PI0021868 (gene) Melon (PI 482460) v1

Overview


Name	PI0021868
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	mediator of RNA polymerase II transcription subunit 15a
Location	chr01: 2190969 .. 2192854 (+)
RNA-Seq Expression	PI0021868
Synteny	PI0021868

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACTGACGCCCTCCTCTTTCTTTGCATGGCTTCCTAAATCGTGTACGTGAGTAACAAGCCTTCGATCATTATCTTCTCTTGTAAATCTTCTAGGTTTCCCCAATTTTCAGATACATCTCTGAATTTGACTCATTGTTTTCCTGTAACCAGCTTTCAAATTAAACAATTGCCGAATCAGTTCTTCCCGATTACCATCTCCGCCGCCAATTTCTGGCCTTCATTCAGCTCAGCCCACTCCTTGCGAATGGATACAAATAGTTGGAGACCTACTCAAAGTGGAATCGAGGCGGGGGATTGAGCTTCCAATTGCACCCCGATTTTCGACAACACGTCAACGAAATGTATGGTTTCCTGCATTTTTCTGGGACGTATGTGTTTGAGCTTTTATAACTTTTACATCTTTTCCCTCTTTTTTTTAGAACGAAGTCATTGAAGAGGCAACTTCTTGTTTCTGATCAAGAAGGATTGAGTGAGCTACGAAAAATTCTCGTAAGGTTTGAGGAAAAGATTTACATCGCCTCTATCAATCAGGTAGTTCTGCTCACTTTGTCATAGTTTAAATCAAGGATTGTCATATATGTTTGTTTCTCAAACACACACACATATTAAAGAAACAAATTTCATTGATATGTAAAATTTGCAAAAAGAGGCCAAAGCATTAGCCAAAGGCGTTATGATAGCGGTCTCCAAGTGGACAAAAGAGACAGATATTAGATAATGATATCAAAATAGCAATCAAAGGAGCTCCCTCTATATTGAAAAGGAGATTGTTTCTTTCCTTCCAAGTAATCAAGCACAAACCAAATGTATCCATATTATCTATCATTTTTTGATTGGTGAAGGGATGACCAGTGAGAGTCTATCAGAGGATGCTGACAATGTTCTTAGGTAAGGCAATGTACCAACCAAAAGAGAAGAAAATCTCCTTCCAAGACCTCTCAACACAAAGTGGCAGTTGATGAGTAGATGGCTACTTAGAATATGTTTATCCCATATTCTAATAACAATAAGATTCCAATTATTTGCTACCTAAGATTTAGTTGTGTAATGCGTACTTCTTTTCTTTTGTTGGGGCTTGATTGTCTTTGTGTCCCCATGTGTATTATTTTCATTTCTCCTACTGAAATCGCATTTTCTTACTCTCTTTCTCTCACTATGTATATATAGTGAGTTTTACATGTGGACTTGCATGTATAAATCTTGTTTTATTATGCTATGTGTTCTTGCACTAAACACAACATTGTTTTAGTGATCTCTTGAGTGTGTACTATGTACTATTACCAATTCTATTTTAATCTCTGATTTCAGTTTGATTACCTAAGGAAAACATTTCTGAAGATCCTTACCATGGAAACCATATCTCAGCCCCCTATGGGGACTTCGTTACCATCCAATCCTGTGGTGCCTAGCAATAAGCCTCTGGATTTTGGTAAGTCATCAATAGACACTTTGCCTCTATGTTGTACATGATAAAAGTTTCACCAACACTTTTTAAGTCAATTTGTGAATGGATTTCTTATGGTAGAGTTTTTTTTTTTAAATTTATTTATTTATTTAAAATTTTCTATTTCTCTGTTCTTGGATATTGTAATCATTTCTCACCTAACATATGACATTTTATTTGACTTGATGTTGTGTATATTGTAAACAGCATTACAAAGCATGAAGCTCCAAGTTCTAAGCCAAGGGCAATCAATTTCTGTTCCTCAGTCACAAAATGTAATGGATCAGCTTCAAGTTGGAAGTCAAGCACCGGGCTCCTTGCTTCAATCACAAAATGTAATGGATCTGCAAAAGCAGTTGCATCATTCTCAAAGAGCTCTTCCAGAGACATCTTCAAGTATGTTTTCTTGCTTTGTTATAATTTTAGAGCCTTATCATTGA

mRNA sequence

AAAACTGACGCCCTCCTCTTTCTTTGCATGGCTTCCTAAATCGTCTTTCAAATTAAACAATTGCCGAATCAGTTCTTCCCGATTACCATCTCCGCCGCCAATTTCTGGCCTTCATTCAGCTCAGCCCACTCCTTGCGAATGGATACAAATAGTTGGAGACCTACTCAAAGTGGAATCGAGGCGGGGGATTGAGCTTCCAATTGCACCCCGATTTTCGACAACACGTCAACGAAATAACGAAGTCATTGAAGAGGCAACTTCTTGTTTCTGATCAAGAAGGATTGAGTGAGCTACGAAAAATTCTCGTAAGGTTTGAGGAAAAGATTTACATCGCCTCTATCAATCAGTTTGATTACCTAAGGAAAACATTTCTGAAGATCCTTACCATGGAAACCATATCTCAGCCCCCTATGGGGACTTCGTTACCATCCAATCCTGTGGTGCCTAGCAATAAGCCTCTGGATTTTGCATTACAAAGCATGAAGCTCCAAGTTCTAAGCCAAGGGCAATCAATTTCTGTTCCTCAGTCACAAAATGTAATGGATCAGCTTCAAGTTGGAAGTCAAGCACCGGGCTCCTTGCTTCAATCACAAAATGTAATGGATCTGCAAAAGCAGTTGCATCATTCTCAAAGAGCTCTTCCAGAGACATCTTCAAAGCCTTATCATTGA

Coding sequence (CDS)

ATGGAAACCATATCTCAGCCCCCTATGGGGACTTCGTTACCATCCAATCCTGTGGTGCCTAGCAATAAGCCTCTGGATTTTGCATTACAAAGCATGAAGCTCCAAGTTCTAAGCCAAGGGCAATCAATTTCTGTTCCTCAGTCACAAAATGTAATGGATCAGCTTCAAGTTGGAAGTCAAGCACCGGGCTCCTTGCTTCAATCACAAAATGTAATGGATCTGCAAAAGCAGTTGCATCATTCTCAAAGAGCTCTTCCAGAGACATCTTCAAAGCCTTATCATTGA

Protein sequence

METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQNVMDQLQVGSQAPGSLLQSQNVMDLQKQLHHSQRALPETSSKPYH

Homology

[Close]

BLAST of PI0021868 vs. ExPASy Swiss-Prot
Match: F4I171 (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.2e-04
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 30  QSMKLQVLSQGQSISVPQSQNVMDQ-----LQVGSQAPGSLLQSQNVMDLQKQLHHSQRA 89
           Q M  Q+ S  Q + + Q  N++ Q     LQ   Q  GSLL  QNV+D Q+QL+ SQR 
Sbjct: 511 QQMMPQLQSHHQQLGLQQQPNLLQQDVQQRLQASGQVTGSLLPPQNVVDQQRQLYQSQRT 570

Query: 90  LPETSS 91
           LPE  S
Sbjct: 571 LPEMPS 576

[Close]

BLAST of PI0021868 vs. ExPASy TrEMBL
Match: A0A6J1HI15 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463831 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.5e-11
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1   METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN 51
           MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQS N
Sbjct: 88  METKSQTPMGTSLPSNPMVPSNKPLDSASQSMQPQVLNQGQSISVPQSSN 137

[Close]

BLAST of PI0021868 vs. ExPASy TrEMBL
Match: A0A6J1HI99 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463831 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.5e-11
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN 51
          MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQS N
Sbjct: 4  METKSQTPMGTSLPSNPMVPSNKPLDSASQSMQPQVLNQGQSISVPQSSN 53

[Close]

BLAST of PI0021868 vs. ExPASy TrEMBL
Match: A0A6J1HVE4 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467027 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN 51
          MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQ  N
Sbjct: 4  METKSQTPMGTSLPSNPMVPSNKPLDSASQSMQPQVLNQGQSISVPQPSN 53

[Close]

BLAST of PI0021868 vs. ExPASy TrEMBL
Match: A0A6J1HR60 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467027 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN 51
           MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQ  N
Sbjct: 88  METKSQTPMGTSLPSNPMVPSNKPLDSASQSMQPQVLNQGQSISVPQPSN 137

[Close]

BLAST of PI0021868 vs. ExPASy TrEMBL
Match: A0A5D3C6P8 (Mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002870 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.2e-08
Identity = 44/96 (45.83%), Postives = 54/96 (56.25%), Query Frame = 0


Query: 6   QPPMGTS-----------LPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQNVMDQ 65
           QPP  TS           L S+  + S  PL       ++ +  Q Q  +   S  +  +
Sbjct: 464 QPPQNTSNLLSTQGQQGQLQSSQQLMSQIPLQSTQVQQQVPLQQQQQQQATAMSHELQQR 523

Query: 66  LQVGSQAPGSLLQSQNVMDLQKQLHHSQRALPETSS 91
           + VG QAPGSLLQSQNVMD QKQL+HSQRALPETSS
Sbjct: 524 IPVGGQAPGSLLQSQNVMDQQKQLYHSQRALPETSS 559

[Close]

BLAST of PI0021868 vs. NCBI nr
Match: XP_022963530.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 77.4 bits (189), Expect = 7.3e-11
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN 51
          MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQS N
Sbjct: 4  METKSQTPMGTSLPSNPMVPSNKPLDSASQSMQPQVLNQGQSISVPQSSN 53

[Close]

BLAST of PI0021868 vs. NCBI nr
Match: KAG6571702.1 (Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.4 bits (189), Expect = 7.3e-11
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1   METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN 51
           MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQS N
Sbjct: 88  METKSQTPMGTSLPSNPMVPSNKPLDSASQSMQPQVLNQGQSISVPQSSN 137

[Close]

BLAST of PI0021868 vs. NCBI nr
Match: XP_022963528.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 77.4 bits (189), Expect = 7.3e-11
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1   METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN 51
           MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQS N
Sbjct: 88  METKSQTPMGTSLPSNPMVPSNKPLDSASQSMQPQVLNQGQSISVPQSSN 137

[Close]

BLAST of PI0021868 vs. NCBI nr
Match: XP_023553730.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.4 bits (189), Expect = 7.3e-11
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1   METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN 51
           MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQS N
Sbjct: 88  METKSQTPMGTSLPSNPMVPSNKPLDSASQSMQPQVLNQGQSISVPQSSN 137

[Close]

BLAST of PI0021868 vs. NCBI nr
Match: KAG7011427.1 (Mediator of RNA polymerase II transcription subunit 15a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.4 bits (189), Expect = 7.3e-11
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1   METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN 51
           MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQS N
Sbjct: 88  METKSQTPMGTSLPSNPMVPSNKPLDSASQSMQPQVLNQGQSISVPQSSN 137

[Close]

BLAST of PI0021868 vs. TAIR 10
Match: AT1G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.7e-05
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 30  QSMKLQVLSQGQSISVPQSQNVMDQ-----LQVGSQAPGSLLQSQNVMDLQKQLHHSQRA 89
           Q M  Q+ S  Q + + Q  N++ Q     LQ   Q  GSLL  QNV+D Q+QL+ SQR 
Sbjct: 511 QQMMPQLQSHHQQLGLQQQPNLLQQDVQQRLQASGQVTGSLLPPQNVVDQQRQLYQSQRT 570

Query: 90  LPETSS 91
           LPE  S
Sbjct: 571 LPEMPS 576

The following BLAST results are available for this feature:

BLAST of PI0021868 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I171	5.2e-04	43.94	Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ...	[more]

BLAST of PI0021868 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HI15	3.5e-11	82.00	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur...	[more]
A0A6J1HI99	3.5e-11	82.00	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucur...	[more]
A0A6J1HVE4	1.3e-10	80.00	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucur...	[more]
A0A6J1HR60	1.3e-10	80.00	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur...	[more]
A0A5D3C6P8	6.2e-08	45.83	Mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo var. mak...	[more]

BLAST of PI0021868 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963530.1	7.3e-11	82.00	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbi...	[more]
KAG6571702.1	7.3e-11	82.00	Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argy...	[more]
XP_022963528.1	7.3e-11	82.00	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi...	[more]
XP_023553730.1	7.3e-11	82.00	mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo sub...	[more]
KAG7011427.1	7.3e-11	82.00	Mediator of RNA polymerase II transcription subunit 15a [Cucurbita argyrosperma ...	[more]

BLAST of PI0021868 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15780.1	3.7e-05	43.94	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021868.1	PI0021868.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0003713	transcription coactivator activity