PI0021202 (gene) Melon (PI 482460) v1

Overview


Name	PI0021202
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	histone deacetylase complex subunit SAP18-like
Location	chr06: 27961240 .. 27962540 (+)
RNA-Seq Expression	PI0021202
Synteny	PI0021202

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAGAGAAGCAGAGATGAGAAGACGAGCGGAGCTGCAACTGCTCCGCCGCAAGGGAGACCGTCGGGGCGGCCACTCCCTCCGCCGTCTCAAACCAAAGCTCCGCCGCCTCCTCCTCGTCCTCGTTTCGAACCCGTCGACCGCGAAAAGGTTTCTCTTAGGGTTTCCTGCTTCCGCTCCTATTTTTATTTACATCACTCAGATAAGTTTATGGTTTTTGAAATCTAGGTTCGTTATTTCAACTGACACTTCTCTTCTTTTTGTTTCTTGCAATTATGACGATTTCAAGACTTGCCCTTTGTTGCTTCGCGTTTTTACTAAGGTATGTTTGAATTCATTGAGAAGCTTTCTTGTTAAATTTAATCTTTGTTCTTCTGAAAATTGAGAGAATGAGTTATCTGTTTGACATTATTGACTTGCCATTACCTTTGATGATACTTGTCTTTAATCAGTATGGCAGTTTCTTTTGTTGTATGAAGATTGTTATGGAGGTTTTCTTGTTGCCCCCATGTTTTTCTTTTCTTGATTGGTGCACTTGGGAGAACTTTGTTATCGAATTTGAGTGGGGTTCATCTTTCCACGTAGTATCATCTTCTTGCATTAGTATACTGCATACAAAATGTGATTCATTTACATATTTTTTTCAGGCTGGAGGTCATCATACTGATGAGGATTTTGCAATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTGACCGATCTAGTATGCTGAAAACCTACATTCATTTGTTTCTTCTTCTAGTGTTTTTCTATCTATTCTTGCTGTTGTTGTACTGTATTTGACAAACGGTCATCTAATTTTAGGTTAAGGAGGTTGCTCCAGAGGCAAGAAGAAGAAATGCCAAGCTTTCTTTTGCTTTTGTTTATCCCGACAAGCGTGGTCGATTTGTTTTGAAACAGGTTAGTGAAATGGAATGGAATTTAAATTATACATTCTCATTTACAATTGTACTAAATGCTTAGTTGTTTACTTTTTAAGTGCACTACTTGTTTGGATAAATTGTTATCTTTTTCTTAATATGAAAACGATATACTCATTCTTAAGGTGGGGATGACACATTCTTATGGAAATGGGAGGAGATTAGACGATAGCAAGGCATTGGGCGAATTGGACTTCCAGGTAAAATTAGGGTTTATGAATTAAGTTATTTGGAAGTTTATGAGGAAACTAATATATCTTCTGCATGTGTTTTTAACTTTAAAAATGTAGATTGGAGACTATTTGGACGTTGCAATCCTGTAG

mRNA sequence

ATGGACAAGAGAAGCAGAGATGAGAAGACGAGCGGAGCTGCAACTGCTCCGCCGCAAGGGAGACCGTCGGGGCGGCCACTCCCTCCGCCGTCTCAAACCAAAGCTCCGCCGCCTCCTCCTCGTCCTCGTTTCGAACCCGTCGACCGCGAAAAGACTTGCCCTTTGTTGCTTCGCGTTTTTACTAAGGCTGGAGGTCATCATACTGATGAGGATTTTGCAATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTGACCGATCTAGTTAAGGAGGTTGCTCCAGAGGCAAGAAGAAGAAATGCCAAGCTTTCTTTTGCTTTTGTTTATCCCGACAAGCGTGGTCGATTTGTTTTGAAACAGGTGGGGATGACACATTCTTATGGAAATGGGAGGAGATTAGACGATAGCAAGGCATTGGGCGAATTGGACTTCCAGATTGGAGACTATTTGGACGTTGCAATCCTGTAG

Coding sequence (CDS)

ATGGACAAGAGAAGCAGAGATGAGAAGACGAGCGGAGCTGCAACTGCTCCGCCGCAAGGGAGACCGTCGGGGCGGCCACTCCCTCCGCCGTCTCAAACCAAAGCTCCGCCGCCTCCTCCTCGTCCTCGTTTCGAACCCGTCGACCGCGAAAAGACTTGCCCTTTGTTGCTTCGCGTTTTTACTAAGGCTGGAGGTCATCATACTGATGAGGATTTTGCAATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTGACCGATCTAGTTAAGGAGGTTGCTCCAGAGGCAAGAAGAAGAAATGCCAAGCTTTCTTTTGCTTTTGTTTATCCCGACAAGCGTGGTCGATTTGTTTTGAAACAGGTGGGGATGACACATTCTTATGGAAATGGGAGGAGATTAGACGATAGCAAGGCATTGGGCGAATTGGACTTCCAGATTGGAGACTATTTGGACGTTGCAATCCTGTAG

Protein sequence

MDKRSRDEKTSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKTCPLLLRVFTKAGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL

Homology

[Close]

BLAST of PI0021202 vs. ExPASy Swiss-Prot
Match: O64644 (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.5e-51
Identity = 106/153 (69.28%), Postives = 124/153 (81.05%), Query Frame = 0


Query: 13  AATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKTCPLLLRVFTKAGGHHTDEDF 72
           A  A  QG   GRPLPPP +      PPRP+ EPVDREKTCPLLLRVFTK+GGHHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPR-GVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G + +++V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREV 121

Query: 133 GMTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 166
           G T +Y N ++ DDSK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]

BLAST of PI0021202 vs. ExPASy Swiss-Prot
Match: Q3T022 (Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.4e-29
Identity = 68/122 (55.74%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 45  EPVDREKTCPLLLRVFTKAGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVA 104
           +P+DREKTCPLLLRVFT   G H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 105 PEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDV 164
           PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQIGDYLD+
Sbjct: 78  PEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLDI 137

Query: 165 AI 166
           AI
Sbjct: 138 AI 137

[Close]

BLAST of PI0021202 vs. ExPASy Swiss-Prot
Match: O00422 (Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.4e-29
Identity = 68/122 (55.74%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 45  EPVDREKTCPLLLRVFTKAGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVA 104
           +P+DREKTCPLLLRVFT   G H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 105 PEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDV 164
           PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQIGDYLD+
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLDI 137

Query: 165 AI 166
           AI
Sbjct: 138 AI 137

[Close]

BLAST of PI0021202 vs. ExPASy Swiss-Prot
Match: Q5RDT5 (Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.4e-29
Identity = 68/122 (55.74%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 45  EPVDREKTCPLLLRVFTKAGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVA 104
           +P+DREKTCPLLLRVFT   G H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 105 PEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDV 164
           PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQIGDYLD+
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLDI 137

Query: 165 AI 166
           AI
Sbjct: 138 AI 137

[Close]

BLAST of PI0021202 vs. ExPASy Swiss-Prot
Match: O55128 (Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.3e-29
Identity = 68/122 (55.74%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 45  EPVDREKTCPLLLRVFTKAGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVA 104
           +P+DREKTCPLLLRVFT   G H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 105 PEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDV 164
           PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQIGDYLD+
Sbjct: 78  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLDI 137

Query: 165 AI 166
           AI
Sbjct: 138 AI 137

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BLAST of PI0021202 vs. ExPASy TrEMBL
Match: A0A0A0L751 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038150 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.0e-85
Identity = 162/166 (97.59%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEKTSGAATAP QGRPSGRPLPPPSQTKAPPP PRPRFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKAGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TK GGHHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 167
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of PI0021202 vs. ExPASy TrEMBL
Match: A0A5D3D7E1 (Histone deacetylase complex subunit SAP18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001050 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.4e-84
Identity = 162/166 (97.59%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEKTSGAA AP QGRPSGRPLPPPSQTKAPPP PRPRFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKAGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TK GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 167
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of PI0021202 vs. ExPASy TrEMBL
Match: A0A6J1DES5 (histone deacetylase complex subunit SAP18-like OS=Momordica charantia OX=3673 GN=LOC111020386 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.4e-84
Identity = 161/166 (96.99%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAATAPPQGRPS RPLPPPSQ KAPPPPPRPRFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKAGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TK GGHH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 167
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of PI0021202 vs. ExPASy TrEMBL
Match: A0A1S3BLT9 (histone deacetylase complex subunit SAP18-like OS=Cucumis melo OX=3656 GN=LOC103490959 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.4e-84
Identity = 162/166 (97.59%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEKTSGAA AP QGRPSGRPLPPPSQTKAPPP PRPRFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKAGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TK GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 167
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of PI0021202 vs. ExPASy TrEMBL
Match: A0A6J1KTJ0 (histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LOC111498523 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.4e-81
Identity = 156/166 (93.98%), Postives = 157/166 (94.58%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAATAPPQGRPS RPLPPPSQ KAPPPPPR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60

Query: 61  TKAGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TK G HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 167
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 166

[Close]

BLAST of PI0021202 vs. NCBI nr
Match: XP_004147963.1 (histone deacetylase complex subunit SAP18 [Cucumis sativus] >KGN55941.1 hypothetical protein Csa_009634 [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 1.0e-84
Identity = 162/166 (97.59%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEKTSGAATAP QGRPSGRPLPPPSQTKAPPP PRPRFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKAGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TK GGHHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 167
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of PI0021202 vs. NCBI nr
Match: XP_022152730.1 (histone deacetylase complex subunit SAP18-like [Momordica charantia])

HSP 1 Score: 322.0 bits (824), Expect = 3.0e-84
Identity = 161/166 (96.99%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAATAPPQGRPS RPLPPPSQ KAPPPPPRPRFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKAGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TK GGHH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 167
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of PI0021202 vs. NCBI nr
Match: XP_008448944.1 (PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo] >TYK19452.1 histone deacetylase complex subunit SAP18-like [Cucumis melo var. makuwa])

HSP 1 Score: 322.0 bits (824), Expect = 3.0e-84
Identity = 162/166 (97.59%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEKTSGAA AP QGRPSGRPLPPPSQTKAPPP PRPRFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKAGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TK GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 167
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of PI0021202 vs. NCBI nr
Match: XP_038905116.1 (histone deacetylase complex subunit SAP18-like [Benincasa hispida])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 159/166 (95.78%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAATAP QGRPSGRPLPPP   KAPPPPPRPRFEPVDREKTCPLLLRVF
Sbjct: 17  MDKRSRDEKMSGAATAPSQGRPSGRPLPPP---KAPPPPPRPRFEPVDREKTCPLLLRVF 76

Query: 61  TKAGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TK GGHHTD+DFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 77  TKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 136

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 167
           PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 137 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 179

[Close]

BLAST of PI0021202 vs. NCBI nr
Match: XP_022946300.1 (histone deacetylase complex subunit SAP18-like [Cucurbita moschata] >XP_023005582.1 histone deacetylase complex subunit SAP18-like [Cucurbita maxima] >XP_023539983.1 histone deacetylase complex subunit SAP18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.5 bits (794), Expect = 9.0e-81
Identity = 156/166 (93.98%), Postives = 157/166 (94.58%), Query Frame = 0


Query: 1   MDKRSRDEKTSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAATAPPQGRPS RPLPPPSQ KAPPPPPR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60

Query: 61  TKAGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TK G HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 167
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 166

[Close]

BLAST of PI0021202 vs. TAIR 10
Match: AT2G45640.1 (SIN3 associated polypeptide P18 )

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-52
Identity = 106/153 (69.28%), Postives = 124/153 (81.05%), Query Frame = 0


Query: 13  AATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKTCPLLLRVFTKAGGHHTDEDF 72
           A  A  QG   GRPLPPP +      PPRP+ EPVDREKTCPLLLRVFTK+GGHHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPR-GVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G + +++V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREV 121

Query: 133 GMTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 166
           G T +Y N ++ DDSK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]

BLAST of PI0021202 vs. TAIR 10
Match: AT2G45640.2 (SIN3 associated polypeptide P18 )

HSP 1 Score: 195.7 bits (496), Expect = 3.0e-50
Identity = 106/153 (69.28%), Postives = 121/153 (79.08%), Query Frame = 0


Query: 13  AATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKTCPLLLRVFTKAGGHHTDEDF 72
           A  A  QG   GRPLPPP +      PPRP+ EPVDREKTCPLLLRVFTK+GGHHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPR-GVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G +    V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGY---NV 121

Query: 133 GMTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 166
           G T +Y N ++ DDSK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 148

The following BLAST results are available for this feature:

BLAST of PI0021202 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64644	4.5e-51	69.28	Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2...	[more]
Q3T022	6.4e-29	55.74	Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV...	[more]
O00422	6.4e-29	55.74	Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 ...	[more]
Q5RDT5	6.4e-29	55.74	Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 ...	[more]
O55128	8.3e-29	55.74	Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1...	[more]

BLAST of PI0021202 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L751	5.0e-85	97.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038150 PE=3 SV=1	[more]
A0A5D3D7E1	1.4e-84	97.59	Histone deacetylase complex subunit SAP18-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1DES5	1.4e-84	96.99	histone deacetylase complex subunit SAP18-like OS=Momordica charantia OX=3673 GN...	[more]
A0A1S3BLT9	1.4e-84	97.59	histone deacetylase complex subunit SAP18-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1KTJ0	4.4e-81	93.98	histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of PI0021202 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147963.1	1.0e-84	97.59	histone deacetylase complex subunit SAP18 [Cucumis sativus] >KGN55941.1 hypothet...	[more]
XP_022152730.1	3.0e-84	96.99	histone deacetylase complex subunit SAP18-like [Momordica charantia]	[more]
XP_008448944.1	3.0e-84	97.59	PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo] >TYK194...	[more]
XP_038905116.1	1.1e-81	95.78	histone deacetylase complex subunit SAP18-like [Benincasa hispida]	[more]
XP_022946300.1	9.0e-81	93.98	histone deacetylase complex subunit SAP18-like [Cucurbita moschata] >XP_02300558...	[more]

BLAST of PI0021202 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45640.1	3.2e-52	69.28	SIN3 associated polypeptide P18	[more]
AT2G45640.2	3.0e-50	69.28	SIN3 associated polypeptide P18	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR042534	Sin3 associated polypeptide p18 superfamily	GENE3D	3.10.20.550	ASAP complex, SAP18 subunit	coord: 37..166 e-value: 2.3E-46 score: 158.9
IPR010516	Sin3 associated polypeptide p18	PFAM	PF06487	SAP18	coord: 46..165 e-value: 1.2E-38 score: 132.5
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 14..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	PANTHER	PTHR13082:SF4	DEACETYLASE COMPLEX SUBUNIT SAP18, PUTATIVE-RELATED	coord: 14..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021202.1	PI0021202.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003714	transcription corepressor activity