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PI0022030 (gene) Melon (PI 482460) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGCGCGTTGGGATCGAACTCACGACCTTGAGGCCAGATGCGTGGCTCTCTGCAAGTGTGACGCGTGGCGCTCTGTAAGTTGTCCGATCCTTTCTAATTTCCCAGTTTTGCCCTTGAACTTGTTTTTGTCCGTTCTTCTTTGTTAGAACTTCGATTTAGGTGATTTTAGTGGTGTTGGACTCGTATTGGAGTCTAGTTTCATATTCTACACAAAAATATCAAAATATTGAATATATGTATGTTATGGAAAAGAAATAGAGTACAATTAGATGGGTTAATAATTGCCCCAACACTTCCGTTCTAGGTACGTGGCACAGCTACAAAGAATGGTGGCAGAGAAGATGTTATGATGTAACATCCAGGGTTCACCGACAATAGACTGTCGAATAAAGACTCTAAAGAGAATGTTCCAGACCATTGCAGAAATGTATGGCCCATCATGCAGTGGGTTTGGATGGAACGATGAATTCAAGTGCATCATTGCTGAGAAGGAATTGTTTGACAATTGGGTGAAGGTATCTATTCATTCTGTCGACCGTTATTCATTTATAATCGTAATAAAAAACTAATAATTTATTGAAACGTTTTCACAGAGTCATTCTGCCGCTAAGGGCCTCCTCAACAAATCTTTCCCACATTACGATGACTTGATCTACGTATTTGGGAAAGATTATGCTACTGAAACACGCGTAGAGACATTCGTCGATGTGTGGTCAAATATGCCAGGAGGGTACGAGGGATTTTCTACTGACGATGCTAACGATCCAGAGATCCCTATGATTTATAGTCAGGGACTAGACATGTTGCCTGATGACATCATGGAGATATGA ATGTCGCGCGTTGGGATCGAACTCACGACCTTGAGGCCAGATGCGTGGCTCTCTGCAAGTGTGACGCGTGGCGCTCTTGGGTTTGGATGGAACGATGAATTCAAGTGCATCATTGCTGAGAAGGAATTGTTTGACAATTGGGTGAAGAGTCATTCTGCCGCTAAGGGCCTCCTCAACAAATCTTTCCCACATTACGATGACTTGATCTACGTATTTGGGAAAGATTATGCTACTGAAACACGCGTAGAGACATTCGTCGATGTGTGGTCAAATATGCCAGGAGGGTACGAGGGATTTTCTACTGACGATGCTAACGATCCAGAGATCCCTATGATTTATAGTCAGGGACTAGACATGTTGCCTGATGACATCATGGAGATATGA ATGTCGCGCGTTGGGATCGAACTCACGACCTTGAGGCCAGATGCGTGGCTCTCTGCAAGTGTGACGCGTGGCGCTCTTGGGTTTGGATGGAACGATGAATTCAAGTGCATCATTGCTGAGAAGGAATTGTTTGACAATTGGGTGAAGAGTCATTCTGCCGCTAAGGGCCTCCTCAACAAATCTTTCCCACATTACGATGACTTGATCTACGTATTTGGGAAAGATTATGCTACTGAAACACGCGTAGAGACATTCGTCGATGTGTGGTCAAATATGCCAGGAGGGTACGAGGGATTTTCTACTGACGATGCTAACGATCCAGAGATCCCTATGATTTATAGTCAGGGACTAGACATGTTGCCTGATGACATCATGGAGATATGA MSRVGIELTTLRPDAWLSASVTRGALGFGWNDEFKCIIAEKELFDNWVKSHSAAKGLLNKSFPHYDDLIYVFGKDYATETRVETFVDVWSNMPGGYEGFSTDDANDPEIPMIYSQGLDMLPDDIMEI Homology
BLAST of PI0022030 vs. ExPASy TrEMBL
Match: A0A5A7U4M2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00330 PE=4 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 3.7e-32 Identity = 67/100 (67.00%), Postives = 78/100 (78.00%), Query Frame = 0
BLAST of PI0022030 vs. ExPASy TrEMBL
Match: A0A5A7VBC5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1290G00070 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 1.4e-31 Identity = 67/99 (67.68%), Postives = 79/99 (79.80%), Query Frame = 0
BLAST of PI0022030 vs. ExPASy TrEMBL
Match: A0A5D3CWJ7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1706G00110 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 4.1e-31 Identity = 64/99 (64.65%), Postives = 76/99 (76.77%), Query Frame = 0
BLAST of PI0022030 vs. ExPASy TrEMBL
Match: A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 7.1e-31 Identity = 63/99 (63.64%), Postives = 80/99 (80.81%), Query Frame = 0
BLAST of PI0022030 vs. ExPASy TrEMBL
Match: A0A5A7SXX8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00320 PE=3 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 7.1e-31 Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 0
BLAST of PI0022030 vs. NCBI nr
Match: KAA0050782.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 147.5 bits (371), Expect = 7.7e-32 Identity = 67/100 (67.00%), Postives = 78/100 (78.00%), Query Frame = 0
BLAST of PI0022030 vs. NCBI nr
Match: KAA0063726.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 145.6 bits (366), Expect = 2.9e-31 Identity = 67/99 (67.68%), Postives = 79/99 (79.80%), Query Frame = 0
BLAST of PI0022030 vs. NCBI nr
Match: TYK15304.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 144.1 bits (362), Expect = 8.5e-31 Identity = 64/99 (64.65%), Postives = 76/99 (76.77%), Query Frame = 0
BLAST of PI0022030 vs. NCBI nr
Match: KAA0035413.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 143.3 bits (360), Expect = 1.5e-30 Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 0
BLAST of PI0022030 vs. NCBI nr
Match: KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 143.3 bits (360), Expect = 1.5e-30 Identity = 63/99 (63.64%), Postives = 80/99 (80.81%), Query Frame = 0
BLAST of PI0022030 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). ) HSP 1 Score: 43.5 bits (101), Expect = 1.5e-04 Identity = 19/83 (22.89%), Postives = 40/83 (48.19%), Query Frame = 0
BLAST of PI0022030 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). ) HSP 1 Score: 43.5 bits (101), Expect = 1.5e-04 Identity = 19/83 (22.89%), Postives = 40/83 (48.19%), Query Frame = 0
BLAST of PI0022030 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 42.7 bits (99), Expect = 2.5e-04 Identity = 14/49 (28.57%), Postives = 31/49 (63.27%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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