PI0022669 (gene) Melon (PI 482460) v1

Overview


Name	PI0022669
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	sorbitol dehydrogenase-like
Location	chr06: 6862277 .. 6863483 (+)
RNA-Seq Expression	PI0022669
Synteny	PI0022669

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCTGGACCAATTGGGCTTGTCAATATGATGGCTGCTCGTGCATTTGGTGCACCCTGGATTGTCATTTTCGATATGGATGACTATAGATTGTCTGTTGCAGAGGATCTTGGAGTAGATGAAGTTGTTAAAGTTTCAATTAACATTCAAGTTTCAATCCATTTAAAACTTTCCATTCTTTCATAACACAAACACCTTCAGTAATTTGCATTGACCTGTCCAATTTTTATGATCTGTGTAGAGAGCTTAGTGAAAATTGGGCAAAGCTCACTCGAGAAATGCCAGTGTTTTTTAATCTTACAAAGTTCTAGAATTGTCAAAATACATGGTTTTAATGTTGATTACTAGAAAAAGCCATGAAAACTAAGGTAGATGTGAGTTAACTTAGCTGGTTTAACAAGACAATTGTAACAGCCTCATGCGCCACTCAAGCTGGTGGCGAAGTTTGTATTGTTGTGGGTCACAATGAGATGACTGTTTGATAGAATCCGATATATTGAATATAAAAAAAAATAGAAATACACAATAAAACCAAGTATTTTTAGGTACTTGGACCCTCCCAATCTTGAGATACTCTTAGGTCCTAATCCATATTCCAAATATTGCTTACCTCCCCCGTCCCCTATCCTCTATTTATAACCAACTTTCCTAACAAACTTCCTATCTAATTACTAAGATACCCCTAATAATCCCATAGTTTTAGGGTTATAGGTAAGAGTTTGTTAGGGAGGTTGGTTATATATAGAAGGTAGGGGAATGAAGAAGGTAAGCAATATTTTGGAATATGGATTGGGGCTTGAGAGTATCTCAAGATTGGGAGGGTCCAAGTACCTCGAACATTTGCTTTATTGTGTATTTCTATTATCTTTTTATATTCAATATATCCGGGTTCTATCACTGTTCTATTAACTCTAGCTGTAACAAGGTACTCAGACACCTGCTATCTGCATACACAAGTTCTTTTTCCATTATACAAAGTATAATAAGCTTTATATGACAGGGAAGTCGATGTGATTGGTGTGTTTCGGTACAAAAACACATGGCCTGTGTGCTTGAAGTTTATTAGAAGTGGTAAGATCAATGTGAAGCCATTATAACACATAGATTTGGTTTCTCACAGGAGGTGGAAGATGCCTTTGACACCGGTGCTCGTGGTGGTAATGCTATTAAGGTCATGTTCAACTTGCGAACTCTCATACTTTGA

mRNA sequence

ATGGGAGCTGGACCAATTGGGCTTGTCAATATGATGGCTGCTCGTGCATTTGGTGCACCCTGGATTGTCATTTTCGATATGGATGACTATAGATTGTCTGTTGCAGAGGATCTTGGAGTAGATGAAGTTGTTAAAGAGGTGGAAGATGCCTTTGACACCGGTGCTCGTGGTGGTAATGCTATTAAGGTCATGTTCAACTTGCGAACTCTCATACTTTGA

Coding sequence (CDS)

ATGGGAGCTGGACCAATTGGGCTTGTCAATATGATGGCTGCTCGTGCATTTGGTGCACCCTGGATTGTCATTTTCGATATGGATGACTATAGATTGTCTGTTGCAGAGGATCTTGGAGTAGATGAAGTTGTTAAAGAGGTGGAAGATGCCTTTGACACCGGTGCTCGTGGTGGTAATGCTATTAAGGTCATGTTCAACTTGCGAACTCTCATACTTTGA

Protein sequence

MGAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVVKEVEDAFDTGARGGNAIKVMFNLRTLIL

Homology

[Close]

BLAST of PI0022669 vs. ExPASy Swiss-Prot
Match: Q1PSI9 (L-idonate 5-dehydrogenase OS=Vitis vinifera OX=29760 GN=VIT_16s0100g00290 PE=1 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 9.9e-11
Identity = 29/45 (64.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MGAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVVK 46
           MG+GPIGLV M+AARAFGAP IV+ D+DD RL++A+DLG D++++
Sbjct: 190 MGSGPIGLVTMLAARAFGAPRIVLVDVDDQRLAIAKDLGADDIIR 234

HSP 2 Score: 43.1 bits (100), Expect = 1.5e-03
Identity = 19/23 (82.61%), Postives = 22/23 (95.65%), Query Frame = 0


Query: 45  KEVEDAFDTGARGGNAIKVMFNL 68
           K+VE+AF+T ARGGNAIKVMFNL
Sbjct: 344 KDVEEAFETSARGGNAIKVMFNL 366

[Close]

BLAST of PI0022669 vs. ExPASy Swiss-Prot
Match: Q9FJ95 (Sorbitol dehydrogenase OS=Arabidopsis thaliana OX=3702 GN=SDH PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.9e-10
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 1   MGAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVVKEVEDAFDTGARGGNA 60
           MGAGPIGLV M+AARAF  P IVI D+D+ RL+VA+ LG DE+V+   +  D G+     
Sbjct: 188 MGAGPIGLVTMLAARAFSVPRIVIVDVDENRLAVAKQLGADEIVQVTTNLEDVGSEVEQI 247

Query: 61  IKVM 65
            K M
Sbjct: 248 QKAM 251

[Close]

BLAST of PI0022669 vs. ExPASy Swiss-Prot
Match: P07846 (Sorbitol dehydrogenase OS=Ovis aries OX=9940 GN=SORD PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.8e-05
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 2   GAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVVK 46
           GAGPIGLVN++AA+A GA  +V+ D+   RLS A+++G D +++
Sbjct: 177 GAGPIGLVNLLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILE 220

[Close]

BLAST of PI0022669 vs. ExPASy Swiss-Prot
Match: Q58D31 (Sorbitol dehydrogenase OS=Bos taurus OX=9913 GN=SORD PE=1 SV=3)

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-04
Identity = 21/44 (47.73%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 2   GAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVVK 46
           GAGPIGLV+++AA+A GA  +V+ D+   RLS A+++G D +++
Sbjct: 179 GAGPIGLVSLLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILQ 222

[Close]

BLAST of PI0022669 vs. ExPASy Swiss-Prot
Match: B6J2S1 (L-threonine 3-dehydrogenase OS=Coxiella burnetii (strain CbuG_Q212) OX=434923 GN=tdh PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.8e-04
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 2   GAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVVKEVE 49
           GAGP+GL++   AR  GA  +VI D++DYRL++AE +GV   V   +
Sbjct: 171 GAGPVGLMSAAIARHVGARHVVITDVNDYRLALAEKVGVTAAVNSTK 217

[Close]

BLAST of PI0022669 vs. ExPASy TrEMBL
Match: A0A445CZE9 (PKS_ER domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g022070 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 52/122 (42.62%), Postives = 60/122 (49.18%), Query Frame = 0


Query: 1   MGAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVV---------------- 60
           MGAGPIGLV M+AARAFGAP IVI D+DD+RLSVA+ LG D++V                
Sbjct: 187 MGAGPIGLVTMLAARAFGAPRIVIVDVDDHRLSVAKSLGADDIVKVSTNSQACIFDSLVE 246

Query: 61  ---------------------------------------KEVEDAFDTGARGGNAIKVMF 68
                                                  KEVE+AF+T A GGNAIKVMF
Sbjct: 247 VDVIGIFRYKNTWPLCLEFLRSGKIDVKPLITHRYGFSQKEVEEAFETSAAGGNAIKVMF 306

[Close]

BLAST of PI0022669 vs. ExPASy TrEMBL
Match: A0A6A4L0U5 (PKS_ER domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_16451 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.2e-12
Identity = 51/120 (42.50%), Postives = 60/120 (50.00%), Query Frame = 0


Query: 1   MGAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVV---------------- 60
           MGAGPIGLV +++ARAFGAP IVI D+DDYRLSVA++LG D +V                
Sbjct: 209 MGAGPIGLVALLSARAFGAPRIVIVDVDDYRLSVAKELGADAIVKVSTVMQVYLLQTEVD 268

Query: 61  -------------------------------------KEVEDAFDTGARGGNAIKVMFNL 68
                                                KEVE+AF+T ARGG AIKVMFNL
Sbjct: 269 VIGIFRYKNTWPLCIXFITSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFNL 328

[Close]

BLAST of PI0022669 vs. ExPASy TrEMBL
Match: A0A0A0L9M3 (ADH_zinc_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G180210 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1   MGAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVVKEVEDAFD 53
           MGAGPIGLVN+MAARAFGAP IVI D+DDYRLS+A+DLG DEVVK   D  D
Sbjct: 63  MGAGPIGLVNLMAARAFGAPRIVIVDVDDYRLSLAKDLGADEVVKVSTDIQD 114

[Close]

BLAST of PI0022669 vs. ExPASy TrEMBL
Match: A0A5A7SWR8 (Sorbitol dehydrogenase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00390 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.5e-11
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MGAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVVKEVEDAFD 53
           MGAGPIGLV +MAARAFGAP IVI D+DDYRLSVA+DLG DEVVK   D  D
Sbjct: 189 MGAGPIGLVTLMAARAFGAPRIVIVDVDDYRLSVAKDLGADEVVKVSIDTQD 240

[Close]

BLAST of PI0022669 vs. ExPASy TrEMBL
Match: A0A5D3DF08 (Sorbitol dehydrogenase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold440G00250 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.5e-11
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MGAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVVKEVEDAFD 53
           MGAGPIGLV +MAARAFGAP IVI D+DDYRLSVA+DLG DEVVK   D  D
Sbjct: 189 MGAGPIGLVTLMAARAFGAPRIVIVDVDDYRLSVAKDLGADEVVKVSIDTQD 240

[Close]

BLAST of PI0022669 vs. NCBI nr
Match: RYR56352.1 (hypothetical protein Ahy_A05g022070 isoform A [Arachis hypogaea] >RYR56353.1 hypothetical protein Ahy_A05g022070 isoform B [Arachis hypogaea] >RYR56354.1 hypothetical protein Ahy_A05g022070 isoform C [Arachis hypogaea])

HSP 1 Score: 81.3 bits (199), Expect = 3.9e-12
Identity = 52/122 (42.62%), Postives = 60/122 (49.18%), Query Frame = 0


Query: 1   MGAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVV---------------- 60
           MGAGPIGLV M+AARAFGAP IVI D+DD+RLSVA+ LG D++V                
Sbjct: 187 MGAGPIGLVTMLAARAFGAPRIVIVDVDDHRLSVAKSLGADDIVKVSTNSQACIFDSLVE 246

Query: 61  ---------------------------------------KEVEDAFDTGARGGNAIKVMF 68
                                                  KEVE+AF+T A GGNAIKVMF
Sbjct: 247 VDVIGIFRYKNTWPLCLEFLRSGKIDVKPLITHRYGFSQKEVEEAFETSAAGGNAIKVMF 306

[Close]

BLAST of PI0022669 vs. NCBI nr
Match: KAE9451670.1 (hypothetical protein C3L33_16451, partial [Rhododendron williamsianum])

HSP 1 Score: 80.5 bits (197), Expect = 6.6e-12
Identity = 51/120 (42.50%), Postives = 60/120 (50.00%), Query Frame = 0


Query: 1   MGAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVV---------------- 60
           MGAGPIGLV +++ARAFGAP IVI D+DDYRLSVA++LG D +V                
Sbjct: 209 MGAGPIGLVALLSARAFGAPRIVIVDVDDYRLSVAKELGADAIVKVSTVMQVYLLQTEVD 268

Query: 61  -------------------------------------KEVEDAFDTGARGGNAIKVMFNL 68
                                                KEVE+AF+T ARGG AIKVMFNL
Sbjct: 269 VIGIFRYKNTWPLCIXFITSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFNL 328

[Close]

BLAST of PI0022669 vs. NCBI nr
Match: XP_004140798.2 (LOW QUALITY PROTEIN: sorbitol dehydrogenase [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1   MGAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVVKEVEDAFD 53
           MGAGPIGLVN+MAARAFGAP IVI D+DDYRLS+A+DLG DEVVK   D  D
Sbjct: 189 MGAGPIGLVNLMAARAFGAPRIVIVDVDDYRLSLAKDLGADEVVKVSTDIQD 240

[Close]

BLAST of PI0022669 vs. NCBI nr
Match: KAE8650446.1 (hypothetical protein Csa_011312 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1   MGAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVVKEVEDAFD 53
           MGAGPIGLVN+MAARAFGAP IVI D+DDYRLS+A+DLG DEVVK   D  D
Sbjct: 178 MGAGPIGLVNLMAARAFGAPRIVIVDVDDYRLSLAKDLGADEVVKVSTDIQD 229

[Close]

BLAST of PI0022669 vs. NCBI nr
Match: KAG5375198.1 (hypothetical protein IGI04_039794 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 78.2 bits (191), Expect = 3.3e-11
Identity = 52/103 (50.49%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 1   MGAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLG--VDEV--------------- 60
           MGAGPIGLV M+AARAFG P IVI D+DD RLSVA+ L   VD V               
Sbjct: 188 MGAGPIGLVTMLAARAFGVPKIVIVDVDDNRLSVAKQLDREVDVVGVFRYKNTWPLCLEF 247

Query: 61  -------------------VKEVEDAFDTGARGGNAIKVMFNL 68
                               KEVEDAF+T ARG NAIKVMFNL
Sbjct: 248 LTSGKIDVKPLITHRFGFSQKEVEDAFETSARGSNAIKVMFNL 290

[Close]

BLAST of PI0022669 vs. TAIR 10
Match: AT5G51970.1 (GroES-like zinc-binding alcohol dehydrogenase family protein )

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-11
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 1   MGAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVVKEVEDAFDTGARGGNA 60
           MGAGPIGLV M+AARAF  P IVI D+D+ RL+VA+ LG DE+V+   +  D G+     
Sbjct: 188 MGAGPIGLVTMLAARAFSVPRIVIVDVDENRLAVAKQLGADEIVQVTTNLEDVGSEVEQI 247

Query: 61  IKVM 65
            K M
Sbjct: 248 QKAM 251

[Close]

BLAST of PI0022669 vs. TAIR 10
Match: AT5G51970.2 (GroES-like zinc-binding alcohol dehydrogenase family protein )

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-11
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 1   MGAGPIGLVNMMAARAFGAPWIVIFDMDDYRLSVAEDLGVDEVVKEVEDAFDTGARGGNA 60
           MGAGPIGLV M+AARAF  P IVI D+D+ RL+VA+ LG DE+V+   +  D G+     
Sbjct: 188 MGAGPIGLVTMLAARAFSVPRIVIVDVDENRLAVAKQLGADEIVQVTTNLEDVGSEVEQI 247

Query: 61  IKVM 65
            K M
Sbjct: 248 QKAM 251

The following BLAST results are available for this feature:

BLAST of PI0022669 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1PSI9	9.9e-11	64.44	L-idonate 5-dehydrogenase OS=Vitis vinifera OX=29760 GN=VIT_16s0100g00290 PE=1 S...	[more]
Q9FJ95	2.9e-10	53.13	Sorbitol dehydrogenase OS=Arabidopsis thaliana OX=3702 GN=SDH PE=1 SV=1	[more]
P07846	2.8e-05	50.00	Sorbitol dehydrogenase OS=Ovis aries OX=9940 GN=SORD PE=1 SV=1	[more]
Q58D31	1.1e-04	47.73	Sorbitol dehydrogenase OS=Bos taurus OX=9913 GN=SORD PE=1 SV=3	[more]
B6J2S1	1.8e-04	46.81	L-threonine 3-dehydrogenase OS=Coxiella burnetii (strain CbuG_Q212) OX=434923 GN...	[more]

BLAST of PI0022669 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445CZE9	1.9e-12	42.62	PKS_ER domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g022070 P...	[more]
A0A6A4L0U5	3.2e-12	42.50	PKS_ER domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262...	[more]
A0A0A0L9M3	1.2e-11	76.92	ADH_zinc_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G180210 ...	[more]
A0A5A7SWR8	3.5e-11	76.92	Sorbitol dehydrogenase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DF08	3.5e-11	76.92	Sorbitol dehydrogenase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of PI0022669 vs. NCBI nr


Match Name	E-value	Identity	Description
RYR56352.1	3.9e-12	42.62	hypothetical protein Ahy_A05g022070 isoform A [Arachis hypogaea] >RYR56353.1 hyp...	[more]
KAE9451670.1	6.6e-12	42.50	hypothetical protein C3L33_16451, partial [Rhododendron williamsianum]	[more]
XP_004140798.2	2.5e-11	76.92	LOW QUALITY PROTEIN: sorbitol dehydrogenase [Cucumis sativus]	[more]
KAE8650446.1	2.5e-11	76.92	hypothetical protein Csa_011312 [Cucumis sativus]	[more]
KAG5375198.1	3.3e-11	50.49	hypothetical protein IGI04_039794 [Brassica rapa subsp. trilocularis]	[more]

BLAST of PI0022669 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51970.1	2.0e-11	53.13	GroES-like zinc-binding alcohol dehydrogenase family protein	[more]
AT5G51970.2	2.0e-11	53.13	GroES-like zinc-binding alcohol dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.720		coord: 1..65 e-value: 8.6E-14 score: 53.8
None	No IPR available	PANTHER	PTHR43161:SF17	L-IDONATE 5-DEHYDROGENASE	coord: 45..67
None	No IPR available	PANTHER	PTHR43161	SORBITOL DEHYDROGENASE	coord: 45..67
None	No IPR available	PANTHER	PTHR43161:SF17	L-IDONATE 5-DEHYDROGENASE	coord: 1..45
None	No IPR available	PANTHER	PTHR43161	SORBITOL DEHYDROGENASE	coord: 1..45
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0022669.1	PI0022669.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0008270	zinc ion binding