PI0020823 (gene) Melon (PI 482460) v1

Overview


Name	PI0020823
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr02: 17359511 .. 17359675 (+)
RNA-Seq Expression	PI0020823
Synteny	PI0020823

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAACAATGACATACCAGATGACGTTGATGAAGGTAACTCTACATACGCCACCACTAACGATAAAGATATTCATTACATAGAGACCTCGAACGCATGGAGTCAATGGAGGGACGAGCTTGCCAGAAAAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAA

mRNA sequence

ATGACGAACAATGACATACCAGATGACGTTGATGAAGGTAACTCTACATACGCCACCACTAACGATAAAGATATTCATTACATAGAGACCTCGAACGCATGGAGTCAATGGAGGGACGAGCTTGCCAGAAAAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAA

Coding sequence (CDS)

ATGACGAACAATGACATACCAGATGACGTTGATGAAGGTAACTCTACATACGCCACCACTAACGATAAAGATATTCATTACATAGAGACCTCGAACGCATGGAGTCAATGGAGGGACGAGCTTGCCAGAAAAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAA

Protein sequence

MTNNDIPDDVDEGNSTYATTNDKDIHYIETSNAWSQWRDELARKMFSDWELRNQ

Homology

[Close]

BLAST of PI0020823 vs. ExPASy TrEMBL
Match: A0A5D3BL48 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00970 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGNSTYATTNDKDIHYIETSNAWSQWRDELARKMFSDWELRNQ 55
           MTN DI D++DE +ST+ATT   DIHYIETSN WSQWRD+LA +MFSDWELRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

[Close]

BLAST of PI0020823 vs. ExPASy TrEMBL
Match: A0A5A7VJX3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001490 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGNSTYATTNDKDIHYIETSNAWSQWRDELARKMFSDWELRNQ 55
           MTN DI D++DE +ST+ATT   DIHYIETSN WSQWRD+LA +MFSDWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0020823 vs. ExPASy TrEMBL
Match: A0A5D3DV38 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00230 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.7e-13
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGNSTYATTNDKDIHYIETSNAWSQWRDELARKMFSDWELRNQ 55
           MTN DI D++DE +ST+ATT   DIHYIETSN WSQWRD+LA +MFS+WELRNQ
Sbjct: 209 MTNFDIQDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSEWELRNQ 262

[Close]

BLAST of PI0020823 vs. ExPASy TrEMBL
Match: A0A5A7U2U5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G002280 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.7e-13
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGNSTYATTNDKDIHYIETSNAWSQWRDELARKMFSDWELRNQ 55
           MTN DI D++DE +ST+ATT   DIHYIETSN WSQWRD+LA +MFS+WELRNQ
Sbjct: 231 MTNFDIQDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSEWELRNQ 284

[Close]

BLAST of PI0020823 vs. ExPASy TrEMBL
Match: A0A5D3BCB2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00180 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.8e-13
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MTNNDIPDDVDEGNSTYATTNDKDIHYIETSNAWSQWRDELARKMFSDWELRN 54
          MTN DIPDD+DE  S++ATT   DIHY+ETSN WS+WRDEL  +MFSDWELRN
Sbjct: 1  MTNFDIPDDIDEAYSSHATTVGDDIHYVETSNEWSRWRDELVDEMFSDWELRN 53

[Close]

BLAST of PI0020823 vs. NCBI nr
Match: KAA0067470.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 2.6e-13
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGNSTYATTNDKDIHYIETSNAWSQWRDELARKMFSDWELRNQ 55
           MTN DI D++DE +ST+ATT   DIHYIETSN WSQWRD+LA +MFSDWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0020823 vs. NCBI nr
Match: TYJ99699.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 2.6e-13
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGNSTYATTNDKDIHYIETSNAWSQWRDELARKMFSDWELRNQ 55
           MTN DI D++DE +ST+ATT   DIHYIETSN WSQWRD+LA +MFSDWELRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

[Close]

BLAST of PI0020823 vs. NCBI nr
Match: TYK27175.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 7.6e-13
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGNSTYATTNDKDIHYIETSNAWSQWRDELARKMFSDWELRNQ 55
           MTN DI D++DE +ST+ATT   DIHYIETSN WSQWRD+LA +MFS+WELRNQ
Sbjct: 209 MTNFDIQDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSEWELRNQ 262

[Close]

BLAST of PI0020823 vs. NCBI nr
Match: KAA0048587.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 7.6e-13
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGNSTYATTNDKDIHYIETSNAWSQWRDELARKMFSDWELRNQ 55
           MTN DI D++DE +ST+ATT   DIHYIETSN WSQWRD+LA +MFS+WELRNQ
Sbjct: 231 MTNFDIQDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSEWELRNQ 284

[Close]

BLAST of PI0020823 vs. NCBI nr
Match: KAA0054126.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 9.9e-13
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNNDIPDDVDEGNSTYATTNDKDIHYIETSNAWSQWRDELARKMFSDWELRNQ 55
           MTN DI D++DE +ST+ATT   DIHYIETSN WSQWRD+LA +MF+DWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRNQ 307

The following BLAST results are available for this feature:

BLAST of PI0020823 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020823 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BL48	1.3e-13	74.07	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7VJX3	1.3e-13	74.07	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DV38	3.7e-13	72.22	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U2U5	3.7e-13	72.22	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BCB2	4.8e-13	71.70	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0020823 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067470.1	2.6e-13	74.07	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ99699.1	2.6e-13	74.07	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
TYK27175.1	7.6e-13	72.22	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048587.1	7.6e-13	72.22	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054126.1	9.9e-13	72.22	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]

BLAST of PI0020823 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0020823.1	PI0020823.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding