PI0020928 (gene) Melon (PI 482460) v1

Overview


Name	PI0020928
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr08: 1005670 .. 1010257 (-)
RNA-Seq Expression	PI0020928
Synteny	PI0020928

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCATCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACGTGAGTCTATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCAGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGAGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAAGAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAAACTTTTCAATCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTAGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGTCCTGCTGTTGCTACTAAGGGCAAGGGGAAGGCTAAGGTAGCCGACAAGGGGAAGTCCTTCCACTGCAATATGGATGGACATTGGAAGAGAAACTGCCCCAAGTACCTTGCTGAGAAGAAGAAGGAAAAAGAAGGTAAATATGATTACTTGTTTTAGAAACTTGTTTAGTGGAAAATGACCAAAATGCCTGGATACTTGATTCAGGAGCCACTAATCATGTTTGTTCTTCTTTACAGAAAACTAGTTCCTTCTAGCAGCTCGAAGAGGGTGAAATGACGCTCAAGGTTGGAACGAGAGACGCCATTTCAGCTTGTGCAGTGAATGAAGTTATTTTTTTAGAAATAGATATTTAATCTTAGATAATTTGTATATAGTTCCTAAGATTAAAAGGAATCCTGTATCTATTTCTTGTCTTCTTGAACAATGTCACTCTATAAATTTTTCTTTAAATGAAGCGTTCATTTCTAAGAATGGTGTACACATTTGTTCAGCTAAGTTAGAAAACAACTTGTATGTATTAAGACCTAACGAAGCGAAAGCAATTTTAAATCATGAGATGTTTAAAACTGCTAACACTCAAAATAAAAGGCAAAGAATTTCTCAAAATAACAATACTTATCTTTGGCATTTAAGATTAGGTCACATTAATCTCGATCGGATCGGGAGATTAGTAAAGAATGGACTTCTAAATGAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTGTCTCGAAGGAAAAATGACTAAAAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCCCTAGAACTTATACATTCAGACCTCTTAGTGGTCCGATGAATGTGAAAGCTCGAGGAGGTTTCAAATACTTCATCTCTTTTATAGATGATTATTCGAGGTATGGTTATTTATACTTAATGGAGCGTAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGTTGAAGTTGAAAATCTGTTAAGTAAAGAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAAGACTATATGATAGAACATGGAATTCAATCTCAACTCTCAGCACCAGGTACACCTCAACAAAATGGTGTATCAGAAAGGAGAAAAAGAATCCTGTTAGACATGGTTCGTTCAATGATGAGTTATGCGCAATTGCCTAGCTCATTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTCGAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCACTTCAGGATATGGGGTTGTCCAGCATATGTGCTAGTGACAAATCCCAAAAAGTTAGAACCTCGTTCAAGATTATGCCAATTTATTGGTTACCCTAAAGAAACGAGAGGTGGTCTATTCTTCGATCCATAAGAAAACAGAGTATTTGTATCGACAAACGCTACTTTCTTAGAAGAAGATCACATGAGATATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGAATCAACAAGAGTTGTTGATGAAGCTGGTCCCTCATCAAGAGTTGATGAAACCAACGCATCAGGTCAGTCTCATCCTTCTCAATCGTTGAGATTGCCTCGACGTAGTGGGAGGGTTGTATCACAACCTAACCATTACTTGGGTTTAACTGAAACTCAGGTTGTCATACCAGATGATGGTGTTGAGGATCCATTGTCCTATAAACAGGCAATGAATGATGTAGACAAAGACCAATAGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAATGGAGTATGGGAGCTTGTAGATCTACCTGAAGGGGTGAAACCCATAGGGCGCAAATGAATCTATAAGAGAAAGAGAGATTCAGCTGGGAAGGTACAGACCTTCAAAGCTAGACTTGTAGCAAAATGGTACACCCAAAGGGAAGGGGTTGACTATGAGGAAACTTTTTCCCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCTTGTCCATAGCCACATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTGCTTTTCTAAATGACAATCTTGAAGAGAGTATCTTTATGTCTCAACCTGAAGGGTTCATAACCCAAGGTCAAGAGCAAAAAGTTTGCAAGCTAAATCGATCCATTTATGGGTTGAAACAAGCATCCAGATCTTGGAACATTAGGTTTGATACGGTGATCAAATCTTATGGTTTTGACCAAAATGTTGATGAACCTTGTGTATACAAGAAAATCAACAAAGGTAAAGTAGCGTTCTTAGTACTTTATGTGGACGATATCCTTCTCATTGGAAATGATATAGGATACCTAACTGACTTAAAACTTGGCTAGCAGCCCAATTCCAAATGAAAGATTTAGGAGAGGCACAGTATGTTCTTGGGATCCAAATCATAAGGGATCATAAGAACAAAACGCTAGCTCTATCTCAAGCAACCTATATCGACAAAATGTTGATTTGATATTCGATGCAGAACTCCAAGAAGGATTTATTACCTTTCAGACATGGGGTTCACTTGTCGAAGGAACAGTGTCCTAAGACACCTCAAGATGTTGAGGATATGAGACGTATTCTTTATGCCTCAGCTGTGGGCAGCTTAATGTATGCTATGCTCTGCATTAGGCCAGACATTTGTTATGCAGTGGGAATAGTCAGTAGGTACCAATCCAACCCAAGATTAGACCACTGGACAACGGTTAAAATTATTCTCAAGCATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACACTGACTCTAACTTCCAAACTGACAAGGATTCTAGGAAATCCACGTCGGGATCAGTGTTCACCCTGAACGGGGGAGCTGTTGTATGGCGTAGCATCATGCAAGAATGCATTGCGGACTCCACCATGGAGGCTGAATACGTCGCTGCCTGTGAAGTAGCAAAAGAAGCAGTTTGGCTCAGGAAGTTCCTGCATGATTTGGAAGTTGTTCCAAACATGAACTTGTCCATCACTCTTTATTGTGACAACAGTGGGGCAGTAGCCAATTCTAAAAAACCTCGCAGCCACAAACAAGGGAAACACATAGAGAGGAAGTATCACCTGATACGGGATATTGTGCAACGAGGGGATGTGATCGTTACCAAGATCGCTTCAGAGCACAACATTGCTGATCCGTTTACGAAGACTCTCACGGCTAAAGTGTTCAAGGGTCATCTAGAAAGTCTAGGTCTGCGAGATATGTACATTAGGTGATCTAGAGCAAGTGGGAGATGTGTAATGGGTATGAGGATGCCCTAGTTTATTGTATTTGTATATATACGTTTTATGTAATATACTTGTACATTTTACCATTTCCAATGTTTGAGGATTGTTTTATTATGTACATCCCATAAACTACCATTAGACTAGAGTTTTAGTCCAAGTGGGAGTTTGTTGGGTTTTATGTCCTAAAACTCGTGGATAGTAAATGTAATCCATTGACTATGATTAATAAAAGTGTTATTATTATAATTTCAATAAAGCGTTATTGATTATAATATTAGTTTTGTCTTAATAACCTAAATCCAATAAACTAACATCCTAAGTTGTTTGATGAGTCTTGAACTGTATGTGGAGACATACAAGGATCAATGTTCGAGATACAACTTAAAGGGTCTATAGTATAGGGATAAGGTTGGGTACCTTATCCTGGTAACACTATGGATACGACTCACTTTGCATTTGATACAAACGCAGTGATCCAACGCATTCGTGTAGGTGACATGCGAGTGAGGGTATCTCATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTAACCACTAG

mRNA sequence

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCATCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACGTGAGTCTATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCAGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGAGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAAGAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAAACTTTTCAATCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTAGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGTGATCCAACGCATTCGTGTAGGTGACATGCGAGTGAGGGTATCTCATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTAACCACTAG

Coding sequence (CDS)

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCATCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACGTGAGTCTATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCAGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGAGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAAGAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAAACTTTTCAATCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTAGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGTGATCCAACGCATTCGTGTAGGTGACATGCGAGTGAGGGTATCTCATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTAACCACTAG

Protein sequence

MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTIRDAHDRWTKANEKARVYILASMSDVLSKKRESMVTARQIMDSLQEMFGQPSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMKKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSRTKKIQKKKGGKGKVIQRIRVGDMRVRVSHAMSLHKTGPRNSNH

Homology

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BLAST of PI0020928 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-05
Identity = 39/153 (25.49%), Postives = 71/153 (46.41%), Query Frame = 0


Query: 16  GDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTIRDAHDRWTKANEKARVYILA 75
           G+ YA WK  +  +L   D+  V+    P            +  D W KA   A+  I+ 
Sbjct: 13  GEKYAIWKFRIRALLAEQDVLKVVDGLMP-----------NEVDDSWKKAERCAKSTIIE 72

Query: 76  SMSDVLSKKRESMVTARQIMDSLQEMFGQPSIQIQHEAIKYVYNARMKEGQSVRE--HVL 135
            +SD       S +TARQI+++L  ++ + S+  Q    K + + ++    S+    H+ 
Sbjct: 73  YLSDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIF 132

Query: 136 DMMVQFNVAETNGAVIDEQSQVSFILESLPKSF 167
           D ++   +A   GA I+E  ++S +L +LP  +
Sbjct: 133 DELISELLAA--GAKIEEMDKISHLLITLPSCY 152

[Close]

BLAST of PI0020928 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 6.7e-87
Identity = 173/243 (71.19%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTIRDAHD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++T+R+ ++
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWTKANEKARVYILASMSDVLSKKRESMVTARQIMDSLQEMFGQPSIQIQHEAIKYVYNA 120
           RW KANEKAR YILAS+S+VL+KK ESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMKKIEY 180
           RM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVM KI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKG 240
           T+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKKG
Sbjct: 181 TLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG 240

Query: 241 GKG 243
           G+G
Sbjct: 241 GQG 242

[Close]

BLAST of PI0020928 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 6.7e-87
Identity = 173/243 (71.19%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTIRDAHD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++T+R+ ++
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWTKANEKARVYILASMSDVLSKKRESMVTARQIMDSLQEMFGQPSIQIQHEAIKYVYNA 120
           RW KANEKAR YILAS+S+VL+KK ESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMKKIEY 180
           RM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVM KI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKG 240
           T+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKKG
Sbjct: 181 TLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG 240

Query: 241 GKG 243
           G+G
Sbjct: 241 GQG 242

[Close]

BLAST of PI0020928 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 6.7e-87
Identity = 173/243 (71.19%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTIRDAHD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++T+R+ ++
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWTKANEKARVYILASMSDVLSKKRESMVTARQIMDSLQEMFGQPSIQIQHEAIKYVYNA 120
           RW KANEKAR YILAS+S+VL+KK ESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMKKIEY 180
           RM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVM KI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKG 240
           T+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKKG
Sbjct: 181 TLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG 240

Query: 241 GKG 243
           G+G
Sbjct: 241 GQG 242

[Close]

BLAST of PI0020928 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 6.7e-87
Identity = 173/243 (71.19%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTIRDAHD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++T+R+ ++
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWTKANEKARVYILASMSDVLSKKRESMVTARQIMDSLQEMFGQPSIQIQHEAIKYVYNA 120
           RW KANEKAR YILAS+S+VL+KK ESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMKKIEY 180
           RM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVM KI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKG 240
           T+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKKG
Sbjct: 181 TLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG 240

Query: 241 GKG 243
           G+G
Sbjct: 241 GQG 242

[Close]

BLAST of PI0020928 vs. ExPASy TrEMBL
Match: A0A5D3CSZ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00320 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 6.7e-87
Identity = 173/243 (71.19%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTIRDAHD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++T+R+ ++
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWTKANEKARVYILASMSDVLSKKRESMVTARQIMDSLQEMFGQPSIQIQHEAIKYVYNA 120
           RW KANEKAR YILAS+S+VL+KK ESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMKKIEY 180
           RM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVM KI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKG 240
           T+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKKG
Sbjct: 181 TLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG 240

Query: 241 GKG 243
           G+G
Sbjct: 241 GQG 242

[Close]

BLAST of PI0020928 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 330.5 bits (846), Expect = 1.4e-86
Identity = 173/243 (71.19%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTIRDAHD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++T+R+ ++
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWTKANEKARVYILASMSDVLSKKRESMVTARQIMDSLQEMFGQPSIQIQHEAIKYVYNA 120
           RW KANEKAR YILAS+S+VL+KK ESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMKKIEY 180
           RM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVM KI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKG 240
           T+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKKG
Sbjct: 181 TLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG 240

Query: 241 GKG 243
           G+G
Sbjct: 241 GQG 242

[Close]

BLAST of PI0020928 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 330.5 bits (846), Expect = 1.4e-86
Identity = 173/243 (71.19%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTIRDAHD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++T+R+ ++
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWTKANEKARVYILASMSDVLSKKRESMVTARQIMDSLQEMFGQPSIQIQHEAIKYVYNA 120
           RW KANEKAR YILAS+S+VL+KK ESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMKKIEY 180
           RM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVM KI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKG 240
           T+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKKG
Sbjct: 181 TLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG 240

Query: 241 GKG 243
           G+G
Sbjct: 241 GQG 242

[Close]

BLAST of PI0020928 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 330.5 bits (846), Expect = 1.4e-86
Identity = 173/243 (71.19%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTIRDAHD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++T+R+ ++
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWTKANEKARVYILASMSDVLSKKRESMVTARQIMDSLQEMFGQPSIQIQHEAIKYVYNA 120
           RW KANEKAR YILAS+S+VL+KK ESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMKKIEY 180
           RM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVM KI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKG 240
           T+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKKG
Sbjct: 181 TLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG 240

Query: 241 GKG 243
           G+G
Sbjct: 241 GQG 242

[Close]

BLAST of PI0020928 vs. NCBI nr
Match: KAA0051952.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 330.5 bits (846), Expect = 1.4e-86
Identity = 173/243 (71.19%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTIRDAHD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++T+R+ ++
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWTKANEKARVYILASMSDVLSKKRESMVTARQIMDSLQEMFGQPSIQIQHEAIKYVYNA 120
           RW KANEKAR YILAS+S+VL+KK ESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMKKIEY 180
           RM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVM KI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKG 240
           T+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKKG
Sbjct: 181 TLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG 240

Query: 241 GKG 243
           G+G
Sbjct: 241 GQG 242

[Close]

BLAST of PI0020928 vs. NCBI nr
Match: KAA0035879.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051221.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051893.1 gag/pol protein [Cucumis melo var. makuwa] >TYK00551.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 330.5 bits (846), Expect = 1.4e-86
Identity = 173/243 (71.19%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTIRDAHD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++T+R+ ++
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWTKANEKARVYILASMSDVLSKKRESMVTARQIMDSLQEMFGQPSIQIQHEAIKYVYNA 120
           RW KANEKAR YILAS+S+VL+KK ESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMKKIEY 180
           RM EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVM KI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 TMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSRTKKIQKKKG 240
           T+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSS  KK +KKKG
Sbjct: 181 TLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG 240

Query: 241 GKG 243
           G+G
Sbjct: 241 GQG 242

The following BLAST results are available for this feature:

BLAST of PI0020928 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	2.1e-05	25.49	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of PI0020928 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	6.7e-87	71.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	6.7e-87	71.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TU93	6.7e-87	71.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	6.7e-87	71.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]
A0A5D3CSZ6	6.7e-87	71.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G0032...	[more]

BLAST of PI0020928 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044955.1	1.4e-86	71.19	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	1.4e-86	71.19	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	1.4e-86	71.19	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0051952.1	1.4e-86	71.19	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035879.1	1.4e-86	71.19	gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumi...	[more]

BLAST of PI0020928 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..192 e-value: 1.4E-18 score: 67.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..245
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 7..243
None	No IPR available	PANTHER	PTHR35317:SF16	ZINC FINGER, CCHC-TYPE-RELATED	coord: 7..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020928.1	PI0020928.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding