Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCACGCGCGAAGACGTTCGTCGATGTGGGGTCGAATGTGCTTGGAAGGTACGAGGGATTTCCCGCTGACGATGGAAACAATATAGAGATCCTTATGATGTATAGTCAGGGACTAGACATGTCGCCTAATGACATCATGGGCACACAACCTGATCGCTCAAGTGAGGGGAGGATTGGTTCAAGCGGATCCAAGAGAAAGCGGGGAGGCCAAACGGTAGAAACTATGGAAATCATTCGCAATGCAATGGACTATGCAAATGACCAGCTGAAGGCCATTGCAGAGTGGTTGAATTTACAACGTCAAGATGAGCGTGCCTCCCGTGCAGAAGTCGTTAGACAATTACAGGGAATCCCTGAACTGAGTACCCACGACAGGATGCACCTTATGCAGATACTGATGTGCAATGTCAATGATATGAAAGCATTTTTTGAGGTACTCGAGGAGCTTAAATTGGACTATTGCACAGTCATTCTCGAAGATAGCGCTTGA
mRNA sequence
ATGGGAGCACGCGCGAAGACGTTCGTCGATGTGGGGTCGAATGTGCTTGGAAGGTACGAGGGATTTCCCGCTGACGATGGAAACAATATAGAGATCCTTATGATGTATAGTCAGGGACTAGACATGTCGCCTAATGACATCATGGGCACACAACCTGATCGCTCAAGTGAGGGGAGGATTGGTTCAAGCGGATCCAAGAGAAAGCGGGGAGGCCAAACGGTAGAAACTATGGAAATCATTCGCAATGCAATGGACTATGCAAATGACCAGCTGAAGGCCATTGCAGAGTGGTTGAATTTACAACGTCAAGATGAGCGTGCCTCCCGTGCAGAAGTCGTTAGACAATTACAGGGAATCCCTGAACTGAGTACCCACGACAGGATGCACCTTATGCAGATACTGATGTGCAATGTCAATGATATGAAAGCATTTTTTGAGGTACTCGAGGAGCTTAAATTGGACTATTGCACAGTCATTCTCGAAGATAGCGCTTGA
Coding sequence (CDS)
ATGGGAGCACGCGCGAAGACGTTCGTCGATGTGGGGTCGAATGTGCTTGGAAGGTACGAGGGATTTCCCGCTGACGATGGAAACAATATAGAGATCCTTATGATGTATAGTCAGGGACTAGACATGTCGCCTAATGACATCATGGGCACACAACCTGATCGCTCAAGTGAGGGGAGGATTGGTTCAAGCGGATCCAAGAGAAAGCGGGGAGGCCAAACGGTAGAAACTATGGAAATCATTCGCAATGCAATGGACTATGCAAATGACCAGCTGAAGGCCATTGCAGAGTGGTTGAATTTACAACGTCAAGATGAGCGTGCCTCCCGTGCAGAAGTCGTTAGACAATTACAGGGAATCCCTGAACTGAGTACCCACGACAGGATGCACCTTATGCAGATACTGATGTGCAATGTCAATGATATGAAAGCATTTTTTGAGGTACTCGAGGAGCTTAAATTGGACTATTGCACAGTCATTCTCGAAGATAGCGCTTGA
Protein sequence
MGARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA
Homology
BLAST of PI0021914 vs. ExPASy TrEMBL
Match:
A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)
HSP 1 Score: 229.2 bits (583), Expect = 1.3e-56
Identity = 113/159 (71.07%), Postives = 135/159 (84.91%), Query Frame = 0
Query: 6 KTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGS 65
+TF DVGSN YEGF ADDGN++EI MMYSQG+DM +DIMGT+PDRS+EGR GSSGS
Sbjct: 6 ETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGS 65
Query: 66 KRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPELSTH 125
KRK+GGQ VETMEIIRN M+++ND+LKAI EWLN+QRQD A EVVRQLQ IPELS +
Sbjct: 66 KRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRY 125
Query: 126 DRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA 165
DR+ MQILMCNV+DMKAF ++L+ELKLDYCT+I +D+A
Sbjct: 126 DRVRSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 164
BLAST of PI0021914 vs. ExPASy TrEMBL
Match:
A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)
HSP 1 Score: 166.8 bits (421), Expect = 7.7e-38
Identity = 87/162 (53.70%), Postives = 120/162 (74.07%), Query Frame = 0
Query: 2 GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIG 61
G RA++F DVGSN Y+ F A+ ++ + MYS+GL+MSP+++MGT+ R SEGR
Sbjct: 113 GGRAESFADVGSNDPTGYDAFAANAASDTDFQPMYSRGLNMSPDELMGTRTARVSEGRYV 172
Query: 62 SSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPE 121
SSGSK+KRGG T+++ +I+R A++Y N+QL IAEW LQRQD +R EVVRQL+ IPE
Sbjct: 173 SSGSKQKRGGSTIDSGDILRTAIEYGNEQLNRIAEWHVLQRQDATQTRQEVVRQLEAIPE 232
Query: 122 LSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS 164
L+ DR LM+IL+ NVNDMKAF EV + +K YC++ILE++
Sbjct: 233 LTLMDRCRLMRILIHNVNDMKAFLEVPDNMK-PYCSIILEEN 273
BLAST of PI0021914 vs. ExPASy TrEMBL
Match:
A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)
HSP 1 Score: 165.2 bits (417), Expect = 2.2e-37
Identity = 85/162 (52.47%), Postives = 116/162 (71.60%), Query Frame = 0
Query: 2 GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIG 61
G RA++F D+GSN Y+ F ADD ++ + L MYS GL+MSP+D+M T+ R SE R
Sbjct: 111 GGRAESFADIGSNDPAGYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNV 170
Query: 62 SSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPE 121
SSGSKRKR G ++ +I+R AM+Y N+QL IAEW LQRQD +R E+VRQL+ IPE
Sbjct: 171 SSGSKRKRSGHATDSGDIVRTAMEYGNEQLHRIAEWPILQRQDATETRQEIVRQLEVIPE 230
Query: 122 LSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS 164
L+ DR LM+I+M NV+DMKAF EV + +K YC++IL+++
Sbjct: 231 LTLMDRCRLMRIIMRNVDDMKAFLEVPDNMKYPYCSIILQEN 272
BLAST of PI0021914 vs. ExPASy TrEMBL
Match:
A0A5D3CL79 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00920 PE=4 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 8.5e-37
Identity = 89/151 (58.94%), Postives = 110/151 (72.85%), Query Frame = 0
Query: 1 MGARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRI 60
MG R K FVDVGSNV YEGF D N++EI MYS+GLDMS I GT+ ++E R
Sbjct: 1 MGGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRA 60
Query: 61 GSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIP 120
G S SK+K+GGQ++ET+EIIRN M+YANDQLKAIAEW N+Q QD +R E VRQLQGI
Sbjct: 61 GLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGIL 120
Query: 121 ELSTHDRMHLMQILMCNVNDMKAFFEVLEEL 152
ELS D+ H + +LM NVNDMKA +V +++
Sbjct: 121 ELSRLDKAHCICLLMHNVNDMKASLDVSDDM 151
BLAST of PI0021914 vs. ExPASy TrEMBL
Match:
A0A5A7VIQ2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G00470 PE=4 SV=1)
HSP 1 Score: 160.2 bits (404), Expect = 7.2e-36
Identity = 92/162 (56.79%), Postives = 114/162 (70.37%), Query Frame = 0
Query: 3 ARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGS 62
A +TFVDV SNV YEGFPA+DGN+ EI M+Y SEGR S
Sbjct: 10 ACVETFVDVRSNVFEVYEGFPANDGNDSEIPMIYG----------------HLSEGRNAS 69
Query: 63 SGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPEL 122
S SKRK G QT ET++II NA++Y N QLKAIA+ N+QRQ + ASRAEV+ QLQGIP+L
Sbjct: 70 SRSKRKWGDQTTETVKIICNAIEYTNGQLKAIAKRSNVQRQADDASRAEVMSQLQGIPKL 129
Query: 123 STHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA 165
ST DR+ L+ I+M NV++M+AF EV +ELKLDYCT +LED+A
Sbjct: 130 STRDRVRLLWIIMHNVHNMRAFLEVPDELKLDYCTTMLEDNA 155
BLAST of PI0021914 vs. NCBI nr
Match:
KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 229.2 bits (583), Expect = 2.6e-56
Identity = 113/159 (71.07%), Postives = 135/159 (84.91%), Query Frame = 0
Query: 6 KTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGS 65
+TF DVGSN YEGF ADDGN++EI MMYSQG+DM +DIMGT+PDRS+EGR GSSGS
Sbjct: 6 ETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGS 65
Query: 66 KRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPELSTH 125
KRK+GGQ VETMEIIRN M+++ND+LKAI EWLN+QRQD A EVVRQLQ IPELS +
Sbjct: 66 KRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRY 125
Query: 126 DRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA 165
DR+ MQILMCNV+DMKAF ++L+ELKLDYCT+I +D+A
Sbjct: 126 DRVRSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 164
BLAST of PI0021914 vs. NCBI nr
Match:
KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 166.8 bits (421), Expect = 1.6e-37
Identity = 87/162 (53.70%), Postives = 120/162 (74.07%), Query Frame = 0
Query: 2 GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIG 61
G RA++F DVGSN Y+ F A+ ++ + MYS+GL+MSP+++MGT+ R SEGR
Sbjct: 113 GGRAESFADVGSNDPTGYDAFAANAASDTDFQPMYSRGLNMSPDELMGTRTARVSEGRYV 172
Query: 62 SSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPE 121
SSGSK+KRGG T+++ +I+R A++Y N+QL IAEW LQRQD +R EVVRQL+ IPE
Sbjct: 173 SSGSKQKRGGSTIDSGDILRTAIEYGNEQLNRIAEWHVLQRQDATQTRQEVVRQLEAIPE 232
Query: 122 LSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS 164
L+ DR LM+IL+ NVNDMKAF EV + +K YC++ILE++
Sbjct: 233 LTLMDRCRLMRILIHNVNDMKAFLEVPDNMK-PYCSIILEEN 273
BLAST of PI0021914 vs. NCBI nr
Match:
KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 165.2 bits (417), Expect = 4.6e-37
Identity = 85/162 (52.47%), Postives = 116/162 (71.60%), Query Frame = 0
Query: 2 GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIG 61
G RA++F D+GSN Y+ F ADD ++ + L MYS GL+MSP+D+M T+ R SE R
Sbjct: 111 GGRAESFADIGSNDPAGYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNV 170
Query: 62 SSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPE 121
SSGSKRKR G ++ +I+R AM+Y N+QL IAEW LQRQD +R E+VRQL+ IPE
Sbjct: 171 SSGSKRKRSGHATDSGDIVRTAMEYGNEQLHRIAEWPILQRQDATETRQEIVRQLEVIPE 230
Query: 122 LSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS 164
L+ DR LM+I+M NV+DMKAF EV + +K YC++IL+++
Sbjct: 231 LTLMDRCRLMRIIMRNVDDMKAFLEVPDNMKYPYCSIILQEN 272
BLAST of PI0021914 vs. NCBI nr
Match:
TYK11924.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 163.3 bits (412), Expect = 1.8e-36
Identity = 89/151 (58.94%), Postives = 110/151 (72.85%), Query Frame = 0
Query: 1 MGARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRI 60
MG R K FVDVGSNV YEGF D N++EI MYS+GLDMS I GT+ ++E R
Sbjct: 1 MGGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRA 60
Query: 61 GSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIP 120
G S SK+K+GGQ++ET+EIIRN M+YANDQLKAIAEW N+Q QD +R E VRQLQGI
Sbjct: 61 GLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGIL 120
Query: 121 ELSTHDRMHLMQILMCNVNDMKAFFEVLEEL 152
ELS D+ H + +LM NVNDMKA +V +++
Sbjct: 121 ELSRLDKAHCICLLMHNVNDMKASLDVSDDM 151
BLAST of PI0021914 vs. NCBI nr
Match:
KAA0065601.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 160.2 bits (404), Expect = 1.5e-35
Identity = 92/162 (56.79%), Postives = 114/162 (70.37%), Query Frame = 0
Query: 3 ARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGS 62
A +TFVDV SNV YEGFPA+DGN+ EI M+Y SEGR S
Sbjct: 10 ACVETFVDVRSNVFEVYEGFPANDGNDSEIPMIYG----------------HLSEGRNAS 69
Query: 63 SGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPEL 122
S SKRK G QT ET++II NA++Y N QLKAIA+ N+QRQ + ASRAEV+ QLQGIP+L
Sbjct: 70 SRSKRKWGDQTTETVKIICNAIEYTNGQLKAIAKRSNVQRQADDASRAEVMSQLQGIPKL 129
Query: 123 STHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA 165
ST DR+ L+ I+M NV++M+AF EV +ELKLDYCT +LED+A
Sbjct: 130 STRDRVRLLWIIMHNVHNMRAFLEVPDELKLDYCTTMLEDNA 155
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V469 | 1.3e-56 | 71.07 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TZA5 | 7.7e-38 | 53.70 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TYQ6 | 2.2e-37 | 52.47 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3CL79 | 8.5e-37 | 58.94 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VIQ2 | 7.2e-36 | 56.79 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0060529.1 | 2.6e-56 | 71.07 | retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... | [more] |
KAA0048374.1 | 1.6e-37 | 53.70 | retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p... | [more] |
KAA0048280.1 | 4.6e-37 | 52.47 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK11924.1 | 1.8e-36 | 58.94 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0065601.1 | 1.5e-35 | 56.79 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |