PI0022813 (gene) Melon (PI 482460) v1

Overview


Name	PI0022813
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase III subunit RPC8
Location	chr01: 25516636 .. 25520311 (-)
RNA-Seq Expression	PI0022813
Synteny	PI0022813

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTGCTTCACCTCCCTCTCTCACTTTTCAGCCTTACAGCCGGCTCCGCCGTGTTTTTCCGTTCAGTATCGCCGCACTGCCTCCCTTGTACCCAGTGTGAACTGGATTTTTTACTTTACTGTTACCGGTGTCTCTCAAATGTATCTTTATATCTATTTCACTCTTCCTCTCTCTCTCTCTTGACCTCTCTCTCTGCCATTATTATACGCTCCTTCTCCGTCTGATTCTTTCTTTCAAAACTCATTTAATTCTTCCTCAAAATTTTAGTCTTTAGAAGATCCCCCTTTCTCTGTTTGACTTAATTGTAAGTTTCACCGCTGTTTTCATACTTGGGTGTGAACTCTCTGTTTTTGCTGAATTGATCTGCTGCTTTGTTTATACATTACTTTGTTCTCATTTGATTTAATTATGTGACTTTTTTTAAAAAGTAATTTCTTTTTTTCTTTTCTCTGTTTTTTGGTACATTTGGCTCTTTGAGTTTTCGTAATTGTAATTATTTGAGTTTAGTTCTTGTGGGGTAATTTATTTTCTGTTTTATACATTATGTAGTACGGAATTTCCCTTATCATTTATACCTTCGGTTGAAATCTGATGTTTTGCATTGGTTTCCTTTATCCAGAGCCTGAAGAATTGTGTTTTGGTTGGAACTATTAGCTTTAGAGAACATCCAGATGTTCTATCTTAGCCGAATTGAGCACACACTACGTATACCTCCAAGCTTGCTTAATCTACCTATCCTTGATGCTATTAAGGGTGAGCTGGAGAAACTATTCCTAGATAAGGTTCGTGAAATTTTTGTTTGTAAGCTTGTTGATTAACCTTCTTCAATTTTACCATGTGCCTTGGGATCAACACTTTTACAGAGATGAGCTTTGTCATGTAGGTGGTTGCAAACTTGGGGCTATGTATTTCTGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCCAGCGATGGTGCTGCAACATACAAGGTATTCTTACATTTATCTTTAAAGATTGAACCTTTACATTGAAGTTTCTTCGTTACATAGTGTCAGTGCATATGTATGATATAATTCTGGTAGATCAAAAAGGTCATGGGTTTAATAAAGAATTTAGAGTGAATGGGTTAAATCCATGGTGGTCACCTACCTCGGATGTAATATGTTACCAGTTTCATGACGTTTAAATGTTGTAGGGTTAGATGAGTTTTCCCATGAGATTAGTTGAGGTACGTGCAGTCTAATTTAGACACTTACAATATCCAAAATGTATATGCATATTTGGTATCTAACGTGTAAGGTATACTTTGATTATCAAGTACAAAAGGAAAATGCTTTTGTGCTTCAACATGTAAAGTCAAAATCACATAATCAATAAACTTTGGTCTCTTCTTTATCCATCTATCTTATGAACTATTTGTCTTTTCACTATTCTTGTCATTTGAAATCATAGGCTTTTGTCAAAACTACATCGGGAATACTTATTCATTGGAAATATGATGACCTGAGTTTTATGTGTGGATATTTTTACAGGTTGTGTTCACGTTGATTGTGTTTCGTCCATTCACAGGGGAGGTAATTATTGGAAAAGTTCAAGAATCAAATGAAAATGGTTTGCGAAGTATGTAATGTCTTTTTTTTTTAACGTTCTTAAAGAATGTATATTTCTCTGTCATGATTTTTTTTCTTTTGATTTGAATGTCTTAGTCTAACATTTTAAATCTTGTCGCATTTTTCTTCCTATTAAGTTTACATTTAAAATTAGTCCCTTTGTATAAGTCTTTTGAGGCAGTTGGTTCATTAGTGATTAGCAGGAGCTCTGGTGTTGATTTCCAAAATGAGTTGTTTTGCTGATTGATTCAATGGTCTAGATCTATATTCTCAATTCTTGGCAATGTTAGAAATGCTTGTGGTTAACTGTGCAAAGAGGAACTTGTAATTGTACCAATATATACATATTATACACGCACACAAGTATTTTGTTAGGCTTTTCATGTTGATGATTGATAACGTGCTTGGAAATTTGGTTTGGGTTTATGTCAGCTTGGAGATTTAGAATTGGGTAAATTCCTTTGAAGTCTTTAGGAGTTACCTTAAACTTCTTGTTCTTGCTTTGTGAACACAACATACAATAAATTTGGAATGGTGAATGGTGATGATGGATGCATGCTAAATTTGCAGTATCACTTGGATTTTTTGAGGATATTTATGTTCCGGTCGAGCTTATGCCCTCTGGATCTAAATTCACGCCAGATGAAAATAATGGGTAATTCCCCGAGGAACTCACAACCACTAACTAAAAATATAAGTGGTGTTTCTGTTGAACTATAATTTCTATTGTTGATATATCTGAAGTATTATTTGTGACTATTCTTTTTGCGACGATTGCAGTGGAAAATGCAGATGGGTATGGATCTATAATGAAGTACCATTCGACATATATGAATCTGATGAGGTTTGTCAATTATGATAGGCTTAAATCCAGTTTTAGTCCTCAACTTTTATACTTATTTCATTTAGGTTCTTAAACTGTGAAATGATTTGTTTTAACTTTGCAAAGACCTACTCAATTTCTTTTTGAAAACTTAGTAGTGTGAAAATCTAAATATAATAAGCACAAACATGAAGGAAAAAGTATATGATGTATATTTTTGTGCAGTGATAATGTTGTAGAACAAACGCTCCATTTTAGGAGGGAGTATCCATTTTGGACAAGCTTTAGAACGTGTCCTATGTTTATATATTTATTCGTAATTTCTGACATGTGGAACACCGCTAGGATACTTCGTAGACACAGTTGGGGTAAAATTTTTTAGAGAGAAAATGGTCCATTTTTGGACCCAAATCTAAAGCTCAAATCTCAATTATATGTTAACAAAACAGAAGGAAAGCCCATATTTTGGACCAAAGATTAAAAAAACAGTTTTAAAAAAAAATGGTATCCCCGACATATCTTGTATCCCTATTTTGAAATTAGCATCTTGTTGTGTCATTTTGTATCTGTATCTATGCTTCTTAGGTTACGTAGAGTATGAATTTTGGAGAATTTTGGAGATGGTGCATATGCTTAGTTTTGGTTTCTTGAAATGGCAGATAAAATTTAAAATACACAGCATAGAGTACCCTGCAATCCTAGTGGAGCAGCCAAAAGAGAGTAATTCAAAATTTCTAATGGAGGAGCAACCAAAGAGAGTATTAATGTAAAACCATTCGCTCCCATGGTTATTACTGTATGTCTCTCACTCTCAACTTCAACCATTTCCTTTACTTTATCTTATTGATAAATGTTTTTGTAGCATTAGTCTAAGGAAGACTGATTTGTGATAGAGTCAGTGTAAATACAAAAGCAATATTATGTTCATTCCATTACATAGCAACTATTTTGTTAATAAGCTTTTTTTTTCTTTTTTTGGTTGGTGTAGGCATCACTTGACCAAGATGGATTGGGTCCTGTTTCATGGTGGGATGGGTCGGGAGAGGCCGAGGACGAGGACGAGGTCGAAGAAGATTCCTAAGATCAGTATCTCGTTCTGTTTTTGTGACAAATTGGTATTCGCTCATTTATAACTTTGTATTATAAGTCATTTATTATTTGGTACAGGCATGATAAAGCAGAGCTTGTCACGTATGATCAAGCAATTTTTTTTTTTTAATTTATAAAAAAGAAGGGTTCCATTGTCACTTTTTA

mRNA sequence

CGTGCTTCACCTCCCTCTCTCACTTTTCAGCCTTACAGCCGGCTCCGCCGTGTTTTTCCGTTCAGTATCGCCGCACTGCCTCCCTTGTACCCAGTGTGAACTGGATTTTTTACTTTACTGTTACCGGTGTCTCTCAAATGTATCTTTATATCTATTTCACTCTTCCTCTCTCTCTCTCTTGACCTCTCTCTCTGCCATTATTATACGCTCCTTCTCCGTCTGATTCTTTCTTTCAAAACTCATTTAATTCTTCCTCAAAATTTTAGTCTTTAGAAGATCCCCCTTTCTCTGTTTGACTTAATTGTAAGTTTCACCGCTGTTTTCATACTTGGGTGTGAACTCTCTGTTTTTGCTGAATTGATCTGCTGCTTTGTTTATACATTACTTTGTTCTCATTTGATTTAATTATGTGACTTTTTTTAAAAAGTAATTTCTTTTTTTCTTTTCTCTGTTTTTTGGTACATTTGGCTCTTTGAGTTTTCGTAATTGTAATTATTTGAGTTTAGTTCTTGTGGGGTAATTTATTTTCTGTTTTATACATTATGTAGTACGGAATTTCCCTTATCATTTATACCTTCGGTTGAAATCTGATGTTTTGCATTGGTTTCCTTTATCCAGAGCCTGAAGAATTGTGTTTTGGTTGGAACTATTAGCTTTAGAGAACATCCAGATGTTCTATCTTAGCCGAATTGAGCACACACTACGTATACCTCCAAGCTTGCTTAATCTACCTATCCTTGATGCTATTAAGGGTGAGCTGGAGAAACTATTCCTAGATAAGGTGGTTGCAAACTTGGGGCTATGTATTTCTGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCCAGCGATGGTGCTGCAACATACAAGGTTGTGTTCACGTTGATTGTGTTTCGTCCATTCACAGGGGAGGTAATTATTGGAAAAGTTCAAGAATCAAATGAAAATGGTTTGCGAATATCACTTGGATTTTTTGAGGATATTTATGTTCCGGTCGAGCTTATGCCCTCTGGATCTAAATTCACGCCAGATGAAAATAATGGTGGAAAATGCAGATGGGTATGGATCTATAATGAAGTACCATTCGACATATATGAATCTGATGAGATAAAATTTAAAATACACAGCATAGAGTACCCTGCAATCCTAGTGGAGCAGCCAAAAGAGAGTAATTCAAAATTTCTAATGGAGGAGCAACCAAAGAGAGTATTAATGTAAAACCATTCGCTCCCATGGTTATTACTGCATCACTTGACCAAGATGGATTGGGTCCTGTTTCATGGTGGGATGGGTCGGGAGAGGCCGAGGACGAGGACGAGGTCGAAGAAGATTCCTAAGATCAGTATCTCGTTCTGTTTTTGTGACAAATTGGTATTCGCTCATTTATAACTTTGTATTATAAGTCATTTATTATTTGGTACAGGCATGATAAAGCAGAGCTTGTCACGTATGATCAAGCAATTTTTTTTTTTTAATTTATAAAAAAGAAGGGTTCCATTGTCACTTTTTA

Coding sequence (CDS)

ATGTTCTATCTTAGCCGAATTGAGCACACACTACGTATACCTCCAAGCTTGCTTAATCTACCTATCCTTGATGCTATTAAGGGTGAGCTGGAGAAACTATTCCTAGATAAGGTGGTTGCAAACTTGGGGCTATGTATTTCTGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCCAGCGATGGTGCTGCAACATACAAGGTTGTGTTCACGTTGATTGTGTTTCGTCCATTCACAGGGGAGGTAATTATTGGAAAAGTTCAAGAATCAAATGAAAATGGTTTGCGAATATCACTTGGATTTTTTGAGGATATTTATGTTCCGGTCGAGCTTATGCCCTCTGGATCTAAATTCACGCCAGATGAAAATAATGGTGGAAAATGCAGATGGGTATGGATCTATAATGAAGTACCATTCGACATATATGAATCTGATGAGATAAAATTTAAAATACACAGCATAGAGTACCCTGCAATCCTAGTGGAGCAGCCAAAAGAGAGTAATTCAAAATTTCTAATGGAGGAGCAACCAAAGAGAGTATTAATGTAA

Protein sequence

MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKFTPDENNGGKCRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFLMEEQPKRVLM

Homology

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BLAST of PI0022813 vs. ExPASy Swiss-Prot
Match: Q9Y535 (DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens OX=9606 GN=POLR3H PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.9e-27
Identity = 67/185 (36.22%), Postives = 102/185 (55.14%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF L  +  T+RIPP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
           P DGA+  KV F  +VF PF  E++IGK++  +  G+ +SLGFF+DI +P E +   +KF
Sbjct: 61  PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 121 TPDENNGGKCRWVWIY--NEVPFDIY--ESDEIKFKIHSIEYPAILVEQPKESNSKFLME 180
              E       WVW Y   E   D+Y    +EI+F++    +       P  +++    E
Sbjct: 121 DEAEQ-----VWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSE 180

Query: 181 EQPKR 182
           E PK+
Sbjct: 181 ELPKK 180

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BLAST of PI0022813 vs. ExPASy Swiss-Prot
Match: Q9D2C6 (DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus OX=10090 GN=Polr3h PE=1 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 5.1e-27
Identity = 67/185 (36.22%), Postives = 101/185 (54.59%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF L  +  T+RIPP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
           P DGA+  KV F  +VF PF  E++IGK++  +  G+ +SLGFF+DI +P E +   +KF
Sbjct: 61  PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 121 TPDENNGGKCRWVWIY--NEVPFDIY--ESDEIKFKIHSIEYPAILVEQPKESNSKFLME 180
              E       WVW Y   E   D+Y    +EI+F++    +       P  + +    E
Sbjct: 121 DEAEQ-----VWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSE 180

Query: 181 EQPKR 182
           E PK+
Sbjct: 181 ELPKK 180

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BLAST of PI0022813 vs. ExPASy Swiss-Prot
Match: O94285 (DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc25 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.6e-27
Identity = 65/179 (36.31%), Postives = 102/179 (56.98%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF LSR    + I PS    P  +A+  E+ K + +KV+ N+GL I VYD   +  G I 
Sbjct: 1   MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
             DG++   VVF LI+FRPF GEV++GK++  +E G+R+++ FF+DI++P +++     F
Sbjct: 61  YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVF 120

Query: 121 TPDENNGGKCRWVWIY--------NEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNS 172
            PDE       WVW           E+ FDI   +EI+F+I S ++  I  ++ K + +
Sbjct: 121 RPDER-----AWVWKIEGEDGSEGTELYFDI--DEEIRFQIESEDFVDISPKRNKNATA 172

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BLAST of PI0022813 vs. ExPASy Swiss-Prot
Match: P35718 (DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC25 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-26
Identity = 58/172 (33.72%), Postives = 104/172 (60.47%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF LS+I   +RIPP   +   + AI  +L   F +K++ N+GLCI++YD+ +V+ G + 
Sbjct: 1   MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRIS-LGFFEDIYVPVELMPSGSK 120
           P DG++   V F  +VF+PF GE++ G + +    G+++S LG F+DI++P  ++  G  
Sbjct: 61  PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120

Query: 121 FTPDENNGGKCRWVWIYNE---VPFDIYESDEIKFKIHSIEYPAILVEQPKE 169
           +TP+E+      W+W  +E   + FD+  +++I+F+I    +  +  + PKE
Sbjct: 121 YTPEES-----AWIWPMDEETKLYFDV--NEKIRFRIEREVFVDVKPKSPKE 165

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BLAST of PI0022813 vs. ExPASy Swiss-Prot
Match: Q2T9X1 (DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus OX=9913 GN=POLR3H PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-26
Identity = 65/185 (35.14%), Postives = 101/185 (54.59%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF L  +  T+RIPP      + D+I  EL K   +KV+ N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
           P DGA+  KV F  +VF PF  E++IGK++  +  G+ +SLGFF+DI +P E +   +KF
Sbjct: 61  PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 121 TPDENNGGKCRWVWIY--NEVPFDIYE--SDEIKFKIHSIEYPAILVEQPKESNSKFLME 180
              E       WVW Y   E   D+Y    +E++F++    +       P  + +    E
Sbjct: 121 DEAEQ-----VWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEAASSSE 180

Query: 181 EQPKR 182
           E PK+
Sbjct: 181 ELPKK 180

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BLAST of PI0022813 vs. ExPASy TrEMBL
Match: A0A0A0K846 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G413390 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.1e-96
Identity = 173/180 (96.11%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLR+PPSLLNLPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
           PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGS+F
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 121 TPDENNGGKCRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFLMEEQPK 180
           TPDENNGG+CRWVWIYNEVPFDIYESDEIKFK+HSIEYPAILVEQPKESNSKF MEE+PK
Sbjct: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK 180

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BLAST of PI0022813 vs. ExPASy TrEMBL
Match: A0A5A7UWI5 (DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00020 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.9e-95
Identity = 173/180 (96.11%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLR+PPSLLNLPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
           PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGS+F
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 121 TPDENNGGKCRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFLMEEQPK 180
           TPDENNGG+ RWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKF MEE+PK
Sbjct: 121 TPDENNGGRRRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFPMEEKPK 180

[Close]

BLAST of PI0022813 vs. ExPASy TrEMBL
Match: A0A1S3CEN6 (DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500005 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.9e-95
Identity = 173/180 (96.11%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLR+PPSLLNLPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
           PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGS+F
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 121 TPDENNGGKCRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFLMEEQPK 180
           TPDENNGG+ RWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKF MEE+PK
Sbjct: 121 TPDENNGGRRRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFPMEEKPK 180

[Close]

BLAST of PI0022813 vs. ExPASy TrEMBL
Match: A0A6J1DFX3 (DNA-directed RNA polymerase III subunit RPC8 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020040 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.2e-81
Identity = 148/178 (83.15%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLR+PPS+L+LPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
           PSDGAATYKVVFTLIVFRP+ GE+IIGKV+ES+ NGLRISLGFFEDIYVP+ L+P+ S+F
Sbjct: 61  PSDGAATYKVVFTLIVFRPYVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPTPSEF 120

Query: 121 TPDENNGGKCRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFLMEEQ 179
            PD  NGGK RWVW Y+  P+DIYE+DEIKF+IH+IEYPAI VEQPKESN KFL EEQ
Sbjct: 121 KPDSKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPVEQPKESNEKFLTEEQ 178

[Close]

BLAST of PI0022813 vs. ExPASy TrEMBL
Match: A0A6J1GPX5 (DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita moschata OX=3662 GN=LOC111456422 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.4e-80
Identity = 149/181 (82.32%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLR+PPS+L+LPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
           PSDGAATYKVVFTLIVFRP+ GE+IIGKV+ES+ NGLRISLGFFEDIYVP+ L+PS S+F
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 120

Query: 121 TPDENNGGKCRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILV-EQPKESNSKFLMEEQP 180
            PD  NGGK RWVW Y+  P+DIYE+DEIKF+IHSI+YPAI V +QP ESNSKF MEEQP
Sbjct: 121 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQP 180

[Close]

BLAST of PI0022813 vs. NCBI nr
Match: XP_004135978.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucumis sativus] >KGN45039.1 hypothetical protein Csa_015520 [Cucumis sativus])

HSP 1 Score: 360.9 bits (925), Expect = 6.4e-96
Identity = 173/180 (96.11%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLR+PPSLLNLPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
           PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGS+F
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 121 TPDENNGGKCRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFLMEEQPK 180
           TPDENNGG+CRWVWIYNEVPFDIYESDEIKFK+HSIEYPAILVEQPKESNSKF MEE+PK
Sbjct: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK 180

[Close]

BLAST of PI0022813 vs. NCBI nr
Match: XP_008461408.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Cucumis melo] >KAA0058536.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Cucumis melo var. makuwa] >TYJ96892.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 173/180 (96.11%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLR+PPSLLNLPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
           PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGS+F
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 121 TPDENNGGKCRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFLMEEQPK 180
           TPDENNGG+ RWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKF MEE+PK
Sbjct: 121 TPDENNGGRRRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFPMEEKPK 180

[Close]

BLAST of PI0022813 vs. NCBI nr
Match: XP_038897233.1 (DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_038897234.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_038897235.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_038897236.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 157/180 (87.22%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLR+PP+LL+LPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPNLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
           PSDGAATYKVVFTLIVFRPF GEVIIGKV+ESN  GLRISLGFFEDI VPVEL+PSGSKF
Sbjct: 61  PSDGAATYKVVFTLIVFRPFVGEVIIGKVKESNAKGLRISLGFFEDINVPVELLPSGSKF 120

Query: 121 TPDENNGGKCRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFLMEEQPK 180
            PD NNGGK RWVW Y +VP DIYE+DEI+FKIHSI+YPAI VEQPKE +SKFLMEEQP+
Sbjct: 121 EPDLNNGGKLRWVWEYQDVPCDIYETDEIRFKIHSIDYPAIPVEQPKERDSKFLMEEQPR 180

[Close]

BLAST of PI0022813 vs. NCBI nr
Match: XP_022152296.1 (DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >XP_022152304.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >XP_022152310.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >XP_022152318.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >XP_022152325.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >XP_022152332.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia])

HSP 1 Score: 311.6 bits (797), Expect = 4.5e-81
Identity = 148/178 (83.15%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLR+PPS+L+LPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
           PSDGAATYKVVFTLIVFRP+ GE+IIGKV+ES+ NGLRISLGFFEDIYVP+ L+P+ S+F
Sbjct: 61  PSDGAATYKVVFTLIVFRPYVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPTPSEF 120

Query: 121 TPDENNGGKCRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFLMEEQ 179
            PD  NGGK RWVW Y+  P+DIYE+DEIKF+IH+IEYPAI VEQPKESN KFL EEQ
Sbjct: 121 KPDSKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPVEQPKESNEKFLTEEQ 178

[Close]

BLAST of PI0022813 vs. NCBI nr
Match: XP_023547503.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo] >XP_023547504.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.5 bits (794), Expect = 1.0e-80
Identity = 150/181 (82.87%), Postives = 166/181 (91.71%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLR+PPS+L+LPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
           PSDGAATYKVVFTLIVFRP+ GE+IIGKV+ES+ NGLRISLGFFEDIYVP+ L+PS S+F
Sbjct: 61  PSDGAATYKVVFTLIVFRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEF 120

Query: 121 TPDENNGGKCRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILV-EQPKESNSKFLMEEQP 180
            PD  NGGK RWVW Y+  P+DIYE+DEIKF+IHSI+YPAI V +QP ESNSKF MEEQP
Sbjct: 121 KPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQP 180

[Close]

BLAST of PI0022813 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53
Identity = 95/171 (55.56%), Postives = 127/171 (74.27%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLS +EH+LR+PP LLNLP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
           P DGAATYKV   ++VFRPF GEVI  K +ES+ NGLR++LGFF+DIYVP  LMP  ++ 
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRC 120

Query: 121 TPDENNGGKCRWVWIYNEVPFDIYESD--EIKFKIHSIEYPAILVEQPKES 170
            PD  N  +  WVW Y E   D    D  +IKF++ SI YP++  E+ +++
Sbjct: 121 EPDPYNRKQMIWVWEYGEPKEDYIVDDACQIKFRVESISYPSVPTERAEDA 171

[Close]

BLAST of PI0022813 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53
Identity = 95/171 (55.56%), Postives = 127/171 (74.27%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLS +EH+LR+PP LLNLP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
           P DGAATYKV   ++VFRPF GEVI  K +ES+ NGLR++LGFF+DIYVP  LMP  ++ 
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRC 120

Query: 121 TPDENNGGKCRWVWIYNEVPFDIYESD--EIKFKIHSIEYPAILVEQPKES 170
            PD  N  +  WVW Y E   D    D  +IKF++ SI YP++  E+ +++
Sbjct: 121 EPDPYNRKQMIWVWEYGEPKEDYIVDDACQIKFRVESISYPSVPTERAEDA 171

[Close]

BLAST of PI0022813 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 48.9 bits (115), Expect = 5.1e-06
Identity = 36/129 (27.91%), Postives = 62/129 (48.06%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLN---LPILDAIKGELEKLFLD-KVVANLGLCISVYDIRSVDG 60
           MF   ++   + IP   ++   L +  AI  EL + F   K    LG  ++V  +  +  
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 61  GFIFPSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPS 120
           G I    G   + V+F+ + F+ F GE+I G V +  ++G+ +  G  E++Y+    MP 
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 121 GSKFTPDEN 126
             K+ P EN
Sbjct: 121 -YKYIPGEN 128

[Close]

BLAST of PI0022813 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-05
Identity = 29/120 (24.17%), Postives = 53/120 (44.17%), Query Frame = 0


Query: 1   MFYLSRIEHTLRIPPSLLNLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF+   +E  +++ P      + + +  +L K          G  +++  I ++  G I 
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSKF 120
              G  T+ V +  +VFRPF GE++   V   N+ G     G  + I+V   L+P   +F
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQ-IFVSKHLIPDDMEF 119

The following BLAST results are available for this feature:

BLAST of PI0022813 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y535	3.9e-27	36.22	DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens OX=9606 GN=POLR3H P...	[more]
Q9D2C6	5.1e-27	36.22	DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus OX=10090 GN=Polr3h ...	[more]
O94285	8.6e-27	36.31	DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strai...	[more]
P35718	1.5e-26	33.72	DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain...	[more]
Q2T9X1	1.9e-26	35.14	DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus OX=9913 GN=POLR3H PE=...	[more]

BLAST of PI0022813 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K846	3.1e-96	96.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G413390 PE=3 SV=1	[more]
A0A5A7UWI5	5.9e-95	96.11	DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo var. mak...	[more]
A0A1S3CEN6	5.9e-95	96.11	DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo OX=3656 ...	[more]
A0A6J1DFX3	2.2e-81	83.15	DNA-directed RNA polymerase III subunit RPC8 isoform X2 OS=Momordica charantia O...	[more]
A0A6J1GPX5	2.4e-80	82.32	DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of PI0022813 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135978.1	6.4e-96	96.11	DNA-directed RNA polymerase III subunit RPC8 [Cucumis sativus] >KGN45039.1 hypot...	[more]
XP_008461408.1	1.2e-94	96.11	PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Cucumis melo...	[more]
XP_038897233.1	1.1e-84	87.22	DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida] >XP_...	[more]
XP_022152296.1	4.5e-81	83.15	DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >X...	[more]
XP_023547503.1	1.0e-80	82.87	DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo] >XP_02...	[more]

BLAST of PI0022813 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06790.2	1.9e-53	55.56	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT1G06790.1	1.9e-53	55.56	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT4G14660.1	5.1e-06	27.91	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT5G59180.1	1.5e-05	24.17	DNA-directed RNA polymerase II	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 1..80 e-value: 6.2E-26 score: 92.5
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..78
None	No IPR available	GENE3D	2.40.50.140		coord: 81..182 e-value: 9.9E-21 score: 76.5
None	No IPR available	PANTHER	PTHR12709:SF9	BNAC08G44960D PROTEIN	coord: 1..168
None	No IPR available	CDD	cd04330	RNAP_III_Rpc25_N	coord: 2..80 e-value: 1.07698E-36 score: 120.391
IPR013238	RNA polymerase III, subunit Rpc25	PFAM	PF08292	RNA_pol_Rbc25	coord: 83..171 e-value: 1.9E-14 score: 54.0
IPR005576	RNA polymerase Rpb7-like , N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 8..64 e-value: 6.9E-11 score: 42.3
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..168
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 79..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0022813.3	PI0022813.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0008380	RNA splicing
biological_process	GO:0006384	transcription initiation from RNA polymerase III promoter
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0016668	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor