Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGACAACAAGAGGATAGCGGAAGTACCTTCTGACATGAAGCATAGGATTAGACAGTTCGCTTACTTTCGCATGATCCATGAAAACGACCTCGTGTGTCATCAAAGTACGCGAATGGACAGACGATGCTTCACCATTTTATGCCATCTACTCCGGGCTGTAGCTGGATTACAGTCCACCGAAATGATCGATGTTGAAGAAATGGTCGCTATGTTCCTTCACGTACTGGCGCACGACGTGAAAAATCGTGTCATTCAACGTGAGTTCAAGCGATCCGATGAGACTGTTTCACGACATTTTAACCTTGTACTGCTGTCTGTTTTACGCCTCCATGACGAGCTTTTGGTGAAACCACAACCGGTGACAAACACTTGCACAGATACACGGTGGAGGTGGTTCGAGGTACGGTTGTAATGGTCACAGTCTGACCATCAATACCGCGTATTTGAACGAAATCTCATAGCAGATTGTGTACGCATTGCAGAATTGTCTTGGTGCACTGGATGACACATACATCAAAGTTAATGTGATGGCAACTAATCGACCAGGATACAGAACACGAAAGGGTGAAGTTGCAACAAACGTGCTTGGTGTATGTGATACGAAAGGAGATTTTGTTTCCGTGTTAGCCGGTTGGGAAAGTTCTGCGGCGGACTCGCGCATCCTTCGGGATGCCATTTCTAGACCGAACAGACTCGCGCATCCTTCGGGATGCCATTTCTAGACCGAACAGACTCGCGCATCCTTCGAGATGCCATTTCTAGAAATGACAAACACTAACATACCAGATGACGTTGATGAGGGTGACTCTACGTACGCCACCATTGGTGGTGAAGAAATTCATTACATAGAGACCTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGCCAAAAAAAGGTTCAGTGATTGGGAGTTGCGTAATCAGTAACACCCAATTAAATATACATATTTTGTGTATTGTGTATTGTGAATTGCATGTTTTGTGTAGTTCAGTACAATGGCAATTAAATATATGTGTTAACACAACAATTGTTGACGTAATTCATAATTCGCACCTGCTTTTGTTTGTTACATTAATTTATTCTTATTTTTTTTCCTAGTATGGCAACTTCTTCAAGGGCTCCAAAGAACCACTGGACGAAAGAGGAAGATGCCGTCCTCATTGAATGTCTAGTGGAATTGGTATTATTCGGCGGGTGGAGGTCGAACAACGGGACGTTTAGACCCAAGTACCATAGTTATCTACAGAAAATGATGGCCGAGAGGATGCCGAGACATAACATAACGGCTACGACAATAGATTGTCGAATCAAGATTATGAAAAGAGCATTCCAAGAGATATCTGAAATGAGAGGCCCATCGTGCAGTGGGTTTAGTTGGAACAATGAGCTCAAATGCATCATTGCCGAGAAAGACTTGTATGACAGTTGGGTGAAGGTATGTTCTTGATTCTATCCATTACTGTTCCTTTTCTAATAGTAAATTGACTAATTAGTTCCTAGGACTATCCTAAACATTGTGTTTATAGTAATATCTCCAAACCATGTCTTCATCTCCACCAAGGCTTTCTTGTCATCATTCTTCTTGTTTTTTACACATAAATCATACAACTTCTTAACAAAAGTTTTAAGCTCCAATATTCTAATGTGTTGAAGTTGCTCAAGGCGATGGTTTGTGAAGAGTTGGAGCTTAAGGATTTTCCGAACATAGCGCCAATATGAACTGTACGGACTCAACCCTATCACGGCATAGTCATAACCAAGCAACTTTGAGGCTGTAAGCTTTGGACGGGTTGCAAAGATTCTGTCATTTGTTGTAAAACACTCTATTGCTATTTCCCAATTGCTCACAATCAAGGCTCTGTTCATACCTAGCTTCAAAGTAAAGATCGGCCCGTACACATCCGCCATCTTTGCAAAGGTTATGTGAGCTGGTTCTGTTGCACTTAGCAAATGGAGGTGACCGATCAATGACCAACCATGGGTACGTTCAGGTGGGAGTTTGTTACGATTAGCTTCGACCACTCTTGTAGATATGTTGAAGAGAGCATAGAGGAAGAAGAGAAGGGTGGAGATGCCGGCCAGCACAGTGGCTGA
mRNA sequence
ATGAATGACAACAAGAGGATAGCGGAAGTACCTTCTGACATGAAGCATAGGATTAGACAGTTCGCTTACTTTCGCATGATCCATGAAAACGACCTCGTGTGTCATCAAAGTACGCGAATGGACAGACGATGCTTCACCATTTTATGCCATCTACTCCGGGCTGTAGCTGGATTACAGTCCACCGAAATGATCGATGTTGAAGAAATGGTCGCTATGTTCCTTCACGTACTGGCGCACGACGTGAAAAATCGTGTCATTCAACGTGAGTTCAAGCGATCCGATGAGACTGTTTCACGACATTTTAACCTTGTACTGCTGTCTGTTTTACGCCTCCATGACGAGCTTTTGGTGAAACCACAACCGGTGACAAACACTTGCACAGATACACGGTGGAGGTGGTTCGAGACCGAACAGACTCGCGCATCCTTCGAGATGCCATTTCTAGAAATGACAAACACTAACATACCAGATGACGTTGATGAGGGTGACTCTACGTACGCCACCATTGGTGGTGAAGAAATTCATTACATAGAGACCTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGCCAAAAAAAGTATGGCAACTTCTTCAAGGGCTCCAAAGAACCACTGGACGAAAGAGGAAGATGCCGTCCTCATTGAATGTCTAGTGGAATTGGTATTATTCGGCGGGTGGAGGTCGAACAACGGGACGTTTAGACCCAAGTACCATAGTTATCTACAGAAAATGATGGCCGAGAGGATGCCGAGACATAACATAACGGCTACGACAATAGATTGTCGAATCAAGATTATGAAAAGAGCATTCCAAGAGATATCTGAAATGAGAGGCCCATCGTGCAGTGGGTTTAGTTGGAACAATGAGCTCAAATGCATCATTGCCGAGAAAGACTTGTATGACAGTTGGGTGAAGATTCTGTCATTTGTTGTAAAACACTCTATTGCTATTTCCCAATTGCTCACAATCAAGGCTCTGTTCATACCTAGCTTCAAAGTAAAGATCGGCCCGTACACATCCGCCATCTTTGCAAAGGTTATATATGTTGAAGAGAGCATAGAGGAAGAAGAGAAGGGTGGAGATGCCGGCCAGCACAGTGGCTGA
Coding sequence (CDS)
ATGAATGACAACAAGAGGATAGCGGAAGTACCTTCTGACATGAAGCATAGGATTAGACAGTTCGCTTACTTTCGCATGATCCATGAAAACGACCTCGTGTGTCATCAAAGTACGCGAATGGACAGACGATGCTTCACCATTTTATGCCATCTACTCCGGGCTGTAGCTGGATTACAGTCCACCGAAATGATCGATGTTGAAGAAATGGTCGCTATGTTCCTTCACGTACTGGCGCACGACGTGAAAAATCGTGTCATTCAACGTGAGTTCAAGCGATCCGATGAGACTGTTTCACGACATTTTAACCTTGTACTGCTGTCTGTTTTACGCCTCCATGACGAGCTTTTGGTGAAACCACAACCGGTGACAAACACTTGCACAGATACACGGTGGAGGTGGTTCGAGACCGAACAGACTCGCGCATCCTTCGAGATGCCATTTCTAGAAATGACAAACACTAACATACCAGATGACGTTGATGAGGGTGACTCTACGTACGCCACCATTGGTGGTGAAGAAATTCATTACATAGAGACCTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGCCAAAAAAAGTATGGCAACTTCTTCAAGGGCTCCAAAGAACCACTGGACGAAAGAGGAAGATGCCGTCCTCATTGAATGTCTAGTGGAATTGGTATTATTCGGCGGGTGGAGGTCGAACAACGGGACGTTTAGACCCAAGTACCATAGTTATCTACAGAAAATGATGGCCGAGAGGATGCCGAGACATAACATAACGGCTACGACAATAGATTGTCGAATCAAGATTATGAAAAGAGCATTCCAAGAGATATCTGAAATGAGAGGCCCATCGTGCAGTGGGTTTAGTTGGAACAATGAGCTCAAATGCATCATTGCCGAGAAAGACTTGTATGACAGTTGGGTGAAGATTCTGTCATTTGTTGTAAAACACTCTATTGCTATTTCCCAATTGCTCACAATCAAGGCTCTGTTCATACCTAGCTTCAAAGTAAAGATCGGCCCGTACACATCCGCCATCTTTGCAAAGGTTATATATGTTGAAGAGAGCATAGAGGAAGAAGAGAAGGGTGGAGATGCCGGCCAGCACAGTGGCTGA
Protein sequence
MNDNKRIAEVPSDMKHRIRQFAYFRMIHENDLVCHQSTRMDRRCFTILCHLLRAVAGLQSTEMIDVEEMVAMFLHVLAHDVKNRVIQREFKRSDETVSRHFNLVLLSVLRLHDELLVKPQPVTNTCTDTRWRWFETEQTRASFEMPFLEMTNTNIPDDVDEGDSTYATIGGEEIHYIETSSAWSQWRDELAKKSMATSSRAPKNHWTKEEDAVLIECLVELVLFGGWRSNNGTFRPKYHSYLQKMMAERMPRHNITATTIDCRIKIMKRAFQEISEMRGPSCSGFSWNNELKCIIAEKDLYDSWVKILSFVVKHSIAISQLLTIKALFIPSFKVKIGPYTSAIFAKVIYVEESIEEEEKGGDAGQHSG
Homology
BLAST of PI0022090 vs. ExPASy TrEMBL
Match:
A0A5A7SYW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00430 PE=3 SV=1)
HSP 1 Score: 347.8 bits (891), Expect = 5.5e-92
Identity = 197/452 (43.58%), Postives = 247/452 (54.65%), Query Frame = 0
Query: 1 MNDNKRIAEVPSDMKHRIRQFAYFRMIHENDLVCHQSTRMDRRCFTILCHLLRAVAGLQS 60
MN+NKR+ P D +HRIR+ AYFRMIHE+DLVC QSTRMDRR F ILCHLLR VAGL S
Sbjct: 1 MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60
Query: 61 TEMIDVEEMVAMFLHVLAHDVKNRVIQREFKRSDETVSRHFNLVLLSVLRLHDELLVKPQ 120
TE++DVEEMVAMFLH+ AHDVKNRVIQREF RS ETVSRHFN+VLL+VLRL++EL+ +P
Sbjct: 61 TEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120
Query: 121 PVTNTCTDTRWRWFE---------------------TEQTR------------------- 180
PVT+ C D RW+ FE T +TR
Sbjct: 121 PVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 180
Query: 181 -------------------------------------------ASFEMPF---------- 240
F P+
Sbjct: 181 YVLAGWKGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 240
Query: 241 ------------------------------------------LEMTNTNIPDDVDEGDST 300
EMT + +D DEGDST
Sbjct: 241 RGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSEMTYCDDVEDEDEGDST 300
Query: 301 YA-TIGGEEIHYIETSSAWSQWRDELAKK-----SMATSSRAPKNHWTKEEDAVLIECLV 312
YA T E+I YIET++ WSQWRD+LA M+TS+RAP++ WT+EE+ L+ECL+
Sbjct: 301 YATTTASEDIQYIETTNEWSQWRDDLAASMFIDWHMSTSNRAPRHVWTREEEGTLVECLM 360
BLAST of PI0022090 vs. ExPASy TrEMBL
Match:
A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)
HSP 1 Score: 318.2 bits (814), Expect = 4.6e-83
Identity = 188/428 (43.93%), Postives = 227/428 (53.04%), Query Frame = 0
Query: 2 NDNKRIAEVPSDMKHRIRQFAYFRMIHENDLVCHQSTRMDRRCFTILCHLLRAVAGLQST 61
ND KRI +P + +HRIRQ AYFRMIH +DLVC QSTRMDRRCF ILCHLLR +AGL ST
Sbjct: 29 NDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTST 88
Query: 62 EMIDVEEMVAMFLHVLAHDVKNRVIQREFKRSDETVSRHFNLVLLSVLRLHDELLVKPQP 121
E++DVEEMVAMFLH+LAHDVKNRVIQREF RS ET+SRHFN+VLL+V+RLHDELL KPQP
Sbjct: 89 EVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQP 148
Query: 122 VTNTCTDTRWRWFET-----EQTRASFEMPFLEMTN---------TNIPDDVD-EGDSTY 181
V N CTD RWRWFE + T +P + TN+ D +GD Y
Sbjct: 149 VPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVYDTKGDFVY 208
Query: 182 ATIG----------------------------------------------GEEIHYIE-- 241
G G+ H E
Sbjct: 209 VLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 268
Query: 242 -------TSSAWSQWRDELAKK-------------------------------------- 301
TS + + A+
Sbjct: 269 GPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYHPVEVQCHTILACCLLH 328
Query: 302 -----------------SMATSSRAPKNHWTKEEDAVLIECLVELVLFGGWRSNNGTFRP 305
SM +SSR PK+ WTKEE+A LVELV GGWRS+NGTFRP
Sbjct: 329 NLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEEA----GLVELVNAGGWRSDNGTFRP 388
BLAST of PI0022090 vs. ExPASy TrEMBL
Match:
E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)
HSP 1 Score: 310.1 bits (793), Expect = 1.3e-80
Identity = 183/461 (39.70%), Postives = 227/461 (49.24%), Query Frame = 0
Query: 2 NDNKRIAEVPSDMKHRIRQFAYFRMIHENDLVCHQSTRMDRRCFTILCHLLRAVAGLQST 61
ND KRI +P + +HRIRQ AYFRMIH +AGL ST
Sbjct: 29 NDTKRITHIPYETRHRIRQLAYFRMIH------------------------GTIAGLTST 88
Query: 62 EMIDVEEMVAMFLHVLAHDVKNRVIQREFKRSDETVSRHFNLVLLSVLRLHDELLVKPQP 121
E++DVEEMVAMFLH+LAHDVK+RVI+REF RS ET+SRHFN+VLL+V+RLH+ELL KPQP
Sbjct: 89 EVVDVEEMVAMFLHILAHDVKSRVIKREFMRSGETISRHFNMVLLAVIRLHEELLKKPQP 148
Query: 122 VTNTCTDTRWRWFET-----EQTRASFEMP------------------------------ 181
V N CTD RWRWFE + T +P
Sbjct: 149 VPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVY 208
Query: 182 --------------------------------------------FL-------------- 241
FL
Sbjct: 209 VLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWR 268
Query: 242 ------------------------------------------------------------ 301
Sbjct: 269 GPENAPSTSKEFFNMKHYSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 328
Query: 302 -----EMTNTNIPDDVDEGDSTYATIGGEEIHYIETSSAWSQWRDELAKKSMATSSRAPK 305
EMTN +I D++DE DST+AT ++IHYIETS+ WSQWRD LA++ M +SSR PK
Sbjct: 329 NLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEIMTSSSRLPK 388
BLAST of PI0022090 vs. ExPASy TrEMBL
Match:
A0A5D3BZA2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00580 PE=4 SV=1)
HSP 1 Score: 287.7 bits (735), Expect = 6.7e-74
Identity = 167/346 (48.27%), Postives = 216/346 (62.43%), Query Frame = 0
Query: 1 MNDNKRIAEVPSDMKHRIRQFAYFRMIHENDLVCHQSTRMDRRCFTILCHLLRAVAGLQS 60
MND++RI PSD HRIRQ AYFR IHE++LVC QSTRMDR+ FTIL HLLR V+GL S
Sbjct: 1 MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 60
Query: 61 TEMIDVEEMVAMFLHVLAHDVKNRVIQREFKRSDETVSRHFNLVLLSVLRLHDELLVKPQ 120
TE++DVEEMVA FLHVLAHDVKNR+IQREF RS ETVSR+FNL+LL+V+R+++E + +
Sbjct: 61 TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 120
Query: 121 PVTNTCTDTRWRWFET-----EQTRASFEMPFLEMTN---------TNIPDDVD-EGDST 180
TN C D RW+ FE ++T +P ++ TN+ D D +GD
Sbjct: 121 SRTNNCNDQRWKCFENCFGALDETYIKVNVPAVDRPTFTTCKGEIATNVLDVCDTKGDFV 180
Query: 181 YATIGGEEIHYIETSSAWSQ-WRDELAKKSMATSSRAPKNHWTKEEDAVLIE-------- 240
Y G E S SQ RD LA+++ R P V++
Sbjct: 181 YVLAGW------EGSVVDSQILRDALAREN---GLRVPNGSLGHSSWKVVLSFYVNLNPC 240
Query: 241 ---CLVE------------LVLFGGWRSNNGTFRPKYHSYLQKMMAERMPRHNI-TATTI 300
CL E + + GGW+S+NGTFRP Y + L MMAE++P + T T I
Sbjct: 241 PEACLDEGGGRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVI 300
Query: 301 DCRIKIMKRAFQEISEMRGPSCSGFSWNNELKCIIAEKDLYDSWVK 307
DCRIKI+K+ FQ I+EMRGP+CSGF WN+E KCIIAEK+L+D+W++
Sbjct: 301 DCRIKILKQTFQVIAEMRGPACSGFGWNDEEKCIIAEKELFDNWIR 337
BLAST of PI0022090 vs. ExPASy TrEMBL
Match:
E5GBB2 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)
HSP 1 Score: 271.6 bits (693), Expect = 5.0e-69
Identity = 177/441 (40.14%), Postives = 213/441 (48.30%), Query Frame = 0
Query: 26 MIHENDLVCHQSTRMDRRCFTILCHLLRAVAGLQSTEMIDVEEMVAMFLHVLAHDVKNRV 85
MIHE+DLVC QSTRMDRR F ILCHLLR VAGL STE++DVEEMVAMFLHVLAHDVKNRV
Sbjct: 1 MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
Query: 86 IQREFKRSDETVSRHFNLVLLSVLRLHDELLVKPQPVTNTCTDTRWRWFE---------- 145
IQ+EF RS ETVSRHFN+VLL+VLRL++EL+ +P PVT+ C D RW+ FE
Sbjct: 61 IQQEFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 120
Query: 146 -----------TEQTR-------------------------------------------- 205
T +TR
Sbjct: 121 IKVNVPAGDRPTFRTRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENG 180
Query: 206 ------------------ASFEMPF----------------------------------- 265
F P+
Sbjct: 181 LQVPKGYYYLCDAGYPNAEGFLAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVI 240
Query: 266 ----------------------------------------LEMTNTNIPDDVDEGDSTYA 307
EMT N +D DEGDSTYA
Sbjct: 241 ERAFGVLKGRWTILRGKSYYPLQVQCRTILACTLLHNLINREMTYCNDVEDEDEGDSTYA 300
BLAST of PI0022090 vs. NCBI nr
Match:
KAA0036474.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 347.8 bits (891), Expect = 1.1e-91
Identity = 197/452 (43.58%), Postives = 247/452 (54.65%), Query Frame = 0
Query: 1 MNDNKRIAEVPSDMKHRIRQFAYFRMIHENDLVCHQSTRMDRRCFTILCHLLRAVAGLQS 60
MN+NKR+ P D +HRIR+ AYFRMIHE+DLVC QSTRMDRR F ILCHLLR VAGL S
Sbjct: 1 MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60
Query: 61 TEMIDVEEMVAMFLHVLAHDVKNRVIQREFKRSDETVSRHFNLVLLSVLRLHDELLVKPQ 120
TE++DVEEMVAMFLH+ AHDVKNRVIQREF RS ETVSRHFN+VLL+VLRL++EL+ +P
Sbjct: 61 TEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120
Query: 121 PVTNTCTDTRWRWFE---------------------TEQTR------------------- 180
PVT+ C D RW+ FE T +TR
Sbjct: 121 PVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 180
Query: 181 -------------------------------------------ASFEMPF---------- 240
F P+
Sbjct: 181 YVLAGWKGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 240
Query: 241 ------------------------------------------LEMTNTNIPDDVDEGDST 300
EMT + +D DEGDST
Sbjct: 241 RGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSEMTYCDDVEDEDEGDST 300
Query: 301 YA-TIGGEEIHYIETSSAWSQWRDELAKK-----SMATSSRAPKNHWTKEEDAVLIECLV 312
YA T E+I YIET++ WSQWRD+LA M+TS+RAP++ WT+EE+ L+ECL+
Sbjct: 301 YATTTASEDIQYIETTNEWSQWRDDLAASMFIDWHMSTSNRAPRHVWTREEEGTLVECLM 360
BLAST of PI0022090 vs. NCBI nr
Match:
KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 318.2 bits (814), Expect = 9.6e-83
Identity = 188/428 (43.93%), Postives = 227/428 (53.04%), Query Frame = 0
Query: 2 NDNKRIAEVPSDMKHRIRQFAYFRMIHENDLVCHQSTRMDRRCFTILCHLLRAVAGLQST 61
ND KRI +P + +HRIRQ AYFRMIH +DLVC QSTRMDRRCF ILCHLLR +AGL ST
Sbjct: 29 NDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTST 88
Query: 62 EMIDVEEMVAMFLHVLAHDVKNRVIQREFKRSDETVSRHFNLVLLSVLRLHDELLVKPQP 121
E++DVEEMVAMFLH+LAHDVKNRVIQREF RS ET+SRHFN+VLL+V+RLHDELL KPQP
Sbjct: 89 EVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQP 148
Query: 122 VTNTCTDTRWRWFET-----EQTRASFEMPFLEMTN---------TNIPDDVD-EGDSTY 181
V N CTD RWRWFE + T +P + TN+ D +GD Y
Sbjct: 149 VPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVYDTKGDFVY 208
Query: 182 ATIG----------------------------------------------GEEIHYIE-- 241
G G+ H E
Sbjct: 209 VLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 268
Query: 242 -------TSSAWSQWRDELAKK-------------------------------------- 301
TS + + A+
Sbjct: 269 GPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYHPVEVQCHTILACCLLH 328
Query: 302 -----------------SMATSSRAPKNHWTKEEDAVLIECLVELVLFGGWRSNNGTFRP 305
SM +SSR PK+ WTKEE+A LVELV GGWRS+NGTFRP
Sbjct: 329 NLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEEA----GLVELVNAGGWRSDNGTFRP 388
BLAST of PI0022090 vs. NCBI nr
Match:
ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])
HSP 1 Score: 310.1 bits (793), Expect = 2.6e-80
Identity = 183/461 (39.70%), Postives = 227/461 (49.24%), Query Frame = 0
Query: 2 NDNKRIAEVPSDMKHRIRQFAYFRMIHENDLVCHQSTRMDRRCFTILCHLLRAVAGLQST 61
ND KRI +P + +HRIRQ AYFRMIH +AGL ST
Sbjct: 29 NDTKRITHIPYETRHRIRQLAYFRMIH------------------------GTIAGLTST 88
Query: 62 EMIDVEEMVAMFLHVLAHDVKNRVIQREFKRSDETVSRHFNLVLLSVLRLHDELLVKPQP 121
E++DVEEMVAMFLH+LAHDVK+RVI+REF RS ET+SRHFN+VLL+V+RLH+ELL KPQP
Sbjct: 89 EVVDVEEMVAMFLHILAHDVKSRVIKREFMRSGETISRHFNMVLLAVIRLHEELLKKPQP 148
Query: 122 VTNTCTDTRWRWFET-----EQTRASFEMP------------------------------ 181
V N CTD RWRWFE + T +P
Sbjct: 149 VPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVY 208
Query: 182 --------------------------------------------FL-------------- 241
FL
Sbjct: 209 VLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWR 268
Query: 242 ------------------------------------------------------------ 301
Sbjct: 269 GPENAPSTSKEFFNMKHYSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLH 328
Query: 302 -----EMTNTNIPDDVDEGDSTYATIGGEEIHYIETSSAWSQWRDELAKKSMATSSRAPK 305
EMTN +I D++DE DST+AT ++IHYIETS+ WSQWRD LA++ M +SSR PK
Sbjct: 329 NLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEIMTSSSRLPK 388
BLAST of PI0022090 vs. NCBI nr
Match:
TYK04867.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 287.7 bits (735), Expect = 1.4e-73
Identity = 167/346 (48.27%), Postives = 216/346 (62.43%), Query Frame = 0
Query: 1 MNDNKRIAEVPSDMKHRIRQFAYFRMIHENDLVCHQSTRMDRRCFTILCHLLRAVAGLQS 60
MND++RI PSD HRIRQ AYFR IHE++LVC QSTRMDR+ FTIL HLLR V+GL S
Sbjct: 1 MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 60
Query: 61 TEMIDVEEMVAMFLHVLAHDVKNRVIQREFKRSDETVSRHFNLVLLSVLRLHDELLVKPQ 120
TE++DVEEMVA FLHVLAHDVKNR+IQREF RS ETVSR+FNL+LL+V+R+++E + +
Sbjct: 61 TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 120
Query: 121 PVTNTCTDTRWRWFET-----EQTRASFEMPFLEMTN---------TNIPDDVD-EGDST 180
TN C D RW+ FE ++T +P ++ TN+ D D +GD
Sbjct: 121 SRTNNCNDQRWKCFENCFGALDETYIKVNVPAVDRPTFTTCKGEIATNVLDVCDTKGDFV 180
Query: 181 YATIGGEEIHYIETSSAWSQ-WRDELAKKSMATSSRAPKNHWTKEEDAVLIE-------- 240
Y G E S SQ RD LA+++ R P V++
Sbjct: 181 YVLAGW------EGSVVDSQILRDALAREN---GLRVPNGSLGHSSWKVVLSFYVNLNPC 240
Query: 241 ---CLVE------------LVLFGGWRSNNGTFRPKYHSYLQKMMAERMPRHNI-TATTI 300
CL E + + GGW+S+NGTFRP Y + L MMAE++P + T T I
Sbjct: 241 PEACLDEGGGRHSCGVLNGVGVNGGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVI 300
Query: 301 DCRIKIMKRAFQEISEMRGPSCSGFSWNNELKCIIAEKDLYDSWVK 307
DCRIKI+K+ FQ I+EMRGP+CSGF WN+E KCIIAEK+L+D+W++
Sbjct: 301 DCRIKILKQTFQVIAEMRGPACSGFGWNDEEKCIIAEKELFDNWIR 337
BLAST of PI0022090 vs. NCBI nr
Match:
ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])
HSP 1 Score: 271.6 bits (693), Expect = 1.0e-68
Identity = 177/441 (40.14%), Postives = 213/441 (48.30%), Query Frame = 0
Query: 26 MIHENDLVCHQSTRMDRRCFTILCHLLRAVAGLQSTEMIDVEEMVAMFLHVLAHDVKNRV 85
MIHE+DLVC QSTRMDRR F ILCHLLR VAGL STE++DVEEMVAMFLHVLAHDVKNRV
Sbjct: 1 MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
Query: 86 IQREFKRSDETVSRHFNLVLLSVLRLHDELLVKPQPVTNTCTDTRWRWFE---------- 145
IQ+EF RS ETVSRHFN+VLL+VLRL++EL+ +P PVT+ C D RW+ FE
Sbjct: 61 IQQEFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 120
Query: 146 -----------TEQTR-------------------------------------------- 205
T +TR
Sbjct: 121 IKVNVPAGDRPTFRTRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENG 180
Query: 206 ------------------ASFEMPF----------------------------------- 265
F P+
Sbjct: 181 LQVPKGYYYLCDAGYPNAEGFLAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVI 240
Query: 266 ----------------------------------------LEMTNTNIPDDVDEGDSTYA 307
EMT N +D DEGDSTYA
Sbjct: 241 ERAFGVLKGRWTILRGKSYYPLQVQCRTILACTLLHNLINREMTYCNDVEDEDEGDSTYA 300
BLAST of PI0022090 vs. TAIR 10
Match:
AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 65.1 bits (157), Expect = 1.4e-10
Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 0
Query: 34 CHQSTRMDRRCFTILCHLLRAVAGLQSTEMIDVEEMVAMFLHVLAHDVKNRVIQREFKRS 93
C ++ RMD+ F LC LL+ L+ T I +E +A+FL ++ H+++ R +Q F S
Sbjct: 42 CFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYS 101
Query: 94 DETVSRHFNLVLLSVLRLHDELLVKPQPVTNTCT 128
ET+SRHFN VL +V+ + + QP +N+ T
Sbjct: 102 GETISRHFNNVLNAVIAISKDFF---QPNSNSDT 132
BLAST of PI0022090 vs. TAIR 10
Match:
AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )
HSP 1 Score: 60.1 bits (144), Expect = 4.4e-09
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 0
Query: 24 FRMIHENDLVCHQSTRMDRRCFTILCHLLRAVAGLQSTEMIDVEEMVAMFLHVLAHDVKN 83
+R + ++ C Q RM CFT LC++L+ LQ T I +EE VAMFL + H+
Sbjct: 56 WRRLQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVY 115
Query: 84 RVIQREFKRSDETVSRHFNLVL 106
R + F R+ ETV R F VL
Sbjct: 116 RDVGLRFGRNQETVQRKFREVL 137
BLAST of PI0022090 vs. TAIR 10
Match:
AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 57.0 bits (136), Expect = 3.7e-08
Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 0
Query: 27 IHENDLVCHQSTRMDRRCFTILCHLLRAVAGLQSTEMIDVEEMVAMFLHVLAHDVKNRVI 86
I+ N++ C RM FT LC +L GLQS+ I ++E VA+FL + A + R I
Sbjct: 17 IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76
Query: 87 QREFKRSDETVSRHFNLVLLSVLRLHDELLVKPQPV 123
F + ET+ R F+ VL ++ RL E ++P+ V
Sbjct: 77 ALRFGHAQETIWRKFHDVLKAMERLAVE-YIRPRKV 111
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SYW1 | 5.5e-92 | 43.58 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7SWD8 | 4.6e-83 | 43.93 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
E5GCB5 | 1.3e-80 | 39.70 | Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1 | [more] |
A0A5D3BZA2 | 6.7e-74 | 48.27 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
E5GBB2 | 5.0e-69 | 40.14 | Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAA0036474.1 | 1.1e-91 | 43.58 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0034843.1 | 9.6e-83 | 43.93 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
ADN34114.1 | 2.6e-80 | 39.70 | retrotransposon protein [Cucumis melo subsp. melo] | [more] |
TYK04867.1 | 1.4e-73 | 48.27 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
ADN33754.1 | 1.0e-68 | 40.14 | retrotransposon protein [Cucumis melo subsp. melo] | [more] |
Match Name | E-value | Identity | Description | |
AT5G41980.1 | 1.4e-10 | 37.23 | CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... | [more] |
AT1G43722.1 | 4.4e-09 | 40.24 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
AT5G28730.1 | 3.7e-08 | 36.46 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |