGCCTCGACGGATTACCTATAAAGGAGTTGTTGACAAGAGTTGACACTCTAGAGGCAAAGACTACAAGAACTAGTAACTACGAGCGTGGGGATAGTTCAACGGGCTCTGTTGCCCACATGGAGAAACGGATTGGCGAGCTAGATAGCTCCCAAAAGTTGATTGTCGAGATGATAAACGGCATGTCAGAGGATTTTCGTGTCGCTCTTGATGTCGTCAGGAATGAGATCGCAGATGTGAGTGCAAGGGTGAACCTCACGATGCGAGCCATAGCAAACCAAGCTCCAACTGAAGGAGCTATATAA
mRNA sequence
ATGTCTATAGCGAAACAGATGGGCAAGGCCCACGCAGATCGATTGATAGAGATCGAAGAGCAGATGCTCTACCTGCTAGAAATTCTGGACACCGTCCGCTTCTTGGAAGGTCGGATTGAGGAAGTGTCCGAGAAAGCTGATGCTATTGATGCGGTGACCGGTCGCCTCGACGGATTACCTATAAAGGAGTTGTTGACAAGAGTTGACACTCTAGAGGCAAAGACTACAAGAACTAGTAACTACGAGCGTGGGGATAGTTCAACGGGCTCTGTTGCCCACATGGAGAAACGGATTGGCGAGCTAGATAGCTCCCAAAAGTTGATTGTCGAGATGATAAACGGCATGTCAGAGGATTTTCGTGTCGCTCTTGATGTCGTCAGGAATGAGATCGCAGATGTGAGTGCAAGGGTGAACCTCACGATGCGAGCCATAGCAAACCAAGCTCCAACTGAAGGAGCTATATAA
Coding sequence (CDS)
ATGTCTATAGCGAAACAGATGGGCAAGGCCCACGCAGATCGATTGATAGAGATCGAAGAGCAGATGCTCTACCTGCTAGAAATTCTGGACACCGTCCGCTTCTTGGAAGGTCGGATTGAGGAAGTGTCCGAGAAAGCTGATGCTATTGATGCGGTGACCGGTCGCCTCGACGGATTACCTATAAAGGAGTTGTTGACAAGAGTTGACACTCTAGAGGCAAAGACTACAAGAACTAGTAACTACGAGCGTGGGGATAGTTCAACGGGCTCTGTTGCCCACATGGAGAAACGGATTGGCGAGCTAGATAGCTCCCAAAAGTTGATTGTCGAGATGATAAACGGCATGTCAGAGGATTTTCGTGTCGCTCTTGATGTCGTCAGGAATGAGATCGCAGATGTGAGTGCAAGGGTGAACCTCACGATGCGAGCCATAGCAAACCAAGCTCCAACTGAAGGAGCTATATAA
Protein sequence
MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTTRTSNYERGDSSTGSVAHMEKRIGELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI
Homology
BLAST of PI0022836 vs. ExPASy TrEMBL
Match:
A0A5D3DU93 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00280 PE=4 SV=1)
HSP 1 Score: 209.5 bits (532), Expect = 9.7e-51
Identity = 110/156 (70.51%), Postives = 131/156 (83.97%), Query Frame = 0
Query: 1 MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
MS+A G A DRL E+EEQMLYL E+ D++R+LE R+EE+SEKA IDAV GR++GLP
Sbjct: 1 MSLADPSGNAQRDRLAELEEQMLYLGEVPDSIRYLESRVEEISEKAGTIDAVAGRVEGLP 60
Query: 61 IKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRIGELDSSQKLIVEMINGMSED 120
I+ELL RVDTLEA T RT NYERGDSS+G VAHME+R+GELDSSQK ++++INGMSED
Sbjct: 61 IQELLARVDTLEANTNVRRTVNYERGDSSSGFVAHMEERVGELDSSQKTLLKLINGMSED 120
Query: 121 FRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI 155
F V LDVVRNEIADV+AR+NLTMRA+ANQAP GAI
Sbjct: 121 FPVTLDVVRNEIADVNARLNLTMRAMANQAPAGGAI 156
BLAST of PI0022836 vs. ExPASy TrEMBL
Match:
A0A5D3BQN3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001060 PE=4 SV=1)
HSP 1 Score: 208.4 bits (529), Expect = 2.2e-50
Identity = 107/156 (68.59%), Postives = 132/156 (84.62%), Query Frame = 0
Query: 1 MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
MS + GKA DRL+EIEEQMLYL+E+ D++R+LE R+EE+SEKAD IDAV GR++GLP
Sbjct: 1 MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVEEISEKADTIDAVAGRVEGLP 60
Query: 61 IKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRIGELDSSQKLIVEMINGMSED 120
I+ELL RVD LE T RT NYERG+SS+G AHME+R+GELD++QK ++EMINGMSED
Sbjct: 61 IQELLARVDALEENTNARRTINYERGESSSGFAAHMEERVGELDNAQKTLLEMINGMSED 120
Query: 121 FRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI 155
FRV LDVVRNEIADV+AR++LTMRA+A+QAP GAI
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMASQAPAGGAI 156
BLAST of PI0022836 vs. ExPASy TrEMBL
Match:
A0A5A7UIP7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27G00270 PE=4 SV=1)
HSP 1 Score: 208.0 bits (528), Expect = 2.8e-50
Identity = 107/156 (68.59%), Postives = 131/156 (83.97%), Query Frame = 0
Query: 1 MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
MS + GKA DRL+E+EEQMLYL+E+ D++R+LE R+EE+SEK + IDAV GR++G P
Sbjct: 1 MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60
Query: 61 IKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRIGELDSSQKLIVEMINGMSED 120
I+EL+TRVD LE RT NYERGDSSTGSVAH+E+R+ ELDSSQK ++EMINGMSED
Sbjct: 61 IQELVTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120
Query: 121 FRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI 155
FR LDVVRNEIADV+AR++LTMRA+ANQAPT GAI
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPTGGAI 156
BLAST of PI0022836 vs. ExPASy TrEMBL
Match:
A0A5D3BYE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00260 PE=4 SV=1)
HSP 1 Score: 207.6 bits (527), Expect = 3.7e-50
Identity = 106/156 (67.95%), Postives = 131/156 (83.97%), Query Frame = 0
Query: 1 MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
MS + +GKA DRL+E+EEQMLYL+E+ D++R+LE R+EE+SEK + IDAV GR++G P
Sbjct: 1 MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60
Query: 61 IKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRIGELDSSQKLIVEMINGMSED 120
I+EL+TRVD LE RT NYERGDSSTGSVAH+E+R+ ELDSSQK ++EMINGMSED
Sbjct: 61 IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120
Query: 121 FRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI 155
FR LDVVRNEIADV+AR++LTMRA+ANQAP GAI
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAI 156
BLAST of PI0022836 vs. ExPASy TrEMBL
Match:
A0A5D3CCE2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00740 PE=4 SV=1)
HSP 1 Score: 207.2 bits (526), Expect = 4.8e-50
Identity = 107/156 (68.59%), Postives = 132/156 (84.62%), Query Frame = 0
Query: 1 MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
MS + GKA DRL+EIEEQMLYL+E+ D++R+LE R++E+SEKA+ IDAV GR++GLP
Sbjct: 1 MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60
Query: 61 IKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRIGELDSSQKLIVEMINGMSED 120
IKELL RVD LE T RT NYERG+SS+G AHME+R+GELD++QK ++EMINGMSED
Sbjct: 61 IKELLARVDALEENTNARRTINYERGESSSGFGAHMEERVGELDNAQKTLLEMINGMSED 120
Query: 121 FRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI 155
FRV LDVVRNEIADV+AR++LTMRA+ANQAP GAI
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMANQAPAGGAI 156
BLAST of PI0022836 vs. NCBI nr
Match:
TYK27261.1 (uncharacterized protein E5676_scaffold244G00280 [Cucumis melo var. makuwa])
HSP 1 Score: 209.5 bits (532), Expect = 2.0e-50
Identity = 110/156 (70.51%), Postives = 131/156 (83.97%), Query Frame = 0
Query: 1 MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
MS+A G A DRL E+EEQMLYL E+ D++R+LE R+EE+SEKA IDAV GR++GLP
Sbjct: 1 MSLADPSGNAQRDRLAELEEQMLYLGEVPDSIRYLESRVEEISEKAGTIDAVAGRVEGLP 60
Query: 61 IKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRIGELDSSQKLIVEMINGMSED 120
I+ELL RVDTLEA T RT NYERGDSS+G VAHME+R+GELDSSQK ++++INGMSED
Sbjct: 61 IQELLARVDTLEANTNVRRTVNYERGDSSSGFVAHMEERVGELDSSQKTLLKLINGMSED 120
Query: 121 FRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI 155
F V LDVVRNEIADV+AR+NLTMRA+ANQAP GAI
Sbjct: 121 FPVTLDVVRNEIADVNARLNLTMRAMANQAPAGGAI 156
BLAST of PI0022836 vs. NCBI nr
Match:
KAA0037518.1 (uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa] >TYK01993.1 uncharacterized protein E5676_scaffold808G001060 [Cucumis melo var. makuwa])
HSP 1 Score: 208.4 bits (529), Expect = 4.5e-50
Identity = 107/156 (68.59%), Postives = 132/156 (84.62%), Query Frame = 0
Query: 1 MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
MS + GKA DRL+EIEEQMLYL+E+ D++R+LE R+EE+SEKAD IDAV GR++GLP
Sbjct: 1 MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVEEISEKADTIDAVAGRVEGLP 60
Query: 61 IKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRIGELDSSQKLIVEMINGMSED 120
I+ELL RVD LE T RT NYERG+SS+G AHME+R+GELD++QK ++EMINGMSED
Sbjct: 61 IQELLARVDALEENTNARRTINYERGESSSGFAAHMEERVGELDNAQKTLLEMINGMSED 120
Query: 121 FRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI 155
FRV LDVVRNEIADV+AR++LTMRA+A+QAP GAI
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMASQAPAGGAI 156
BLAST of PI0022836 vs. NCBI nr
Match:
KAA0053339.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 208.0 bits (528), Expect = 5.8e-50
Identity = 107/156 (68.59%), Postives = 131/156 (83.97%), Query Frame = 0
Query: 1 MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
MS + GKA DRL+E+EEQMLYL+E+ D++R+LE R+EE+SEK + IDAV GR++G P
Sbjct: 1 MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60
Query: 61 IKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRIGELDSSQKLIVEMINGMSED 120
I+EL+TRVD LE RT NYERGDSSTGSVAH+E+R+ ELDSSQK ++EMINGMSED
Sbjct: 61 IQELVTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120
Query: 121 FRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI 155
FR LDVVRNEIADV+AR++LTMRA+ANQAPT GAI
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPTGGAI 156
BLAST of PI0022836 vs. NCBI nr
Match:
TYK03099.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 207.6 bits (527), Expect = 7.6e-50
Identity = 106/156 (67.95%), Postives = 131/156 (83.97%), Query Frame = 0
Query: 1 MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
MS + +GKA DRL+E+EEQMLYL+E+ D++R+LE R+EE+SEK + IDAV GR++G P
Sbjct: 1 MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60
Query: 61 IKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRIGELDSSQKLIVEMINGMSED 120
I+EL+TRVD LE RT NYERGDSSTGSVAH+E+R+ ELDSSQK ++EMINGMSED
Sbjct: 61 IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120
Query: 121 FRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI 155
FR LDVVRNEIADV+AR++LTMRA+ANQAP GAI
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAI 156
BLAST of PI0022836 vs. NCBI nr
Match:
TYK04141.1 (uncharacterized protein E5676_scaffold148G00020 [Cucumis melo var. makuwa])
HSP 1 Score: 207.2 bits (526), Expect = 1.0e-49
Identity = 107/156 (68.59%), Postives = 132/156 (84.62%), Query Frame = 0
Query: 1 MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
MS + GKA DRL+EIEEQMLYL+E+ D++R+LE R++E+SEKA+ IDAV GR++GLP
Sbjct: 1 MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60
Query: 61 IKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRIGELDSSQKLIVEMINGMSED 120
IKELL RVD LE T RT NYERG+SS+G AHME+R+GELD++QK ++EMINGMSED
Sbjct: 61 IKELLARVDALEENTNARRTINYERGESSSGFGAHMEERVGELDNAQKTLLEMINGMSED 120
Query: 121 FRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI 155
FRV LDVVRNEIADV+AR++LTMRA+ANQAP GAI
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMANQAPAGGAI 156
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DU93 | 9.7e-51 | 70.51 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BQN3 | 2.2e-50 | 68.59 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7UIP7 | 2.8e-50 | 68.59 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... | [more] |
A0A5D3BYE6 | 3.7e-50 | 67.95 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... | [more] |
A0A5D3CCE2 | 4.8e-50 | 68.59 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
Match Name | E-value | Identity | Description | |
TYK27261.1 | 2.0e-50 | 70.51 | uncharacterized protein E5676_scaffold244G00280 [Cucumis melo var. makuwa] | [more] |
KAA0037518.1 | 4.5e-50 | 68.59 | uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa] >TYK... | [more] |
KAA0053339.1 | 5.8e-50 | 68.59 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
TYK03099.1 | 7.6e-50 | 67.95 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
TYK04141.1 | 1.0e-49 | 68.59 | uncharacterized protein E5676_scaffold148G00020 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |