PI0022011 (gene) Melon (PI 482460) v1

Overview
NamePI0022011
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Locationchr12: 20888223 .. 20892921 (+)
RNA-Seq ExpressionPI0022011
SyntenyPI0022011
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTACCTTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAAGTTGCAAAATGTGGAGTTTGTGGTTTAATTGGACATCCAAATGACAAGTGCCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGTAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGATAACCAACGACCCGCACAAGCAACTTCATCTTCAAACAATCAAGGTACTAATTTGGAAGACTTAGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAGAATGAAATGAAACAGAAAATATCTCAATCAACAAATGCAATAAGTAAGCTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGACCACGCCAACGTAAGTGCCATCTCGCTTAGGAGCGGTAAGACTCTGGAAACCCCTTCTAGCGAAGAAAAGGTAACTTCTATCCCTAACCTTCTAGAAGATAAAAATGATAAAAAGGAAGAAAAAGTAGAAACAAGTGTCCCACCATCTTCTTCAAAAGGTAAAAATCATGTTAATGATTATTCTCCTTATATCCCTAATGCTCCTTTTCCTTCCAGATTGGCCCTTAAAAAGAAAGAATCACCGAAGGAAGAAGAACTATTGGAGATGTTTAGGAAAATGCAAATTAACCTGCCTCTACTTGACGCAATTCAACAAGTCCCGAGGTATGCGAAGTTCTTAAAAGAATTATGCACAAACAAGAGAAAAATCAAAGAACAACCGATGGTAAGTCACAACGTTTCTGCTCTTCTTAAAACTTCAATACCTGCAAAACAAAATGATCCAGGTATGTTTTCTCTTCCTTGTGTTATAGGAAATAGACCAATTTCAAATGCCATGCTAGACTTAGGAGCCTCTATCAATGTCATGCCTTACTCTGTTTTTAAAGATCTTGAATTAAATAATCTGCAAAAAACAAATGTATGCATTCAACTTGCTGATAGATCTTTCATATCTCTGTTAGGAATAGTTGAAGATGTGCTAGTAAAAGTAGATAAACTAATATTTCCTGCGGATTTCTATATTTTAGAAATGAATGATGCATGCTCTAAACCTTCCCATTCAATTCTTCTAGGAAGACTTTTCCTTAAGACTGCTAAAGCTATCATAGATGTAGACAAAGGTTGTCTTAGTGTAGAATTCGATGGAGACATCGTGACATTTAATATTTTTGAATCCATGAAATTTCCTGAAGAATGTCTTTCTATATGCTTCTTACAATTGCATGATGAATTTGAACAATTTCCTATGAGTAATGAATTTTCAAAACAAGATTTAGAAGAAATAGAAGAAGATATTTGTTTGAGTGAATTGAATGAAGAAAAAAAAATTGTAGAAGTAGAAATGAATGAAGAAATAAATCTTGATGGAATTGATCCTAACACTATTTCTTTTTCTCCCCAGGAACCAGGAATTGAGCTTAAGACTCTCCCTCCCAACCTGAAATACGTATTCTTAGGAGAAAAGAATACGCTTCCTGTAATAATATCAAAAGAGCTACACCAAGAAGAAGAAGAAAGACTAATTAAAGTCTTGAAAAACAAAAGAAAAGCCCTTGGATGGACTTTGGAAGACCTTAAAGGTATTTTCCCTTCTTTTTGCACTCATAGAATTATTCTAGAAGAAGGAGCCAAAGACAAAGTCCAATCACAAAGAAGGCTAAACCCCGTGTTGAAAGACGTTGTCTTGAAAGAAATTCTCAAGTTAAAAGATGCTGGGATTATCTACCCCGTCCCCGATAGTACATGGGTTAGTCTTATCCATGTTGTGCCAAAAAAGACGGGAATGACGGTGATAGAAAACGAAAAAGGCGAAATGATCCCGACGAGAGTCCAAAACGGCTGGAGAATGTGCATCGACTACCGCAAATTAAACGGGGTAACAAAGAAAGATCACTTTTCCTTACCTTTCCTAGATCAAATGATTGAACGTCTAGCCGGTAGGTCGTATTTTTGCTTTTTAGATGGTTTTTCTGGATTCTATCAAATAACAATTGCATGCGAAGATCAAAGTAAAACTACATTTACATGCGATTACGGTACTTATGCATTTAGACGTATGCCATTTGGATTATGCAATGCACCTGGTACATTCCAACGCTGTATGATGAGTATCTTTTCTGATTTCATAGAAAAATGCATAGAAGTCTTTATGGATGATTTTACTGTTTACGGTGATAATTTTGATGCATGCTTAACCCTGAGGCAGGAGATCATTTTGGCACAGCGGGATGATCCGTTTTTGGTTGAGAAACGCCGTTTAGCGGAGACGGGGCAAGCTCAGGAGTTCTCTATTTCTGCTGACGACGGACTTTTGTTTGAGGGGTGTCTATGTGTGCCGGCTGTCGGCACAGTTTTGGTGGATTTGTTGACCGAAGCTCATAGTTCTCCATTATCCATGCATCCTGGTAGTACCAAGATGTATCAGGACCTGAAGCGAGTTTACTGGTGGCGCAACATGAAAAGAGAAGTGGCAGACTTCGTCAGTAGGTGCTTGGTGTGCTAGCAGGTTAAGGCATCGAGGTAGAAGCCAGCAAGGCTGTTGCAACCCTTGGACGTGCCAGAGTGAAAGTGGGAGAATGTGTCCATGGATTTCATCTCAGGTTTGCCTAAGACCCTGAAGGGATTCACCGTGATGTGGGTTGTAGTTGACAAACTCACGAAGTCAGCGCACTTTATCCCGAGAAAGTCCACGTACACAGCCAGTAAGTGGGTGTAGTTGTACCTGACCGAGATAGTGAGACTGCATGGAGTGCCAGTGTCGATAGTGTCAGACAGAGATGTCCGTTTTACTTCCAAGTTTTGGAAGGGACTCCAGACTGCTATGGGTTCCAGGTTGGACTTCATTACAGCTTTTCACCCTCAGACTGACGGTCAGACTGAGCGTTTGAATCAGATCCTAGAGGACATGCTGCGGGCTTGTGTGTTAGAGTTTCCAGGGAGTTGGGACTCTCACTTGTATCTCATGAAGTTTTCCTACAACAACAGCTTCTAGGCTACCATTGGCATGGCGCCGTTTGAGGCTTTGTATGGAAAGTGTTGCAGATCGCCTGTTTGTTGGGGCGAGGTAGGTGAACGAAAGTTAGTAGGCCCAGAGTTGGTTCAGTATACTAACAAGGCCATACAGAAAATCAGAGCCCGTATGCAGGCCGCTCAAATAGGCAGAAGAGTTATTCAGATGTGAGGAGAAAGGACCTTGAGTTTGAAGTGGGCGACAAAGTGTTCTTGAAAGTAGCTCCCATGAAGGGTGTCTTACGTTTTGAGCAGAAAGGAAAGCTGAGTCCTCGTTTCGTAGGACCCTTTGAGATCTTAGAGCGGATTGGCCCCGTGGCGTACCGCTTGGCCTTGCCCCCTTCACTCTCTGCAGTTCATGCTGTCTTCCACGTATCGATGTTGAGGAAATACGTGGCTGACCCATCTCATGTTTTGGATTACGAGTCTTTGGCAATTGATGAGGATTTGAGCTATGTTGAACATCCAGTTGGGATTTTGACCAAGGAAGTAAGGACGCTTCGAAACCGGGAGATTTCTTTGGTGAAGGTTCTTTGGCGCAATCACCGAGTGGAAGAGGCCACTTGGGAGCGGGAGGATGACATGAGAGCTCGTTACCCAGAGTTGTTCGAGGGTTAGAACTTTCGAGGACGAAAGTTCTTTAAGGAGGGGAGAATGTAACGACCGCAAGCTTGGTGCTAGGCATTAAGGTAATCCTTCTCATCTAATTTTGTTAATTAAAGGAAAAAGGGTTAATTTTATTAAGGTTGTATTTGAAATTTCGAAAGAAATTGGATTAAAGTTGTGAAAATACCAAAGTATTGGGTTTTAAGGGTAATTTTGGTATTTTGGGCCTTAATCCCTTCTTCAACGCCTAAACCCTCTCACTTTTTTCTTTCTTCCTTGCGTGCAGTCCCCAAGCAGCCACCATTTTCTCTCCATAAATTCCTTTTCCGTCGCGCATTGCCTCGCCGTCCGGAAGCCTTCTCCGCCTGCCCGTACCGCTGGAAAACCCTTGTCGCTTGCTTGGGTGATCTGGGTTTGTTCTTTCGCGAGGTGGAGTAGTGTGAGGCCTCTTCGTGGTCATCTCAGTGTTTGTTTGGTTTTTCCTCTAGTAAGTTCTTTCGAAAACTCTCCTTCACCTAGCCTAGTTTCCTTTTCGCATTTCGTTTGGTTCTTCCAACTACCCCATGAAGTGACTCTTCTCTTGGCAGTCCCCTTAGTTTGTGTTCTGCCTTAGCTTCAGTAAGTCTCTTTGTTCACGGGAGGAAGTGTGTTCGCAAGCTGTGAAGATCGGGCCGCGAGCTGAAGTGTTAGTTCGAGAGCTTCCTTTGCCGCCAGCTGTGGTCTGCGTTCAGCCTCGCGTCTCGCCAAGTTACCTTGTCCGCTAGCGGTGTCTCGCTGCATTCTGAGGTCTCTGCCCGCCTCTTCTTTTCGCAAGTTCCCTTGGTAGCGAGGTAAGTCTTCATTGTTGCGGTTTGGTTTTGGTTCTCCGAATTCTTGAATCTAAGTCTTTTCGCCTGGTGTTTGGTCTTGCCGCGCAGAGTGTGGTCTCGCCAAGGAGTAAGCGTTTGGAAGCTTGCCTTTCTCGCGATTCAGACCCTTCCTTACCGCATGGTGCACTTGGACTTAACGCATCCGAGGTAAGGGGTTTCTCTACCATTTAG

mRNA sequence

ATGACTACCTTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAAGTTGCAAAATGTGGAGTTTGTGGTTTAATTGGACATCCAAATGACAAGTGCCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGTAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGATAACCAACGACCCGCACAAGCAACTTCATCTTCAAACAATCAAGGTACTAATTTGGAAGACTTAGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAGAATGAAATGAAACAGAAAATATCTCAATCAACAAATGCAATAAGTAAGCTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGACCACGCCAACGTAAGTGCCATCTCGCTTAGGAGCGGTAAGACTCTGGAAACCCCTTCTAGCGAAGAAAAGTCCCCAAGCAGCCACCATTTTCTCTCCATAAATTCCTTTTCCGTCGCGCATTGCCTCGCCGTCCGGAAGCCTTCTCCGCCTGCCCGTACCGCTGGAAAACCCTTGTCGCTTGCTTGGGTGATCTGGGTTTGTTCTTTCGCGAGGTGGAGTAGTGTGAGGCCTCTTCGTGGTCATCTCAGTGTTTGTTTGGTTTTTCCTCTATCTCTTTGTTCACGGGAGGAAGTGTGTTCGCAAGCTGTGAAGATCGGGCCGCGAGCTGAAGTGTTAGTTCGAGAGCTTCCTTTGCCGCCAGCTGTGGTCTGCGTTCAGCCTCGCGTCTCGCCAAGTCTCTGCCCGCCTCTTCTTTTCGCAAGTTCCCTTGGTAGCGAGGTAAGTCTTCATTGTTGCGGTTTGGTTTTGGTTCTCCGAATTCTTGAATCTAAGTCTTTTCGCCTGGTGTTTGGTCTTGCCGCGCAGAGTGTGGTCTCGCCAAGGAGTAAGCGTTTGGAAGCTTGCCTTTCTCGCGATTCAGACCCTTCCTTACCGCATGGTGCACTTGGACTTAACGCATCCGAGGTAAGGGGTTTCTCTACCATTTAG

Coding sequence (CDS)

ATGACTACCTTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAAGTTGCAAAATGTGGAGTTTGTGGTTTAATTGGACATCCAAATGACAAGTGCCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGTAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGATAACCAACGACCCGCACAAGCAACTTCATCTTCAAACAATCAAGGTACTAATTTGGAAGACTTAGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAGAATGAAATGAAACAGAAAATATCTCAATCAACAAATGCAATAAGTAAGCTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGACCACGCCAACGTAAGTGCCATCTCGCTTAGGAGCGGTAAGACTCTGGAAACCCCTTCTAGCGAAGAAAAGTCCCCAAGCAGCCACCATTTTCTCTCCATAAATTCCTTTTCCGTCGCGCATTGCCTCGCCGTCCGGAAGCCTTCTCCGCCTGCCCGTACCGCTGGAAAACCCTTGTCGCTTGCTTGGGTGATCTGGGTTTGTTCTTTCGCGAGGTGGAGTAGTGTGAGGCCTCTTCGTGGTCATCTCAGTGTTTGTTTGGTTTTTCCTCTATCTCTTTGTTCACGGGAGGAAGTGTGTTCGCAAGCTGTGAAGATCGGGCCGCGAGCTGAAGTGTTAGTTCGAGAGCTTCCTTTGCCGCCAGCTGTGGTCTGCGTTCAGCCTCGCGTCTCGCCAAGTCTCTGCCCGCCTCTTCTTTTCGCAAGTTCCCTTGGTAGCGAGGTAAGTCTTCATTGTTGCGGTTTGGTTTTGGTTCTCCGAATTCTTGAATCTAAGTCTTTTCGCCTGGTGTTTGGTCTTGCCGCGCAGAGTGTGGTCTCGCCAAGGAGTAAGCGTTTGGAAGCTTGCCTTTCTCGCGATTCAGACCCTTCCTTACCGCATGGTGCACTTGGACTTAACGCATCCGAGGTAAGGGGTTTCTCTACCATTTAG

Protein sequence

MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINSFSVAHCLAVRKPSPPARTAGKPLSLAWVIWVCSFARWSSVRPLRGHLSVCLVFPLSLCSREEVCSQAVKIGPRAEVLVRELPLPPAVVCVQPRVSPSLCPPLLFASSLGSEVSLHCCGLVLVLRILESKSFRLVFGLAAQSVVSPRSKRLEACLSRDSDPSLPHGALGLNASEVRGFSTI
Homology
[Close]
BLAST of PI0022011 vs. ExPASy TrEMBL
Match: E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 7.9e-61
Identity = 116/163 (71.17%), Postives = 144/163 (88.34%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNP
Sbjct: 57  MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116

Query: 61  NLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQKISQSTNAISKLEGK 120
           NLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQ+++Q T AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS 164
           GKLPAQPD+ANVSAISLRSGK L+TP+++EK  +S   L +NS
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEKKVTS-KLLPLNS 218

[Close]
BLAST of PI0022011 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.3e-60
Identity = 112/155 (72.26%), Postives = 140/155 (90.32%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNP
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201

Query: 61  NLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQKISQSTNAISKLEGK 120
           NLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ EMKQ+++Q T AISK++GK
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 261

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSS 156
           GKL AQ ++ANVSA+SLRSGK L+TP+++EK  +S
Sbjct: 262 GKLSAQSNYANVSAVSLRSGKILDTPTTKEKKATS 296

[Close]
BLAST of PI0022011 vs. ExPASy TrEMBL
Match: A0A5D3CFE7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00840 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.3e-60
Identity = 113/155 (72.90%), Postives = 135/155 (87.10%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD P
Sbjct: 186 MTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKP 245

Query: 61  NLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQKISQSTNAISKLEGK 120
           NLRWGND Q   QA S+S+NQGTNLED++KAL TNT+SFQ EMKQ+++Q T AISK++GK
Sbjct: 246 NLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGK 305

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSS 156
           GKLPAQPDHANVSAISLRSGK L+TP+++EK   S
Sbjct: 306 GKLPAQPDHANVSAISLRSGKILDTPTTKEKKVGS 340

[Close]
BLAST of PI0022011 vs. ExPASy TrEMBL
Match: A0A1S3CQU8 (uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.3e-60
Identity = 114/163 (69.94%), Postives = 142/163 (87.12%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG ++KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNP
Sbjct: 56  MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115

Query: 61  NLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQKISQSTNAISKLEGK 120
           NLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ +MKQ+++Q T  ISK++GK
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGK 175

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS 164
           GKLPAQPDH NVSAISLRSGK L+TP+++EK  +S   L +NS
Sbjct: 176 GKLPAQPDHVNVSAISLRSGKILDTPTTKEKKVTS-KLLPLNS 217

[Close]
BLAST of PI0022011 vs. ExPASy TrEMBL
Match: A0A5A7VE49 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00600 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.1e-60
Identity = 115/163 (70.55%), Postives = 143/163 (87.73%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPHGNTYN+GWRDNP
Sbjct: 33  MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKYPEVIEDVNIVRRYDPHGNTYNSGWRDNP 92

Query: 61  NLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQKISQSTNAISKLEGK 120
            LRWGNDNQ+  QA S+S+NQGTNLED++KALA NT+SFQ EMKQ+++Q T AISK++GK
Sbjct: 93  KLRWGNDNQKHIQAPSTSSNQGTNLEDIIKALAINTLSFQQEMKQQMTQLTTAISKMDGK 152

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS 164
           GKLPAQP+HANVSAISLRSGK L+TP+++EK  +S   L +NS
Sbjct: 153 GKLPAQPNHANVSAISLRSGKILDTPTTKEKKVTS-KLLPLNS 194

[Close]
BLAST of PI0022011 vs. NCBI nr
Match: ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 244.2 bits (622), Expect = 1.6e-60
Identity = 116/163 (71.17%), Postives = 144/163 (88.34%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNP
Sbjct: 57  MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116

Query: 61  NLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQKISQSTNAISKLEGK 120
           NLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQ+++Q T AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS 164
           GKLPAQPD+ANVSAISLRSGK L+TP+++EK  +S   L +NS
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEKKVTS-KLLPLNS 218

[Close]
BLAST of PI0022011 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 242.7 bits (618), Expect = 4.8e-60
Identity = 112/155 (72.26%), Postives = 140/155 (90.32%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNP
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201

Query: 61  NLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQKISQSTNAISKLEGK 120
           NLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ EMKQ+++Q T AISK++GK
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 261

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSS 156
           GKL AQ ++ANVSA+SLRSGK L+TP+++EK  +S
Sbjct: 262 GKLSAQSNYANVSAVSLRSGKILDTPTTKEKKATS 296

[Close]
BLAST of PI0022011 vs. NCBI nr
Match: XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])

HSP 1 Score: 242.7 bits (618), Expect = 4.8e-60
Identity = 114/163 (69.94%), Postives = 142/163 (87.12%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG ++KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNP
Sbjct: 56  MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115

Query: 61  NLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQKISQSTNAISKLEGK 120
           NLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ +MKQ+++Q T  ISK++GK
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGK 175

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS 164
           GKLPAQPDH NVSAISLRSGK L+TP+++EK  +S   L +NS
Sbjct: 176 GKLPAQPDHVNVSAISLRSGKILDTPTTKEKKVTS-KLLPLNS 217

[Close]
BLAST of PI0022011 vs. NCBI nr
Match: TYK10613.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 242.7 bits (618), Expect = 4.8e-60
Identity = 113/155 (72.90%), Postives = 135/155 (87.10%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD P
Sbjct: 186 MTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKP 245

Query: 61  NLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQKISQSTNAISKLEGK 120
           NLRWGND Q   QA S+S+NQGTNLED++KAL TNT+SFQ EMKQ+++Q T AISK++GK
Sbjct: 246 NLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGK 305

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSS 156
           GKLPAQPDHANVSAISLRSGK L+TP+++EK   S
Sbjct: 306 GKLPAQPDHANVSAISLRSGKILDTPTTKEKKVGS 340

[Close]
BLAST of PI0022011 vs. NCBI nr
Match: KAA0065554.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-59
Identity = 115/163 (70.55%), Postives = 143/163 (87.73%), Query Frame = 0 

Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPHGNTYN+GWRDNP
Sbjct: 33  MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKYPEVIEDVNIVRRYDPHGNTYNSGWRDNP 92

Query: 61  NLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQKISQSTNAISKLEGK 120
            LRWGNDNQ+  QA S+S+NQGTNLED++KALA NT+SFQ EMKQ+++Q T AISK++GK
Sbjct: 93  KLRWGNDNQKHIQAPSTSSNQGTNLEDIIKALAINTLSFQQEMKQQMTQLTTAISKMDGK 152

Query: 121 GKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS 164
           GKLPAQP+HANVSAISLRSGK L+TP+++EK  +S   L +NS
Sbjct: 153 GKLPAQPNHANVSAISLRSGKILDTPTTKEKKVTS-KLLPLNS 194

The following BLAST results are available for this feature:
BLAST of PI0022011 vs.
Match NameE-valueIdentityDescription
BLAST of PI0022011 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
E5GBZ47.9e-6171.17Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5D3CRR82.3e-6072.26Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3CFE72.3e-6072.90Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A1S3CQU82.3e-6069.94uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=... [more]
A0A5A7VE495.1e-6070.55Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
BLAST of PI0022011 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN33993.11.6e-6071.17retrotransposon gag protein [Cucumis melo subsp. melo][more]
KAA0047407.14.8e-6072.26retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos... [more]
XP_008465649.14.8e-6069.94PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo][more]
TYK10613.14.8e-6072.90retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0065554.11.1e-5970.55retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of PI0022011 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 100..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..156

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0022011.1PI0022011.1mRNA