Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGCATACTCTCTGGGTTTTACTTCTCAAAGGTCGTCTAGTCCATGCATGCCGGATAGGACATATCCCACATCCTATTTCGTGGAAATTCCTAACCCGACCACACAACATACAGTCCATGTGAGTGATCCGATATCTACCCCAATTAAGGAAAGCGGTAAGAAAGTTTTAAAAGATCAGGGTAGTAGAAGAAGACTGGAATTTCTGGAAGAAAGATTGCGTGCGATTGAAGGTGTAGATATGTATGAGGGTATTGATGCAACACAATTATGTTTGATATCAAATGTGGTGATCCCTCCTCAATTCAAGACTCCATATTTTGAGAAATACAATGGAACCGTGTGCTCGAAAAGTCATCTAGTTATGTACTGTTGAAAAATGTCAGCTTTCGCTCATGATGATAAATTGTTGATTCATTGTTTCCAAGATAGCTTAATTGGCCCGACTTCTCGCTGA
mRNA sequence
ATGTTTGCATACTCTCTGGGTTTTACTTCTCAAAGGTCGTCTAGTCCATGCATGCCGGATAGGACATATCCCACATCCTATTTCGTGGAAATTCCTAACCCGACCACACAACATACAGTCCATGTGAGTGATCCGATATCTACCCCAATTAAGGAAAGCGGTAAGAAAGTTTTAAAAGATCAGGGTAGTAGAAGAAGACTGGAATTTCTGGAAGAAAGATTGCGTGCGATTGAAGGTGTAGATATGTATGAGGGTATTGATGCAACACAATTATGTTTGATATCAAATGTGGTGATCCCTCCTCAATTCAAGACTCCATATTTTGAGAAATACAATGGAACCGTGTGCTCGAAAACTTTCGCTCATGATGATAAATTGTTGATTCATTGTTTCCAAGATAGCTTAATTGGCCCGACTTCTCGCTGA
Coding sequence (CDS)
ATGTTTGCATACTCTCTGGGTTTTACTTCTCAAAGGTCGTCTAGTCCATGCATGCCGGATAGGACATATCCCACATCCTATTTCGTGGAAATTCCTAACCCGACCACACAACATACAGTCCATGTGAGTGATCCGATATCTACCCCAATTAAGGAAAGCGGTAAGAAAGTTTTAAAAGATCAGGGTAGTAGAAGAAGACTGGAATTTCTGGAAGAAAGATTGCGTGCGATTGAAGGTGTAGATATGTATGAGGGTATTGATGCAACACAATTATGTTTGATATCAAATGTGGTGATCCCTCCTCAATTCAAGACTCCATATTTTGAGAAATACAATGGAACCGTGTGCTCGAAAACTTTCGCTCATGATGATAAATTGTTGATTCATTGTTTCCAAGATAGCTTAATTGGCCCGACTTCTCGCTGA
Protein sequence
MFAYSLGFTSQRSSSPCMPDRTYPTSYFVEIPNPTTQHTVHVSDPISTPIKESGKKVLKDQGSRRRLEFLEERLRAIEGVDMYEGIDATQLCLISNVVIPPQFKTPYFEKYNGTVCSKTFAHDDKLLIHCFQDSLIGPTSR
Homology
BLAST of PI0020779 vs. ExPASy TrEMBL
Match:
A0A5A7V681 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00760 PE=4 SV=1)
HSP 1 Score: 201.1 bits (510), Expect = 3.2e-48
Identity = 102/152 (67.11%), Postives = 114/152 (75.00%), Query Frame = 0
Query: 1 MFAYSLGFTSQRSSSPCMPDRTYPTSYFVEIPNPTTQHTVHVSDPISTPIKESGKKVLKD 60
M AY GFT QRSSSP M DRTYPTS+ PN TTQ H ++PIST I E GKK+ ++
Sbjct: 56 MPAYPPGFTPQRSSSPRMGDRTYPTSFPTPNPNTTTQQVAHANNPISTLIMEGGKKISEE 115
Query: 61 QGSRRRLEFLEERLRAIEGVDMYEGIDATQLCLISNVVIPPQFKTPYFEKYNGTVCSKT- 120
QGSRRRLEFLEERLR IEG DMY IDATQLCLIS+VVIPP+FKTP FEKYNGT C K+
Sbjct: 116 QGSRRRLEFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTSCPKSH 175
Query: 121 ----------FAHDDKLLIHCFQDSLIGPTSR 142
+AHDDKLLIHCFQD+L+GP SR
Sbjct: 176 LVMYCRKMSAYAHDDKLLIHCFQDNLVGPASR 207
BLAST of PI0020779 vs. ExPASy TrEMBL
Match:
A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)
HSP 1 Score: 200.7 bits (509), Expect = 4.1e-48
Identity = 102/152 (67.11%), Postives = 113/152 (74.34%), Query Frame = 0
Query: 1 MFAYSLGFTSQRSSSPCMPDRTYPTSYFVEIPNPTTQHTVHVSDPISTPIKESGKKVLKD 60
M Y GFT QRSSSP M DRTYPTS+ PN TTQ H ++PIST I E GKK+ ++
Sbjct: 56 MPTYPPGFTPQRSSSPRMGDRTYPTSFPAPNPNTTTQQAAHANNPISTLIMEGGKKISEE 115
Query: 61 QGSRRRLEFLEERLRAIEGVDMYEGIDATQLCLISNVVIPPQFKTPYFEKYNGTVCSKT- 120
QGSRRRLEFLEERLR IEG DMY IDATQLCLIS+VVIPP+FKTP FEKYNGT C K+
Sbjct: 116 QGSRRRLEFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTSCPKSH 175
Query: 121 ----------FAHDDKLLIHCFQDSLIGPTSR 142
+AHDDKLLIHCFQDSL+GP SR
Sbjct: 176 LVMYCRKMSAYAHDDKLLIHCFQDSLVGPASR 207
BLAST of PI0020779 vs. ExPASy TrEMBL
Match:
A0A5A7TXF2 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001530 PE=4 SV=1)
HSP 1 Score: 200.7 bits (509), Expect = 4.1e-48
Identity = 102/152 (67.11%), Postives = 113/152 (74.34%), Query Frame = 0
Query: 1 MFAYSLGFTSQRSSSPCMPDRTYPTSYFVEIPNPTTQHTVHVSDPISTPIKESGKKVLKD 60
M AY GFT QRSSSP M D TYPTS+ PN TTQ H ++PISTPI E KK+ ++
Sbjct: 56 MPAYPPGFTPQRSSSPRMGDITYPTSFPAPNPNTTTQQAAHANNPISTPIMEGSKKISEE 115
Query: 61 QGSRRRLEFLEERLRAIEGVDMYEGIDATQLCLISNVVIPPQFKTPYFEKYNGTVCSKT- 120
QGSRRRLEFLEERLR IEG DMY IDATQLCLIS+VVIPP+FKTP FEKYNGT C K+
Sbjct: 116 QGSRRRLEFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTSCPKSH 175
Query: 121 ----------FAHDDKLLIHCFQDSLIGPTSR 142
+AHDDKLLIHCFQDSL+GP SR
Sbjct: 176 LVMYCRKMSAYAHDDKLLIHCFQDSLVGPASR 207
BLAST of PI0020779 vs. ExPASy TrEMBL
Match:
A0A5A7ULI2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00770 PE=4 SV=1)
HSP 1 Score: 198.0 bits (502), Expect = 2.7e-47
Identity = 103/152 (67.76%), Postives = 116/152 (76.32%), Query Frame = 0
Query: 1 MFAYSLGFTSQRSSSPCMPDRTYPTSYFVEIPNPTTQHTVHVSDPISTPIKESGKKVLKD 60
M AY GFT QRSSSPCM TYPT + PNP TQ HVSDP+STPI ESGKK+ ++
Sbjct: 70 MPAYPQGFTPQRSSSPCM---TYPT----QNPNPITQQENHVSDPMSTPITESGKKISEE 129
Query: 61 QGSRRRLEFLEERLRAIEGVDMYEGIDATQLCLISNVVIPPQFKTPYFEKYNGTVCSKT- 120
QGSR+RLEFLEERLRAI+G DMY IDATQLCLIS+VVIPP+FKTP FEKYNGT C K+
Sbjct: 130 QGSRKRLEFLEERLRAIKGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTTCPKSH 189
Query: 121 ----------FAHDDKLLIHCFQDSLIGPTSR 142
+AHD+KLLIHCFQDSL+GP SR
Sbjct: 190 LVMYCRKMSAYAHDNKLLIHCFQDSLVGPASR 214
BLAST of PI0020779 vs. ExPASy TrEMBL
Match:
A0A5A7T401 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1593G00270 PE=4 SV=1)
HSP 1 Score: 197.2 bits (500), Expect = 4.6e-47
Identity = 103/152 (67.76%), Postives = 116/152 (76.32%), Query Frame = 0
Query: 1 MFAYSLGFTSQRSSSPCMPDRTYPTSYFVEIPNPTTQHTVHVSDPISTPIKESGKKVLKD 60
M AY +GFT QRSSSP M TYPT + PNP TQ T HVSDP+STPI +SGKK+ ++
Sbjct: 56 MPAYPIGFTPQRSSSPRM---TYPT----QNPNPITQQTDHVSDPMSTPITKSGKKISEE 115
Query: 61 QGSRRRLEFLEERLRAIEGVDMYEGIDATQLCLISNVVIPPQFKTPYFEKYNGTVCSKT- 120
Q SR+RLEFLEERLR IEG DMY IDATQLCLIS+VVIPP+FKTP FEKYNGT C K+
Sbjct: 116 QSSRKRLEFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTTCPKSH 175
Query: 121 ----------FAHDDKLLIHCFQDSLIGPTSR 142
+AHDDKLLIHCFQDSL+GPTSR
Sbjct: 176 LVMYCQKMSAYAHDDKLLIHCFQDSLVGPTSR 200
BLAST of PI0020779 vs. NCBI nr
Match:
KAA0061241.1 (uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa])
HSP 1 Score: 201.1 bits (510), Expect = 6.5e-48
Identity = 102/152 (67.11%), Postives = 114/152 (75.00%), Query Frame = 0
Query: 1 MFAYSLGFTSQRSSSPCMPDRTYPTSYFVEIPNPTTQHTVHVSDPISTPIKESGKKVLKD 60
M AY GFT QRSSSP M DRTYPTS+ PN TTQ H ++PIST I E GKK+ ++
Sbjct: 56 MPAYPPGFTPQRSSSPRMGDRTYPTSFPTPNPNTTTQQVAHANNPISTLIMEGGKKISEE 115
Query: 61 QGSRRRLEFLEERLRAIEGVDMYEGIDATQLCLISNVVIPPQFKTPYFEKYNGTVCSKT- 120
QGSRRRLEFLEERLR IEG DMY IDATQLCLIS+VVIPP+FKTP FEKYNGT C K+
Sbjct: 116 QGSRRRLEFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTSCPKSH 175
Query: 121 ----------FAHDDKLLIHCFQDSLIGPTSR 142
+AHDDKLLIHCFQD+L+GP SR
Sbjct: 176 LVMYCRKMSAYAHDDKLLIHCFQDNLVGPASR 207
BLAST of PI0020779 vs. NCBI nr
Match:
KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])
HSP 1 Score: 200.7 bits (509), Expect = 8.5e-48
Identity = 102/152 (67.11%), Postives = 113/152 (74.34%), Query Frame = 0
Query: 1 MFAYSLGFTSQRSSSPCMPDRTYPTSYFVEIPNPTTQHTVHVSDPISTPIKESGKKVLKD 60
M Y GFT QRSSSP M DRTYPTS+ PN TTQ H ++PIST I E GKK+ ++
Sbjct: 56 MPTYPPGFTPQRSSSPRMGDRTYPTSFPAPNPNTTTQQAAHANNPISTLIMEGGKKISEE 115
Query: 61 QGSRRRLEFLEERLRAIEGVDMYEGIDATQLCLISNVVIPPQFKTPYFEKYNGTVCSKT- 120
QGSRRRLEFLEERLR IEG DMY IDATQLCLIS+VVIPP+FKTP FEKYNGT C K+
Sbjct: 116 QGSRRRLEFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTSCPKSH 175
Query: 121 ----------FAHDDKLLIHCFQDSLIGPTSR 142
+AHDDKLLIHCFQDSL+GP SR
Sbjct: 176 LVMYCRKMSAYAHDDKLLIHCFQDSLVGPASR 207
BLAST of PI0020779 vs. NCBI nr
Match:
KAA0046607.1 (Gag-pro-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 200.7 bits (509), Expect = 8.5e-48
Identity = 102/152 (67.11%), Postives = 113/152 (74.34%), Query Frame = 0
Query: 1 MFAYSLGFTSQRSSSPCMPDRTYPTSYFVEIPNPTTQHTVHVSDPISTPIKESGKKVLKD 60
M AY GFT QRSSSP M D TYPTS+ PN TTQ H ++PISTPI E KK+ ++
Sbjct: 56 MPAYPPGFTPQRSSSPRMGDITYPTSFPAPNPNTTTQQAAHANNPISTPIMEGSKKISEE 115
Query: 61 QGSRRRLEFLEERLRAIEGVDMYEGIDATQLCLISNVVIPPQFKTPYFEKYNGTVCSKT- 120
QGSRRRLEFLEERLR IEG DMY IDATQLCLIS+VVIPP+FKTP FEKYNGT C K+
Sbjct: 116 QGSRRRLEFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTSCPKSH 175
Query: 121 ----------FAHDDKLLIHCFQDSLIGPTSR 142
+AHDDKLLIHCFQDSL+GP SR
Sbjct: 176 LVMYCRKMSAYAHDDKLLIHCFQDSLVGPASR 207
BLAST of PI0020779 vs. NCBI nr
Match:
KAA0055146.1 (uncharacterized protein E6C27_scaffold231G00770 [Cucumis melo var. makuwa])
HSP 1 Score: 198.0 bits (502), Expect = 5.5e-47
Identity = 103/152 (67.76%), Postives = 116/152 (76.32%), Query Frame = 0
Query: 1 MFAYSLGFTSQRSSSPCMPDRTYPTSYFVEIPNPTTQHTVHVSDPISTPIKESGKKVLKD 60
M AY GFT QRSSSPCM TYPT + PNP TQ HVSDP+STPI ESGKK+ ++
Sbjct: 70 MPAYPQGFTPQRSSSPCM---TYPT----QNPNPITQQENHVSDPMSTPITESGKKISEE 129
Query: 61 QGSRRRLEFLEERLRAIEGVDMYEGIDATQLCLISNVVIPPQFKTPYFEKYNGTVCSKT- 120
QGSR+RLEFLEERLRAI+G DMY IDATQLCLIS+VVIPP+FKTP FEKYNGT C K+
Sbjct: 130 QGSRKRLEFLEERLRAIKGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTTCPKSH 189
Query: 121 ----------FAHDDKLLIHCFQDSLIGPTSR 142
+AHD+KLLIHCFQDSL+GP SR
Sbjct: 190 LVMYCRKMSAYAHDNKLLIHCFQDSLVGPASR 214
BLAST of PI0020779 vs. NCBI nr
Match:
XP_016903339.1 (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])
HSP 1 Score: 197.2 bits (500), Expect = 9.4e-47
Identity = 103/152 (67.76%), Postives = 116/152 (76.32%), Query Frame = 0
Query: 1 MFAYSLGFTSQRSSSPCMPDRTYPTSYFVEIPNPTTQHTVHVSDPISTPIKESGKKVLKD 60
M AY +GFT QRSSSP M TYPT + PNP TQ T HVSDP+STPI +SGKK+ ++
Sbjct: 56 MPAYPIGFTPQRSSSPRM---TYPT----QNPNPITQQTDHVSDPMSTPITKSGKKISEE 115
Query: 61 QGSRRRLEFLEERLRAIEGVDMYEGIDATQLCLISNVVIPPQFKTPYFEKYNGTVCSKT- 120
Q SR+RLEFLEERLR IEG DMY IDATQLCLIS+VVIPP+FKTP FEKYNGT C K+
Sbjct: 116 QSSRKRLEFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTTCPKSH 175
Query: 121 ----------FAHDDKLLIHCFQDSLIGPTSR 142
+AHDDKLLIHCFQDSL+GPTSR
Sbjct: 176 LVMYCQKMSAYAHDDKLLIHCFQDSLVGPTSR 200
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V681 | 3.2e-48 | 67.11 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7VAU5 | 4.1e-48 | 67.11 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7TXF2 | 4.1e-48 | 67.11 | Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114... | [more] |
A0A5A7ULI2 | 2.7e-47 | 67.76 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7T401 | 4.6e-47 | 67.76 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
Match Name | E-value | Identity | Description | |
KAA0061241.1 | 6.5e-48 | 67.11 | uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa] | [more] |
KAA0065293.1 | 8.5e-48 | 67.11 | uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa] | [more] |
KAA0046607.1 | 8.5e-48 | 67.11 | Gag-pro-like protein [Cucumis melo var. makuwa] | [more] |
KAA0055146.1 | 5.5e-47 | 67.76 | uncharacterized protein E6C27_scaffold231G00770 [Cucumis melo var. makuwa] | [more] |
XP_016903339.1 | 9.4e-47 | 67.76 | PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |