PI0021032 (gene) Melon (PI 482460) v1

Overview


Name	PI0021032
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr03: 14776995 .. 14777159 (+)
RNA-Seq Expression	PI0021032
Synteny	PI0021032

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAACGCTGATGTGACAGAGGATTACGACGAGGGTGATTCGACGTACGCAACAACTGCAAGTGATGACATTCACTACATTGAAACCTCCAATGAATGGAGTCAGTGGAGGGATGATTTGGCCGAAGAAATATTCAGTGAATGGGAATTACGTAATCAGTAG

mRNA sequence

ATGGTGAACGCTGATGTGACAGAGGATTACGACGAGGGTGATTCGACGTACGCAACAACTGCAAGTGATGACATTCACTACATTGAAACCTCCAATGAATGGAGTCAGTGGAGGGATGATTTGGCCGAAGAAATATTCAGTGAATGGGAATTACGTAATCAGTAG

Coding sequence (CDS)

ATGGTGAACGCTGATGTGACAGAGGATTACGACGAGGGTGATTCGACGTACGCAACAACTGCAAGTGATGACATTCACTACATTGAAACCTCCAATGAATGGAGTCAGTGGAGGGATGATTTGGCCGAAGAAATATTCAGTGAATGGGAATTACGTAATCAGTAG

Protein sequence

MVNADVTEDYDEGDSTYATTASDDIHYIETSNEWSQWRDDLAEEIFSEWELRNQ

Homology

[Close]

BLAST of PI0021032 vs. ExPASy TrEMBL
Match: A0A5A7V485 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G003880 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1   MVNADVTEDYDEGDSTYATTASDDIHYIETSNEWSQWRDDLAEEIFSEWELRN 54
           M+NAD+++D DEGDSTYATT  DDIHYIETSN+W QW+DDLA+EIFSEW LRN
Sbjct: 232 MMNADISKDIDEGDSTYATTIGDDIHYIETSNKWGQWKDDLAKEIFSEWGLRN 284

[Close]

BLAST of PI0021032 vs. ExPASy TrEMBL
Match: A0A5D3BLS5 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00360 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1   MVNADVTEDYDEGDSTYATTASDDIHYIETSNEWSQWRDDLAEEIFSEWELRN 54
           M+NAD+++D DEGDSTYATT  DDIHYIETSN+W QW+DDLA+EIFSEW LRN
Sbjct: 226 MMNADISKDIDEGDSTYATTIGDDIHYIETSNKWGQWKDDLAKEIFSEWGLRN 278

[Close]

BLAST of PI0021032 vs. ExPASy TrEMBL
Match: A0A5D3D9Z3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00220 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MVNADVTEDYDEGDSTYATTASDDIHYIETSNEWSQWRDDLAEEIFSEWELRNQ 55
           M N D+ ++ DE DST+ATTA+DDIHYIETSNEWSQWRDDLAEE+F+EWELRNQ
Sbjct: 313 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 366

[Close]

BLAST of PI0021032 vs. ExPASy TrEMBL
Match: A0A5A7TWH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001380 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MVNADVTEDYDEGDSTYATTASDDIHYIETSNEWSQWRDDLAEEIFSEWELRNQ 55
           M N D+ ++ DE DST+ATTA+DDIHYIETSNEWSQWRDDLAEE+F+EWELRNQ
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]

BLAST of PI0021032 vs. ExPASy TrEMBL
Match: A0A5A7UGH9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00700 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MVNADVTEDYDEGDSTYATTASDDIHYIETSNEWSQWRDDLAEEIFSEWELRNQ 55
           M N D+ ++ DE DST+ATTA+DDIHYIETSNEWSQWRDDLAEE+F+EWELRNQ
Sbjct: 218 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 271

[Close]

BLAST of PI0021032 vs. NCBI nr
Match: TYK00771.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1   MVNADVTEDYDEGDSTYATTASDDIHYIETSNEWSQWRDDLAEEIFSEWELRN 54
           M+NAD+++D DEGDSTYATT  DDIHYIETSN+W QW+DDLA+EIFSEW LRN
Sbjct: 226 MMNADISKDIDEGDSTYATTIGDDIHYIETSNKWGQWKDDLAKEIFSEWGLRN 278

[Close]

BLAST of PI0021032 vs. NCBI nr
Match: KAA0060531.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1   MVNADVTEDYDEGDSTYATTASDDIHYIETSNEWSQWRDDLAEEIFSEWELRN 54
           M+NAD+++D DEGDSTYATT  DDIHYIETSN+W QW+DDLA+EIFSEW LRN
Sbjct: 232 MMNADISKDIDEGDSTYATTIGDDIHYIETSNKWGQWKDDLAKEIFSEWGLRN 284

[Close]

BLAST of PI0021032 vs. NCBI nr
Match: KAA0065286.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MVNADVTEDYDEGDSTYATTASDDIHYIETSNEWSQWRDDLAEEIFSEWELRNQ 55
           M N D+ ++ DE DST+ATTA+DDIHYIETSNEWSQWRDDLAEE+F+EWELRNQ
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]

BLAST of PI0021032 vs. NCBI nr
Match: KAA0048281.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MVNADVTEDYDEGDSTYATTASDDIHYIETSNEWSQWRDDLAEEIFSEWELRNQ 55
           M N D+ ++ DE DST+ATTA+DDIHYIETSNEWSQWRDDLAEE+F+EWELRNQ
Sbjct: 269 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 322

[Close]

BLAST of PI0021032 vs. NCBI nr
Match: KAA0068124.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MVNADVTEDYDEGDSTYATTASDDIHYIETSNEWSQWRDDLAEEIFSEWELRNQ 55
           M N D+ ++ DE DST+ATTA+DDIHYIETSNEWSQWRDDLAEE+F+EWELRNQ
Sbjct: 290 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 343

The following BLAST results are available for this feature:

BLAST of PI0021032 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021032 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V485	1.0e-15	77.36	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3BLS5	1.0e-15	77.36	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3D9Z3	1.4e-15	77.78	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TWH8	1.4e-15	77.78	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UGH9	1.4e-15	77.78	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0021032 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00771.1	2.1e-15	77.36	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0060531.1	2.1e-15	77.36	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0065286.1	2.8e-15	77.78	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048281.1	2.8e-15	77.78	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0068124.1	2.8e-15	77.78	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0021032 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021032.1	PI0021032.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding