Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATACAATACTCTAGAATTGAAGAGGTTGACAGAAATATATGACTTCTTGGCTGGCCTCAATTCGAAGTTTAATGTTGTCTGTGAGCGTATATTGGGGCAAAGACCTACTCCTTCCCTGATGGAGGTTTGTTCAGAAGTCCAACTTGAGGAGAACCGTACAAGTGCTAGGAATATTCTGACCACCCCTGCCATTGATTCCACTGCCTTTAGTGCGAGATCCTCTACTCATGACAGCGGAAGCACAACGAAAAATTGGTCCCTATTTATGAGCACTGTAAGAAACTGTGGCACACCAAGGAAGTATTGGAAATTACATGGTCATTCCCCAAGAGGTAAGAAACGTCCTCTGAATGACAAACAAAATTCAGAACGAGCCTATGTGAGTGAGTTGGCTGGAACTTCTCAACCATCTGGCCACCCTGGAAGCCAAAATGATCCTAGTTCGACAACACTAAGAGCTATTGCTCAGTAG
mRNA sequence
ATGGCATACAATACTCTAGAATTGAAGAGGTTGACAGAAATATATGACTTCTTGGCTGGCCTCAATTCGAAGTTTAATGTTGTCTGTGAGCGTATATTGGGGCAAAGACCTACTCCTTCCCTGATGGAGGTTTGTTCAGAAGTCCAACTTGAGGAGAACCGTACAAGTGCTAGGAATATTCTGACCACCCCTGCCATTGATTCCACTGCCTTTAGTGCGAGATCCTCTACTCATGACAGCGGAAGCACAACGAAAAATTGGTCCCTATTTATGAGCACTGTAAGAAACTGTGGCACACCAAGGAAGTATTGGAAATTACATGGTCATTCCCCAAGAGGTAAGAAACGTCCTCTGAATGACAAACAAAATTCAGAACGAGCCTATGTGAGTGAGTTGGCTGGAACTTCTCAACCATCTGGCCACCCTGGAAGCCAAAATGATCCTAGTTCGACAACACTAAGAGCTATTGCTCAGTAG
Coding sequence (CDS)
ATGGCATACAATACTCTAGAATTGAAGAGGTTGACAGAAATATATGACTTCTTGGCTGGCCTCAATTCGAAGTTTAATGTTGTCTGTGAGCGTATATTGGGGCAAAGACCTACTCCTTCCCTGATGGAGGTTTGTTCAGAAGTCCAACTTGAGGAGAACCGTACAAGTGCTAGGAATATTCTGACCACCCCTGCCATTGATTCCACTGCCTTTAGTGCGAGATCCTCTACTCATGACAGCGGAAGCACAACGAAAAATTGGTCCCTATTTATGAGCACTGTAAGAAACTGTGGCACACCAAGGAAGTATTGGAAATTACATGGTCATTCCCCAAGAGGTAAGAAACGTCCTCTGAATGACAAACAAAATTCAGAACGAGCCTATGTGAGTGAGTTGGCTGGAACTTCTCAACCATCTGGCCACCCTGGAAGCCAAAATGATCCTAGTTCGACAACACTAAGAGCTATTGCTCAGTAG
Protein sequence
MAYNTLELKRLTEIYDFLAGLNSKFNVVCERILGQRPTPSLMEVCSEVQLEENRTSARNILTTPAIDSTAFSARSSTHDSGSTTKNWSLFMSTVRNCGTPRKYWKLHGHSPRGKKRPLNDKQNSERAYVSELAGTSQPSGHPGSQNDPSSTTLRAIAQ
Homology
BLAST of PI0020890 vs. ExPASy TrEMBL
Match:
A0A5A7U8U2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1589G00420 PE=4 SV=1)
HSP 1 Score: 144.1 bits (362), Expect = 5.1e-31
Identity = 87/155 (56.13%), Postives = 103/155 (66.45%), Query Frame = 0
Query: 7 ELKRLTEIYDFLAGLNSKFNVVCERILGQRPTPSLMEVCSEVQLEENRTSARNILTTPAI 66
+L+ +YDFLAGLN KF+ VC RILGQRP PSLMEVC EV+LEE+RT+A +LTTP I
Sbjct: 313 KLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVRLEEDRTNAMGVLTTPTI 372
Query: 67 DSTAFSARSSTHDSGSTT-KNWSLFMSTVRNCGTPRKYWKLHGHSPRGKKRPLNDKQNSE 126
DS AFSARSS HDS K+ S+ + T + WKLHG P GKKR N+KQNS
Sbjct: 373 DSAAFSARSSNHDSDKNNGKSISVCEHCKKQWHTKDQCWKLHGRPPGGKKRSSNEKQNSG 432
Query: 127 RAYVSEL--AGTSQPSGHPGSQNDPSSTTLRAIAQ 159
RAY+SE A TSQ + SQ + TL AIAQ
Sbjct: 433 RAYISETIPASTSQSTDPTVSQT--KTPTLGAIAQ 465
BLAST of PI0020890 vs. ExPASy TrEMBL
Match:
A0A5A7SGQ5 (Cysteine-rich RLK RECEPTOR-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00080 PE=4 SV=1)
HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 85/155 (54.84%), Postives = 102/155 (65.81%), Query Frame = 0
Query: 7 ELKRLTEIYDFLAGLNSKFNVVCERILGQRPTPSLMEVCSEVQLEENRTSARNILTTPAI 66
+L+ + +YDFLAGLN KF+ VC RILGQRP PSLMEVC EV+LEE+RT+ +LTTP I
Sbjct: 309 KLEEVDRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVRLEEDRTNVMGVLTTPTI 368
Query: 67 DSTAFSARSSTHDSGSTT-KNWSLFMSTVRNCGTPRKYWKLHGHSPRGKKRPLNDKQNSE 126
DS AFSARSS HDS K+ + + T + WKLHG P GKKR N+KQNS
Sbjct: 369 DSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHGRPPGGKKRSSNEKQNSG 428
Query: 127 RAYVSEL--AGTSQPSGHPGSQNDPSSTTLRAIAQ 159
RAY+SE A TSQ + SQ + TL AIAQ
Sbjct: 429 RAYISETTPASTSQSTDPTASQT--KTPTLSAIAQ 461
BLAST of PI0020890 vs. ExPASy TrEMBL
Match:
A0A5A7VK49 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00640 PE=4 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 2.0e-30
Identity = 85/155 (54.84%), Postives = 102/155 (65.81%), Query Frame = 0
Query: 7 ELKRLTEIYDFLAGLNSKFNVVCERILGQRPTPSLMEVCSEVQLEENRTSARNILTTPAI 66
+L+ +YDFLAGLN KF+ VC RILGQRP PSLMEVC EV+LEE+RT+A +LTTP I
Sbjct: 341 KLEEANRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVRLEEDRTNAMGVLTTPTI 400
Query: 67 DSTAFSARSSTHDSGSTT-KNWSLFMSTVRNCGTPRKYWKLHGHSPRGKKRPLNDKQNSE 126
DS AFSA+SS HDS K+ + + T + WKLHG P GKKR N+KQNS
Sbjct: 401 DSAAFSAQSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHGRPPGGKKRSSNEKQNSG 460
Query: 127 RAYVSEL--AGTSQPSGHPGSQNDPSSTTLRAIAQ 159
RAY+SE A TSQ + SQ + TL AIAQ
Sbjct: 461 RAYISETTPASTSQSTDPTASQT--KTPTLGAIAQ 493
BLAST of PI0020890 vs. ExPASy TrEMBL
Match:
A0A5D3BJK7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G001020 PE=4 SV=1)
HSP 1 Score: 141.7 bits (356), Expect = 2.6e-30
Identity = 81/153 (52.94%), Postives = 98/153 (64.05%), Query Frame = 0
Query: 7 ELKRLTEIYDFLAGLNSKFNVVCERILGQRPTPSLMEVCSEVQLEENRTSARNILTTPAI 66
+L+ +YDFLAGLN KF+ VC RILGQRP PSLMEVC EV+LEE+RT+A +LTTP I
Sbjct: 313 KLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVRLEEDRTNAMGVLTTPTI 372
Query: 67 DSTAFSARSSTHDSGSTT-KNWSLFMSTVRNCGTPRKYWKLHGHSPRGKKRPLNDKQNSE 126
DS AFSARSS HDS K+ + + T + WKLHG P GKKR N+KQNS
Sbjct: 373 DSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHGRPPGGKKRSSNEKQNSG 432
Query: 127 RAYVSELAGTSQPSGHPGSQNDPSSTTLRAIAQ 159
RAY+SE S + + + TL AIAQ
Sbjct: 433 RAYISETTPASTSQSTDPTVSQTKTPTLGAIAQ 465
BLAST of PI0020890 vs. ExPASy TrEMBL
Match:
A0A5D3C4T4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00040 PE=4 SV=1)
HSP 1 Score: 141.7 bits (356), Expect = 2.6e-30
Identity = 81/153 (52.94%), Postives = 98/153 (64.05%), Query Frame = 0
Query: 7 ELKRLTEIYDFLAGLNSKFNVVCERILGQRPTPSLMEVCSEVQLEENRTSARNILTTPAI 66
+L+ +YDFLAGLN KF+ VC RILGQRP PSLMEVC EV+LEE+RT+A +LTTP I
Sbjct: 313 KLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVRLEEDRTNAMGVLTTPTI 372
Query: 67 DSTAFSARSSTHDSGSTT-KNWSLFMSTVRNCGTPRKYWKLHGHSPRGKKRPLNDKQNSE 126
DS AFSARSS HDS K+ + + T + WKLHG P GKKR N+KQNS
Sbjct: 373 DSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHGRPPGGKKRSSNEKQNSG 432
Query: 127 RAYVSELAGTSQPSGHPGSQNDPSSTTLRAIAQ 159
RAY+SE S + + + TL AIAQ
Sbjct: 433 RAYISETTPASTSQSTDPTVSQTKTPTLGAIAQ 465
BLAST of PI0020890 vs. NCBI nr
Match:
KAA0052172.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 144.1 bits (362), Expect = 1.1e-30
Identity = 87/155 (56.13%), Postives = 103/155 (66.45%), Query Frame = 0
Query: 7 ELKRLTEIYDFLAGLNSKFNVVCERILGQRPTPSLMEVCSEVQLEENRTSARNILTTPAI 66
+L+ +YDFLAGLN KF+ VC RILGQRP PSLMEVC EV+LEE+RT+A +LTTP I
Sbjct: 313 KLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVRLEEDRTNAMGVLTTPTI 372
Query: 67 DSTAFSARSSTHDSGSTT-KNWSLFMSTVRNCGTPRKYWKLHGHSPRGKKRPLNDKQNSE 126
DS AFSARSS HDS K+ S+ + T + WKLHG P GKKR N+KQNS
Sbjct: 373 DSAAFSARSSNHDSDKNNGKSISVCEHCKKQWHTKDQCWKLHGRPPGGKKRSSNEKQNSG 432
Query: 127 RAYVSEL--AGTSQPSGHPGSQNDPSSTTLRAIAQ 159
RAY+SE A TSQ + SQ + TL AIAQ
Sbjct: 433 RAYISETIPASTSQSTDPTVSQT--KTPTLGAIAQ 465
BLAST of PI0020890 vs. NCBI nr
Match:
KAA0025328.1 (cysteine-rich RLK RECEPTOR-like protein kinase [Cucumis melo var. makuwa])
HSP 1 Score: 142.9 bits (359), Expect = 2.4e-30
Identity = 85/155 (54.84%), Postives = 102/155 (65.81%), Query Frame = 0
Query: 7 ELKRLTEIYDFLAGLNSKFNVVCERILGQRPTPSLMEVCSEVQLEENRTSARNILTTPAI 66
+L+ + +YDFLAGLN KF+ VC RILGQRP PSLMEVC EV+LEE+RT+ +LTTP I
Sbjct: 309 KLEEVDRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVRLEEDRTNVMGVLTTPTI 368
Query: 67 DSTAFSARSSTHDSGSTT-KNWSLFMSTVRNCGTPRKYWKLHGHSPRGKKRPLNDKQNSE 126
DS AFSARSS HDS K+ + + T + WKLHG P GKKR N+KQNS
Sbjct: 369 DSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHGRPPGGKKRSSNEKQNSG 428
Query: 127 RAYVSEL--AGTSQPSGHPGSQNDPSSTTLRAIAQ 159
RAY+SE A TSQ + SQ + TL AIAQ
Sbjct: 429 RAYISETTPASTSQSTDPTASQT--KTPTLSAIAQ 461
BLAST of PI0020890 vs. NCBI nr
Match:
KAA0067540.1 (Beta-galactosidase [Cucumis melo var. makuwa])
HSP 1 Score: 142.1 bits (357), Expect = 4.0e-30
Identity = 85/155 (54.84%), Postives = 102/155 (65.81%), Query Frame = 0
Query: 7 ELKRLTEIYDFLAGLNSKFNVVCERILGQRPTPSLMEVCSEVQLEENRTSARNILTTPAI 66
+L+ +YDFLAGLN KF+ VC RILGQRP PSLMEVC EV+LEE+RT+A +LTTP I
Sbjct: 341 KLEEANRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVRLEEDRTNAMGVLTTPTI 400
Query: 67 DSTAFSARSSTHDSGSTT-KNWSLFMSTVRNCGTPRKYWKLHGHSPRGKKRPLNDKQNSE 126
DS AFSA+SS HDS K+ + + T + WKLHG P GKKR N+KQNS
Sbjct: 401 DSAAFSAQSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHGRPPGGKKRSSNEKQNSG 460
Query: 127 RAYVSEL--AGTSQPSGHPGSQNDPSSTTLRAIAQ 159
RAY+SE A TSQ + SQ + TL AIAQ
Sbjct: 461 RAYISETTPASTSQSTDPTASQT--KTPTLGAIAQ 493
BLAST of PI0020890 vs. NCBI nr
Match:
TYJ99952.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cucumis melo var. makuwa])
HSP 1 Score: 141.7 bits (356), Expect = 5.3e-30
Identity = 81/153 (52.94%), Postives = 98/153 (64.05%), Query Frame = 0
Query: 7 ELKRLTEIYDFLAGLNSKFNVVCERILGQRPTPSLMEVCSEVQLEENRTSARNILTTPAI 66
+L+ +YDFLAGLN KF+ VC RILGQRP PSLMEVC EV+LEE+RT+A +LTTP I
Sbjct: 313 KLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVRLEEDRTNAMGVLTTPTI 372
Query: 67 DSTAFSARSSTHDSGSTT-KNWSLFMSTVRNCGTPRKYWKLHGHSPRGKKRPLNDKQNSE 126
DS AFSARSS HDS K+ + + T + WKLHG P GKKR N+KQNS
Sbjct: 373 DSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHGRPPGGKKRSSNEKQNSG 432
Query: 127 RAYVSELAGTSQPSGHPGSQNDPSSTTLRAIAQ 159
RAY+SE S + + + TL AIAQ
Sbjct: 433 RAYISETTPASTSQSTDPTVSQTKTPTLGAIAQ 465
BLAST of PI0020890 vs. NCBI nr
Match:
KAA0031941.1 (Beta-galactosidase [Cucumis melo var. makuwa])
HSP 1 Score: 141.7 bits (356), Expect = 5.3e-30
Identity = 81/153 (52.94%), Postives = 98/153 (64.05%), Query Frame = 0
Query: 7 ELKRLTEIYDFLAGLNSKFNVVCERILGQRPTPSLMEVCSEVQLEENRTSARNILTTPAI 66
+L+ +YDFLAGLN KF+ VC RILGQRP PSLMEVC EV+LEE+RT+A +LTTP I
Sbjct: 313 KLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVRLEEDRTNAMGVLTTPTI 372
Query: 67 DSTAFSARSSTHDSGSTT-KNWSLFMSTVRNCGTPRKYWKLHGHSPRGKKRPLNDKQNSE 126
DS AFSARSS HDS K+ + + T + WKLHG P GKKR N+KQNS
Sbjct: 373 DSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHGRPPGGKKRSSNEKQNSG 432
Query: 127 RAYVSELAGTSQPSGHPGSQNDPSSTTLRAIAQ 159
RAY+SE S + + + TL AIAQ
Sbjct: 433 RAYISETTPASTSQSTDPTVSQTKTPTLGAIAQ 465
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U8U2 | 5.1e-31 | 56.13 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| A0A5A7SGQ5 | 1.1e-30 | 54.84 | Cysteine-rich RLK RECEPTOR-like protein kinase OS=Cucumis melo var. makuwa OX=11... | [more] |
| A0A5A7VK49 | 2.0e-30 | 54.84 | Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00... | [more] |
| A0A5D3BJK7 | 2.6e-30 | 52.94 | Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0... | [more] |
| A0A5D3C4T4 | 2.6e-30 | 52.94 | Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0052172.1 | 1.1e-30 | 56.13 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
| KAA0025328.1 | 2.4e-30 | 54.84 | cysteine-rich RLK RECEPTOR-like protein kinase [Cucumis melo var. makuwa] | [more] |
| KAA0067540.1 | 4.0e-30 | 54.84 | Beta-galactosidase [Cucumis melo var. makuwa] | [more] |
| TYJ99952.1 | 5.3e-30 | 52.94 | Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cu... | [more] |
| KAA0031941.1 | 5.3e-30 | 52.94 | Beta-galactosidase [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
