PI0021037 (gene) Melon (PI 482460) v1

Overview


Name	PI0021037
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	zinc finger BED domain-containing protein RICESLEEPER 1-like
Location	chr07: 21167536 .. 21168284 (-)
RNA-Seq Expression	PI0021037
Synteny	PI0021037

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGGGCATTCTTAAGTATGCAAGAGTTGCGATGAGTTGACGGGTTATGTCCAAACAATGGGAGAGTCAAAAGATCGGAAGTACTTTTTCGTCCTTGTATTCCAATTTTCCAAATGTTGTTCAAAATCCTACTCTATTTGGTCATGTAGTCCATAGTTGAGTTGCCTTCCATTCTTTGACTCATTTAATTGCTAAATTGTTTTAGAGTTTAAGTTATTCTGTATGTCATTGTTATCTGTGTTCCATTCAACTTGAACCATTTTAATCTTTACATTGTTTTATAAATAGAACAATTAAGAAGTTAGTCCCTTTTGTGCCAGCTATGTAGAAAGTCTTTAAAGAATTGTTTTCCCTTCACTTCGCTATCGTTTTATCTTTGCCTATGCAGTTCATAGATTTTACAGAATTTGGTTTATTTATCCCCATCCAGTGGAGATATCTAAAAACTCACTGATCAAGAAACCGAAGAGGTTGACATCGGTAGTTTGGTATCAATTTAAGAAGGCCAAAAGGGCAGACATTTGTTATGATGTTTGTGTGCATTGCAACAAGAAGCTCAGTGGCTCAAGTAATAGCAGAACCGCACGTCTAAGAAATCAATTGATTTAATGTCTAAAAAGATTCAATCATGACGTTTGTCAACTACTTGCAGCCAAAAGATTAAAAAGGATGGCTCGACTGGTCTTGGAAACATCAGCTCTTCTGAAGGGCAGAGAAAAGATGAGTTTAAATAAGCAATTGTGA

mRNA sequence

ATGGAAAAGGGCATTCTTAAATTTTACAGAATTTGGTTTATTTATCCCCATCCAGTGGAGATATCTAAAAACTCACTGATCAAGAAACCGAAGAGGTTGACATCGGTAGTTTGGTATCAATTTAAGAAGGCCAAAAGGGCAGACATTTGTTATGATGTTTGTGTGCATTGCAACAAGAAGCTCAGTGGCTCAACCAAAAGATTAAAAAGGATGGCTCGACTGGTCTTGGAAACATCAGCTCTTCTGAAGGGCAGAGAAAAGATGAGTTTAAATAAGCAATTGTGA

Coding sequence (CDS)

ATGGAAAAGGGCATTCTTAAATTTTACAGAATTTGGTTTATTTATCCCCATCCAGTGGAGATATCTAAAAACTCACTGATCAAGAAACCGAAGAGGTTGACATCGGTAGTTTGGTATCAATTTAAGAAGGCCAAAAGGGCAGACATTTGTTATGATGTTTGTGTGCATTGCAACAAGAAGCTCAGTGGCTCAACCAAAAGATTAAAAAGGATGGCTCGACTGGTCTTGGAAACATCAGCTCTTCTGAAGGGCAGAGAAAAGATGAGTTTAAATAAGCAATTGTGA

Protein sequence

MEKGILKFYRIWFIYPHPVEISKNSLIKKPKRLTSVVWYQFKKAKRADICYDVCVHCNKKLSGSTKRLKRMARLVLETSALLKGREKMSLNKQL

Homology

[Close]

BLAST of PI0021037 vs. ExPASy TrEMBL
Match: A0A6J1C582 (zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008476 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.4e-13
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 16 PHPVEISKNSLIKKPKRLTSVVWYQFKKAKRADICYDVCVHCNKKLSGST 66
          PH +EIS +S IKKPKRLTSVVW  F++ ++ADICY VCVHCNKKLSGS+
Sbjct: 24 PHEMEISNDSSIKKPKRLTSVVWNHFERVRKADICYAVCVHCNKKLSGSS 73

[Close]

BLAST of PI0021037 vs. ExPASy TrEMBL
Match: A0A803LJ11 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 17 HPVEISKNSLIKKPKRLTSVVWYQFKKAKRADICYDVCVHCNKKLSGST 66
          H +EI+  ++IKKPKRLTSVVW  F++ K+ADICY VCVHCNK+LSGS+
Sbjct: 10 HVMEITSETVIKKPKRLTSVVWNHFERVKKADICYAVCVHCNKRLSGSS 58

[Close]

BLAST of PI0021037 vs. ExPASy TrEMBL
Match: A0A803LW05 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 17 HPVEISKNSLIKKPKRLTSVVWYQFKKAKRADICYDVCVHCNKKLSGST 66
          H +EI+  ++IKKPKRLTSVVW  F++ K+ADICY VCVHCNK+LSGS+
Sbjct: 33 HVMEITSETVIKKPKRLTSVVWNHFERVKKADICYAVCVHCNKRLSGSS 81

[Close]

BLAST of PI0021037 vs. ExPASy TrEMBL
Match: A0A6J1C6S9 (zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008476 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.5e-11
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 19 VEISKNSLIKKPKRLTSVVWYQFKKAKRADICYDVCVHCNKKLSGST 66
          +EIS +S IKKPKRLTSVVW  F++ ++ADICY VCVHCNKKLSGS+
Sbjct: 1  MEISNDSSIKKPKRLTSVVWNHFERVRKADICYAVCVHCNKKLSGSS 47

[Close]

BLAST of PI0021037 vs. ExPASy TrEMBL
Match: A0A067KRK2 (BED-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11935 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.0e-11
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 19 VEISKNSLIKKPKRLTSVVWYQFKKAKRADICYDVCVHCNKKLSGST 66
          +E+S  S IKKPKRLTSVVW  F++ ++ADICY VCVHCNKKLSGS+
Sbjct: 1  MEVSNESAIKKPKRLTSVVWNHFERIRKADICYAVCVHCNKKLSGSS 47

[Close]

BLAST of PI0021037 vs. NCBI nr
Match: XP_022136900.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-12
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 16 PHPVEISKNSLIKKPKRLTSVVWYQFKKAKRADICYDVCVHCNKKLSGST 66
          PH +EIS +S IKKPKRLTSVVW  F++ ++ADICY VCVHCNKKLSGS+
Sbjct: 24 PHEMEISNDSSIKKPKRLTSVVWNHFERVRKADICYAVCVHCNKKLSGSS 73

[Close]

BLAST of PI0021037 vs. NCBI nr
Match: XP_022136908.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 [Momordica charantia] >XP_022136915.1 zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 [Momordica charantia] >XP_022136922.1 zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 7.3e-11
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 19 VEISKNSLIKKPKRLTSVVWYQFKKAKRADICYDVCVHCNKKLSGST 66
          +EIS +S IKKPKRLTSVVW  F++ ++ADICY VCVHCNKKLSGS+
Sbjct: 1  MEISNDSSIKKPKRLTSVVWNHFERVRKADICYAVCVHCNKKLSGSS 47

[Close]

BLAST of PI0021037 vs. NCBI nr
Match: XP_021895025.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 [Carica papaya] >XP_021895026.1 zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 [Carica papaya] >XP_021895027.1 zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 [Carica papaya])

HSP 1 Score: 77.0 bits (188), Expect = 9.5e-11
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 19 VEISKNSLIKKPKRLTSVVWYQFKKAKRADICYDVCVHCNKKLSGST 66
          +E+S  S IKKPKRLTSVVW  F++ ++ADICY VCVHCNKKLSGS+
Sbjct: 1  MEVSNESTIKKPKRLTSVVWNHFERVRKADICYAVCVHCNKKLSGSS 47

[Close]

BLAST of PI0021037 vs. NCBI nr
Match: XP_012076092.1 (zinc finger BED domain-containing protein RICESLEEPER 1 [Jatropha curcas] >KDP34464.1 hypothetical protein JCGZ_11935 [Jatropha curcas])

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 19 VEISKNSLIKKPKRLTSVVWYQFKKAKRADICYDVCVHCNKKLSGST 66
          +E+S  S IKKPKRLTSVVW  F++ ++ADICY VCVHCNKKLSGS+
Sbjct: 1  MEVSNESAIKKPKRLTSVVWNHFERIRKADICYAVCVHCNKKLSGSS 47

[Close]

BLAST of PI0021037 vs. NCBI nr
Match: KAG6591773.1 (Zinc finger BED domain-containing protein RICESLEEPER 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 19 VEISKNSLIKKPKRLTSVVWYQFKKAKRADICYDVCVHCNKKLSGST 66
          +EIS +S IKKPKRLTSVVW  F++ ++ADICY VC+HCNKKLSGS+
Sbjct: 1  MEISNDSSIKKPKRLTSVVWNHFERVRKADICYAVCLHCNKKLSGSS 47

The following BLAST results are available for this feature:

BLAST of PI0021037 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021037 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C582	8.4e-13	72.00	zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 OS=Momor...	[more]
A0A803LJ11	2.1e-11	67.35	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A803LW05	2.1e-11	67.35	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A6J1C6S9	3.5e-11	72.34	zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 OS=Momor...	[more]
A0A067KRK2	6.0e-11	70.21	BED-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11935 PE...	[more]

BLAST of PI0021037 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136900.1	1.7e-12	72.00	zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 [Momordi...	[more]
XP_022136908.1	7.3e-11	72.34	zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 [Momordi...	[more]
XP_021895025.1	9.5e-11	70.21	zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 [Carica ...	[more]
XP_012076092.1	1.2e-10	70.21	zinc finger BED domain-containing protein RICESLEEPER 1 [Jatropha curcas] >KDP34...	[more]
KAG6591773.1	1.6e-10	70.21	Zinc finger BED domain-containing protein RICESLEEPER 1, partial [Cucurbita argy...	[more]

BLAST of PI0021037 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23272	BED FINGER-RELATED	coord: 20..66
None	No IPR available	PANTHER	PTHR23272:SF147	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE	coord: 20..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021037.1	PI0021037.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009791	post-embryonic development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046983	protein dimerization activity