Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGAAGAGAATAGCAACAATAATTTTTCTAATCAAGAACCTTTAGGAGATTTAGAACCTAACCTAGATCCTCCTTTAGTTCCAAACCTTGGTAGAGGAAATATGGGTGAAGTTAGAGAAAAGACCCTTAGAGAGCTTGTCGAACCCGATGAAGACCAAAGACCACTTTGTATAGTCATACCCCCTACTACTCAACCTTTTGAATTAGAACCCGGACTTATCCACCTTTTGCCAATCTATAAAGGAAGTTCCGGAGAGGACCCACGGCATCTCGGAAGAGCAACTAAATTTACGAGCCTTACCTTTTTTCCTTACGAACGTATCAAAGAGATGGCTCTACTACTTAGAACCGGGTCCTATAACCACTTGGGGTAGTCTAAAAAAGAAGTTCTTAGAGAAATTTTTTTCCGCCTCTAGAGCCAACAATATTAGGAAAGAAATATATGGGATAAGACAAGCCTTTGGAGAATCCCTCTCTGAATATTGGGAAAGATTCAAAGAGTTATGTGCTAGTTTTCCTCACCACCACATCTCCGACCCTTCTTTGATTCAATATTTTTATTCCGGTCTTTTGGCTTCCGATAGAATCACAGTTGATGCGGTGGCGGGAGGAGCTCTAGCCGACAAAACTCCCATCAAAGCAAGAGAACTCATCTCTAGAATGGCAGAGAACTCTTAAAGTTTTGGGAATGGAGCGTCAGAACTTGACAACTCTCTAACAAAAGCGGGAAGTGAATTGAAATCTCAAATGTTAAATATGACAACTCTTCTTACTTCTTTTGTGCAAGGGGGTCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCCAATGATAAATGCCCCGCCTTGATTGAGGACGTTAATGTCATTCGTAAATACGATCCCCACGGTAATACATACAATTCGGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACGACCAAACGCCCACCCAAGAAACATCCTCCTCTTTAAACCAAGGTATGAATCTTGAAGACATAGTCAAAGCTTTAGCTACTAATACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTCACTACTGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCGGCCCAACCGGACCATGCAAATGTGAGTGTCATCTCACTAAGAAGTGGTAAGATTCTTGAAACCCCTTCTAGTGAAGAAAAAAAGGTAACTCCCAATCCTATCCTTCTTGAAAATGAAAGTGAGTCTAAGGAAGATAAAGTTGAAACAAGCTCCTTACCGTCTAATTCTAAAAAAGGTAAAACTCCTCTTAATGATTTTACTCCTTATGTACCTAAAGCTCCTTTTCCTTCTAGGTTGGCTTCAAAGAAGAAAGAAACACCCAAGGAGGAAGAACTTTTGGAGATGTTTAGAAAAGTGCAAATCAACTTGCCCCTACTAGATGCAATCCAACAAATGCCAAGGTATGCAAAGTTTCTAAAGGAGTTGTGCACCAACAAGAGGAAAACTAAAGAAAAACCCATGGTAAGTCACAATGTTTCAGTCCTTTTAAAGAATAATATTCCGGAAAAATGCAATGATCCCAGTATGTTTTCTCTTCCTTGCATAATAGGCAATAGACTAATTTCTCATGCAATGCTTGACTTAGGAGCATCCATAAATGTCATGCCATATAGTGTTTTCAAAGATCTAGAACTTAATAACTTGCAAAAAACTAGTGTATGCATACAACTAGCGGATAGATCTTTTATTTCACCGTTAGGAATAGTTGAAGATGTACTTGTTAAAATTGATAAATTAATTTTTCCGGCGGATTTTTACTTATTAGAAATGAATGAAGCATGCCTTAAACTATCTCACTCAATTTTATTAGGAAGGTCTTTTCTTAAAACCGCAAAAGCAATAATAAATGTTGATAAAGGCTCCTTAAGTGTAGAATTTGATGGAGACATGGTTACATTTAATATTTTCGAATCTATGAAATATCCGGATGAATGCCTATCTTTATGCTCAATAGAATTGCATGATGAAATTGAAGAAATGTCTATACATGATGAATTTTTTAGTTAAGAATTAGTTGAAAATAAAGAATTAGTAGAACCTAATTTTGATTATGCCTTAGAGAAAAATAATTGTGATAATCTTTTCTTTTCTCCACAGGAACATGGGATTGA
mRNA sequence
ATGAGAGAAGAGAATAGCAACAATAATTTTTCTAATCAAGAACCTTTAGGAGATTTAGAACCTAACCTAGATCCTCCTTTAGTTCCAAACCTTGGTAGAGGAAATATGGGTGAAGTTAGAGAAAAGACCCTTAGAGAGCTTGTCGAACCCGATGAAGACCAAAGACCACTTTGGGGTCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCCAATGATAAATGCCCCGCCTTGATTGAGGACGTTAATGTCATTCGTAAATACGATCCCCACGGTAATACATACAATTCGGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACGACCAAACGCCCACCCAAGAAACATCCTCCTCTTTAAACCAAGGTATGAATCTTGAAGACATAGTCAAAGCTTTAGCTACTAATACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTCACTACTGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCGGCCCAACCGGACCATGCAAATGTGAGTGTCATCTCACTAAGAAGTGGTAAGATTCTTGAAACCCCTTCTAGTGAAGAAAAAAAGGTAACTCCCAATCCTATCCTTCTTGAAAATGAAAGTGAGTCTAAGGAAGATAAAGTTGAAACAAGCTCCTTACCGTCTAATTCTAAAAAAGGAACATGGGATTGA
Coding sequence (CDS)
ATGAGAGAAGAGAATAGCAACAATAATTTTTCTAATCAAGAACCTTTAGGAGATTTAGAACCTAACCTAGATCCTCCTTTAGTTCCAAACCTTGGTAGAGGAAATATGGGTGAAGTTAGAGAAAAGACCCTTAGAGAGCTTGTCGAACCCGATGAAGACCAAAGACCACTTTGGGGTCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCCAATGATAAATGCCCCGCCTTGATTGAGGACGTTAATGTCATTCGTAAATACGATCCCCACGGTAATACATACAATTCGGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACGACCAAACGCCCACCCAAGAAACATCCTCCTCTTTAAACCAAGGTATGAATCTTGAAGACATAGTCAAAGCTTTAGCTACTAATACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTCACTACTGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCGGCCCAACCGGACCATGCAAATGTGAGTGTCATCTCACTAAGAAGTGGTAAGATTCTTGAAACCCCTTCTAGTGAAGAAAAAAAGGTAACTCCCAATCCTATCCTTCTTGAAAATGAAAGTGAGTCTAAGGAAGATAAAGTTGAAACAAGCTCCTTACCGTCTAATTCTAAAAAAGGAACATGGGATTGA
Protein sequence
MREENSNNNFSNQEPLGDLEPNLDPPLVPNLGRGNMGEVREKTLRELVEPDEDQRPLWGPLKVAKCGVCGLVGHPNDKCPALIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDDQTPTQETSSSLNQGMNLEDIVKALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSVISLRSGKILETPSSEEKKVTPNPILLENESESKEDKVETSSLPSNSKKGTWD
Homology
BLAST of PI0021271 vs. ExPASy TrEMBL
Match:
A0A5D3DS57 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002030 PE=4 SV=1)
HSP 1 Score: 318.9 bits (816), Expect = 1.7e-83
Identity = 177/306 (57.84%), Postives = 200/306 (65.36%), Query Frame = 0
Query: 1 MREENSNNNFSNQEPLGDLEPNLDPPLVPNLGRGNMGEVREKTLRELVEPDEDQRPL--- 60
MREENS N SNQEPL LEP+LD PL PNLGRGNMGEVREKTLREL EPDEDQRPL
Sbjct: 1 MREENSIPNLSNQEPLRGLEPSLDSPLDPNLGRGNMGEVREKTLRELAEPDEDQRPLCIV 60
Query: 61 ------------------------------------------------------------ 120
Sbjct: 61 IPPTTQPFELKPGLIHLLPIFKGSSREDPYKHLKDFHMVCDSMRPHDISKEQLNLRAFPF 120
Query: 121 --------W-------GPLKVAKCGVCGLVGHPNDKCPALIEDVNVIRKYDPHGNTYNSG 180
W PLKV KCGVCGLVGHPNDKC +IEDVN++R+Y+PHGNTYNS
Sbjct: 121 SLTDVAKRWLYYLEPGTPLKVTKCGVCGLVGHPNDKCLEVIEDVNIVRRYEPHGNTYNSE 180
Query: 181 WRDNPNLRWGNDDQTPTQETSSSLNQGMNLEDIVKALATNTLSFQQEMKQQMTQLTTAIS 229
WR+ PNLRWGND+Q TQ +S NQG NLEDI+KALATNT+SFQQEMKQQMTQLTTAIS
Sbjct: 181 WREKPNLRWGNDNQKHTQALFTSSNQGTNLEDIIKALATNTVSFQQEMKQQMTQLTTAIS 240
BLAST of PI0021271 vs. ExPASy TrEMBL
Match:
A0A5A7V594 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001880 PE=4 SV=1)
HSP 1 Score: 317.4 bits (812), Expect = 5.0e-83
Identity = 177/306 (57.84%), Postives = 199/306 (65.03%), Query Frame = 0
Query: 1 MREENSNNNFSNQEPLGDLEPNLDPPLVPNLGRGNMGEVREKTLRELVEPDEDQRPL--- 60
MREENS N SNQEPL LEP LD PL PNLGRGNMGEVREKTLREL EPDEDQRPL
Sbjct: 1 MREENSIPNLSNQEPLRGLEPILDSPLDPNLGRGNMGEVREKTLRELAEPDEDQRPLCIV 60
Query: 61 ------------------------------------------------------------ 120
Sbjct: 61 IPPTTQPFELKPGLIHLLPIFKGSSREDPYKHLKDFHMVCDSMRPHDISKEQLNLRAFPF 120
Query: 121 --------W-------GPLKVAKCGVCGLVGHPNDKCPALIEDVNVIRKYDPHGNTYNSG 180
W PLKV KCGVCGLVGHPNDKC +IEDVN++R+Y+PHGNTYNS
Sbjct: 121 SLTDVAKRWLYYLEPGTPLKVTKCGVCGLVGHPNDKCLEVIEDVNIVRRYEPHGNTYNSE 180
Query: 181 WRDNPNLRWGNDDQTPTQETSSSLNQGMNLEDIVKALATNTLSFQQEMKQQMTQLTTAIS 229
WR+ PNLRWGND+Q TQ +S NQG NLEDI+KALATNT+SFQQEMKQQMTQLTTAIS
Sbjct: 181 WREKPNLRWGNDNQKHTQALFTSSNQGTNLEDIIKALATNTVSFQQEMKQQMTQLTTAIS 240
BLAST of PI0021271 vs. ExPASy TrEMBL
Match:
A0A5A7V668 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6213G00110 PE=4 SV=1)
HSP 1 Score: 314.3 bits (804), Expect = 4.2e-82
Identity = 172/291 (59.11%), Postives = 195/291 (67.01%), Query Frame = 0
Query: 2 REENSNNNFSNQEPLGDLEPNLDPPLVPNLGRGNMGEVREKTLRELVEPDEDQRPLWG-- 61
+EENS N SNQEPL LEP+LD PL PNL R NMGEVREKTL+EL EP+EDQRPL+
Sbjct: 27 KEENSIPNLSNQEPLRGLEPSLDSPLDPNLVRENMGEVREKTLQELAEPNEDQRPLYAAA 86
Query: 62 ------------------------------------------------------------ 121
Sbjct: 87 GGALADKTPTGARELISRMAENSQSFGNKASELDNSLIKEVSELKSQMLNMTTLLTSFVL 146
Query: 122 --PLKVAKCGVCGLVGHPNDKCPALIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDDQT 181
PLKV KCGVCGLVGH NDKCP +IEDVN++R+YDPHGNTYNSGWRDNPNLRWGND+Q
Sbjct: 147 GTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWRDNPNLRWGNDNQK 206
Query: 182 PTQETSSSLNQGMNLEDIVKALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHA 229
T S+S QG NLEDI+KALATNTLSFQQEMKQQMTQLTT SK++GKGKL AQP HA
Sbjct: 207 HTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKMDGKGKLSAQPGHA 266
BLAST of PI0021271 vs. ExPASy TrEMBL
Match:
A0A5A7VQ60 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1704G00030 PE=4 SV=1)
HSP 1 Score: 288.1 bits (736), Expect = 3.3e-74
Identity = 174/362 (48.07%), Postives = 197/362 (54.42%), Query Frame = 0
Query: 2 REENSNNNFSNQEPLGDLEPNLDPPLVPNLGRGNMGEVREKTLRELVEPDEDQRPL---- 61
REENS + SNQEPL LEP+LD PL PNLGRGNM EVREKTLREL E DE+QRPL
Sbjct: 27 REENSIPSLSNQEPLRGLEPSLDSPLDPNLGRGNMSEVREKTLRELAELDENQRPLCIVI 86
Query: 62 ------------------------------------------------------------ 121
Sbjct: 87 PPTTQPFELKPGLIHLLPIFKGSPGEDPHKHLKDFHMVFDSMRPHGISEEQLNLRAFLFP 146
Query: 122 ------------------------------------------------------------ 181
Sbjct: 147 LRMNTVDAAVGRALADKTPTEARELISRMAKNFQSFGNRASEFDNSLTKEVSELKSQMLN 206
Query: 182 -----------WGPLKVAKCGVCGLVGHPNDKCPALIEDVNVIRKYDPHGNTYNSGWRDN 229
PLKV KCGVCGLVGH N+KCP +IEDVN++R+YDPH NTYNSGWRDN
Sbjct: 207 MTTTLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIEDVNIVRRYDPHSNTYNSGWRDN 266
BLAST of PI0021271 vs. ExPASy TrEMBL
Match:
A0A5D3C1D3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00200 PE=4 SV=1)
HSP 1 Score: 286.6 bits (732), Expect = 9.5e-74
Identity = 170/348 (48.85%), Postives = 196/348 (56.32%), Query Frame = 0
Query: 1 MREENSNNNFSNQEPLGDLEPNLDPPLVPNLGRGNMGEVREKTLRELVEPDEDQRPL--- 60
MREEN+ N NQ+PL LEP+LD PL PNLGRGNMGEVREK LRELVEPDEDQRPL
Sbjct: 1 MREENNILNLYNQQPLRGLEPSLDSPLDPNLGRGNMGEVREKNLRELVEPDEDQRPLCII 60
Query: 61 -----------------------------------------------------------W 120
+
Sbjct: 61 IPPTTQPFELKSGLIHLLPIFKGSFGEDPHKHHKDFYMVCDSMRLHGISKEQLNLRAFPF 120
Query: 121 GPLKVAK----------------------------------------------------- 180
+ VAK
Sbjct: 121 SLMDVAKRWLYYLEPGSITTWDAAAGGALADKTPIEARELISRMTEISQSFGNRASELDN 180
Query: 181 -----CGVCGLVGHPNDKCPALIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDDQTPTQ 229
CGVCGLVGHPNDKCP +I DVN+++KYDPHGNTYNSGWRDNPNLRWGND+Q TQ
Sbjct: 181 SLTKVCGVCGLVGHPNDKCPEVISDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQKHTQ 240
BLAST of PI0021271 vs. NCBI nr
Match:
TYK26581.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 318.9 bits (816), Expect = 3.6e-83
Identity = 177/306 (57.84%), Postives = 200/306 (65.36%), Query Frame = 0
Query: 1 MREENSNNNFSNQEPLGDLEPNLDPPLVPNLGRGNMGEVREKTLRELVEPDEDQRPL--- 60
MREENS N SNQEPL LEP+LD PL PNLGRGNMGEVREKTLREL EPDEDQRPL
Sbjct: 1 MREENSIPNLSNQEPLRGLEPSLDSPLDPNLGRGNMGEVREKTLRELAEPDEDQRPLCIV 60
Query: 61 ------------------------------------------------------------ 120
Sbjct: 61 IPPTTQPFELKPGLIHLLPIFKGSSREDPYKHLKDFHMVCDSMRPHDISKEQLNLRAFPF 120
Query: 121 --------W-------GPLKVAKCGVCGLVGHPNDKCPALIEDVNVIRKYDPHGNTYNSG 180
W PLKV KCGVCGLVGHPNDKC +IEDVN++R+Y+PHGNTYNS
Sbjct: 121 SLTDVAKRWLYYLEPGTPLKVTKCGVCGLVGHPNDKCLEVIEDVNIVRRYEPHGNTYNSE 180
Query: 181 WRDNPNLRWGNDDQTPTQETSSSLNQGMNLEDIVKALATNTLSFQQEMKQQMTQLTTAIS 229
WR+ PNLRWGND+Q TQ +S NQG NLEDI+KALATNT+SFQQEMKQQMTQLTTAIS
Sbjct: 181 WREKPNLRWGNDNQKHTQALFTSSNQGTNLEDIIKALATNTVSFQQEMKQQMTQLTTAIS 240
BLAST of PI0021271 vs. NCBI nr
Match:
KAA0062400.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 317.4 bits (812), Expect = 1.0e-82
Identity = 177/306 (57.84%), Postives = 199/306 (65.03%), Query Frame = 0
Query: 1 MREENSNNNFSNQEPLGDLEPNLDPPLVPNLGRGNMGEVREKTLRELVEPDEDQRPL--- 60
MREENS N SNQEPL LEP LD PL PNLGRGNMGEVREKTLREL EPDEDQRPL
Sbjct: 1 MREENSIPNLSNQEPLRGLEPILDSPLDPNLGRGNMGEVREKTLRELAEPDEDQRPLCIV 60
Query: 61 ------------------------------------------------------------ 120
Sbjct: 61 IPPTTQPFELKPGLIHLLPIFKGSSREDPYKHLKDFHMVCDSMRPHDISKEQLNLRAFPF 120
Query: 121 --------W-------GPLKVAKCGVCGLVGHPNDKCPALIEDVNVIRKYDPHGNTYNSG 180
W PLKV KCGVCGLVGHPNDKC +IEDVN++R+Y+PHGNTYNS
Sbjct: 121 SLTDVAKRWLYYLEPGTPLKVTKCGVCGLVGHPNDKCLEVIEDVNIVRRYEPHGNTYNSE 180
Query: 181 WRDNPNLRWGNDDQTPTQETSSSLNQGMNLEDIVKALATNTLSFQQEMKQQMTQLTTAIS 229
WR+ PNLRWGND+Q TQ +S NQG NLEDI+KALATNT+SFQQEMKQQMTQLTTAIS
Sbjct: 181 WREKPNLRWGNDNQKHTQALFTSSNQGTNLEDIIKALATNTVSFQQEMKQQMTQLTTAIS 240
BLAST of PI0021271 vs. NCBI nr
Match:
KAA0061315.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 314.3 bits (804), Expect = 8.8e-82
Identity = 172/291 (59.11%), Postives = 195/291 (67.01%), Query Frame = 0
Query: 2 REENSNNNFSNQEPLGDLEPNLDPPLVPNLGRGNMGEVREKTLRELVEPDEDQRPLWG-- 61
+EENS N SNQEPL LEP+LD PL PNL R NMGEVREKTL+EL EP+EDQRPL+
Sbjct: 27 KEENSIPNLSNQEPLRGLEPSLDSPLDPNLVRENMGEVREKTLQELAEPNEDQRPLYAAA 86
Query: 62 ------------------------------------------------------------ 121
Sbjct: 87 GGALADKTPTGARELISRMAENSQSFGNKASELDNSLIKEVSELKSQMLNMTTLLTSFVL 146
Query: 122 --PLKVAKCGVCGLVGHPNDKCPALIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDDQT 181
PLKV KCGVCGLVGH NDKCP +IEDVN++R+YDPHGNTYNSGWRDNPNLRWGND+Q
Sbjct: 147 GTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWRDNPNLRWGNDNQK 206
Query: 182 PTQETSSSLNQGMNLEDIVKALATNTLSFQQEMKQQMTQLTTAISKLEGKGKLPAQPDHA 229
T S+S QG NLEDI+KALATNTLSFQQEMKQQMTQLTT SK++GKGKL AQP HA
Sbjct: 207 HTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKMDGKGKLSAQPGHA 266
BLAST of PI0021271 vs. NCBI nr
Match:
KAA0067359.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 288.1 bits (736), Expect = 6.7e-74
Identity = 174/362 (48.07%), Postives = 197/362 (54.42%), Query Frame = 0
Query: 2 REENSNNNFSNQEPLGDLEPNLDPPLVPNLGRGNMGEVREKTLRELVEPDEDQRPL---- 61
REENS + SNQEPL LEP+LD PL PNLGRGNM EVREKTLREL E DE+QRPL
Sbjct: 27 REENSIPSLSNQEPLRGLEPSLDSPLDPNLGRGNMSEVREKTLRELAELDENQRPLCIVI 86
Query: 62 ------------------------------------------------------------ 121
Sbjct: 87 PPTTQPFELKPGLIHLLPIFKGSPGEDPHKHLKDFHMVFDSMRPHGISEEQLNLRAFLFP 146
Query: 122 ------------------------------------------------------------ 181
Sbjct: 147 LRMNTVDAAVGRALADKTPTEARELISRMAKNFQSFGNRASEFDNSLTKEVSELKSQMLN 206
Query: 182 -----------WGPLKVAKCGVCGLVGHPNDKCPALIEDVNVIRKYDPHGNTYNSGWRDN 229
PLKV KCGVCGLVGH N+KCP +IEDVN++R+YDPH NTYNSGWRDN
Sbjct: 207 MTTTLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIEDVNIVRRYDPHSNTYNSGWRDN 266
BLAST of PI0021271 vs. NCBI nr
Match:
TYK04216.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 286.6 bits (732), Expect = 2.0e-73
Identity = 170/348 (48.85%), Postives = 196/348 (56.32%), Query Frame = 0
Query: 1 MREENSNNNFSNQEPLGDLEPNLDPPLVPNLGRGNMGEVREKTLRELVEPDEDQRPL--- 60
MREEN+ N NQ+PL LEP+LD PL PNLGRGNMGEVREK LRELVEPDEDQRPL
Sbjct: 1 MREENNILNLYNQQPLRGLEPSLDSPLDPNLGRGNMGEVREKNLRELVEPDEDQRPLCII 60
Query: 61 -----------------------------------------------------------W 120
+
Sbjct: 61 IPPTTQPFELKSGLIHLLPIFKGSFGEDPHKHHKDFYMVCDSMRLHGISKEQLNLRAFPF 120
Query: 121 GPLKVAK----------------------------------------------------- 180
+ VAK
Sbjct: 121 SLMDVAKRWLYYLEPGSITTWDAAAGGALADKTPIEARELISRMTEISQSFGNRASELDN 180
Query: 181 -----CGVCGLVGHPNDKCPALIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDDQTPTQ 229
CGVCGLVGHPNDKCP +I DVN+++KYDPHGNTYNSGWRDNPNLRWGND+Q TQ
Sbjct: 181 SLTKVCGVCGLVGHPNDKCPEVISDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQKHTQ 240
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DS57 | 1.7e-83 | 57.84 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5A7V594 | 5.0e-83 | 57.84 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5A7V668 | 4.2e-82 | 59.11 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5A7VQ60 | 3.3e-74 | 48.07 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5D3C1D3 | 9.5e-74 | 48.85 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
Match Name | E-value | Identity | Description | |
TYK26581.1 | 3.6e-83 | 57.84 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0062400.1 | 1.0e-82 | 57.84 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0061315.1 | 8.8e-82 | 59.11 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0067359.1 | 6.7e-74 | 48.07 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotranspos... | [more] |
TYK04216.1 | 2.0e-73 | 48.85 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |